Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35309 * 126.12478 * 2 1 4 4 C 1.50704 * 126.04366 * 0.02562 * 3 2 1 5 5 C 1.52999 * 110.06238 * 298.79575 * 4 3 2 6 6 N 1.47907 * 109.91673 * 177.59139 * 4 3 2 7 7 C 1.48535 * 105.81737 * 215.31714 * 6 4 3 8 8 C 1.54933 * 103.22694 * 39.20852 * 7 6 4 9 9 C 1.53986 * 109.91487 * 60.00232 * 4 3 2 10 10 H 1.09007 * 110.31150 * 1.56229 * 9 4 3 11 11 C 1.50706 * 110.30965 * 239.49421 * 9 4 3 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 9 4 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 9 4 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.39876 * 107.91997 * 180.28702 * 3 2 1 20 20 N 1.30845 * 108.19770 * 359.55239 * 19 3 2 21 21 N 1.34948 * 126.12614 * 180.02562 * 2 1 3 22 22 C 1.46505 * 126.03818 * 359.95428 * 21 2 1 23 23 H 1.08993 * 109.47027 * 89.99926 * 1 2 3 24 24 H 1.09007 * 109.46844 * 210.00301 * 1 2 3 25 25 H 1.08998 * 109.47092 * 329.99662 * 1 2 3 26 26 H 1.09007 * 109.46849 * 181.20032 * 5 4 3 27 27 H 1.08993 * 109.47508 * 301.20362 * 5 4 3 28 28 H 1.09005 * 109.47071 * 61.20695 * 5 4 3 29 29 H 1.00902 * 110.99824 * 335.83014 * 6 4 3 30 30 H 1.08995 * 110.66456 * 157.64691 * 7 6 4 31 31 H 1.08997 * 110.66455 * 280.60550 * 7 6 4 32 32 H 1.09003 * 110.72493 * 204.23302 * 8 7 6 33 33 H 1.08996 * 110.72786 * 80.94107 * 8 7 6 34 34 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 35 35 H 1.07992 * 125.90140 * 179.73749 * 19 3 2 36 36 H 1.08998 * 109.46655 * 89.99688 * 22 21 2 37 37 H 1.08992 * 109.47130 * 209.99901 * 22 21 2 38 38 H 1.09000 * 109.46884 * 330.00205 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 0.0005 5 6 1.0231 2.8156 -1.2585 6 7 3.0116 3.4327 0.0588 7 6 2.5852 4.5917 0.8840 8 6 1.7352 3.9373 2.0020 9 6 0.9941 2.8049 1.2548 10 1 0.9370 1.9124 1.8781 11 6 -0.3889 3.2560 0.8608 12 1 -0.6522 3.3412 -0.1832 13 6 -1.3180 3.5598 1.8331 14 7 -0.9972 3.4566 3.1044 15 14 -3.0319 4.1196 1.3448 16 1 -3.0514 5.5988 1.2149 17 1 -3.4023 3.5036 0.0453 18 1 -4.0047 3.7013 2.3860 19 6 3.6335 0.6560 -0.0067 20 7 3.6334 -0.6525 -0.0008 21 7 2.3027 -1.0900 -0.0005 22 6 1.8539 -2.4846 -0.0002 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 0.7125 3.8604 -1.2587 27 1 1.6307 2.6170 -2.1413 28 1 0.1416 2.1745 -1.2724 29 1 3.8079 2.9692 0.4703 30 1 3.4505 5.1018 1.3072 31 1 1.9832 5.2830 0.2943 32 1 1.0264 4.6539 2.4171 33 1 2.3752 3.5289 2.7840 34 1 -0.1071 3.1663 3.3579 35 1 4.5083 1.2891 -0.0123 36 1 1.7420 -2.8304 -1.0278 37 1 2.5901 -3.1031 0.5132 38 1 0.8958 -2.5579 0.5143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = 80.961010 kcal Electronic energy + Delta-G solvation = -19464.158166 eV Core-core repulsion = 16729.251641 eV Total energy + Delta-G solvation = -2734.906525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04528 -38.18966 -33.36692 -32.70894 -32.30796 -29.56580 -28.59483 -26.62992 -26.30001 -24.86929 -23.73092 -21.09907 -19.94963 -19.46259 -18.39164 -16.54292 -16.31064 -15.29352 -14.92778 -14.29899 -14.00924 -13.64901 -13.24756 -13.02117 -12.84051 -12.55056 -12.36971 -12.01642 -11.97579 -11.75521 -11.61308 -11.15845 -10.82320 -10.53229 -10.38918 -10.24437 -10.14591 -10.11571 -9.90766 -9.48421 -8.83412 -8.34549 -8.25613 -7.93076 -7.56500 -6.29665 -4.03508 2.28582 2.87026 3.28228 3.42983 3.43884 3.59559 4.52214 4.77077 5.00549 5.22968 5.24103 5.37534 5.40010 5.43780 5.65062 5.82744 5.88189 6.03829 6.08886 6.20404 6.28059 6.43755 6.47741 6.59229 6.65210 6.80079 6.83425 6.92689 7.07440 7.16310 7.22500 7.35275 7.46831 7.54647 7.70403 8.08212 8.18567 8.30670 8.47898 8.90923 9.67976 11.05486 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.009051 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.530241 B = 3092.826787 C = 3783.846905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.098 3.902 3 C -0.217 4.217 4 C 0.183 3.817 5 C -0.101 4.101 6 N -0.671 5.671 7 C 0.050 3.950 8 C -0.153 4.153 9 C 0.026 3.974 10 H 0.020 0.980 11 C -0.591 4.591 12 H 0.068 0.932 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 1.062 2.938 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.049 3.951 20 N -0.313 5.313 21 N -0.383 5.383 22 C 0.105 3.895 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.127 0.873 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.322 0.678 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.272 0.728 35 H 0.177 0.823 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -6.350 -5.562 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.028 4.028 3 C -0.229 4.229 4 C 0.091 3.909 5 C -0.159 4.159 6 N -0.298 5.298 7 C -0.079 4.079 8 C -0.193 4.193 9 C 0.007 3.993 10 H 0.038 0.962 11 C -0.629 4.629 12 H 0.086 0.914 13 C -0.186 4.186 14 N -0.550 5.550 15 Si 0.891 3.109 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.137 4.137 20 N -0.134 5.134 21 N -0.167 5.167 22 C -0.037 4.037 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.145 0.855 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.918 -6.776 -5.627 9.278 hybrid contribution 1.097 -0.214 0.454 1.206 sum 4.015 -6.989 -5.173 9.577 Atomic orbital electron populations 1.20865 0.86999 1.05785 1.03048 1.20834 0.94729 0.86412 1.00847 1.20114 0.91835 0.95975 1.14945 1.19932 0.89429 0.84225 0.97287 1.21657 0.97928 1.01822 0.94468 1.62956 1.06383 1.08842 1.51658 1.22948 0.97384 0.93864 0.93707 1.23257 0.98402 1.00794 0.96851 1.20019 0.94726 0.93481 0.91124 0.96162 1.22307 0.96088 1.48983 0.95535 0.91367 1.25709 1.04047 0.95067 0.93765 1.70738 1.23588 1.43735 1.16920 0.83631 0.75591 0.76561 0.75083 1.21634 1.21404 1.21322 1.23578 0.97827 0.91850 1.00413 1.77209 0.96882 1.12919 1.26397 1.48311 1.03985 1.05655 1.58755 1.21704 1.00783 0.78461 1.02708 0.91000 0.92531 0.85466 0.92206 0.95530 0.92174 0.86257 0.92956 0.90651 0.90601 0.95166 0.91664 0.80585 0.91337 0.89869 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 8.47 36.01 0.30 -1.56 16 2 C 0.10 1.81 6.57 -82.26 -0.54 1.27 16 3 C -0.22 -4.23 4.61 -105.05 -0.48 -4.72 16 4 C 0.18 3.73 0.88 -131.68 -0.12 3.61 16 5 C -0.10 -2.04 7.17 37.16 0.27 -1.77 16 6 N -0.67 -12.71 6.93 -97.63 -0.68 -13.39 16 7 C 0.05 0.98 7.54 -1.90 -0.01 0.97 16 8 C -0.15 -3.45 5.46 -24.87 -0.14 -3.59 16 9 C 0.03 0.61 1.22 -90.41 -0.11 0.50 16 10 H 0.02 0.53 6.84 -51.92 -0.36 0.17 16 11 C -0.59 -14.71 6.00 -34.44 -0.21 -14.91 16 12 H 0.07 1.67 4.70 -52.48 -0.25 1.43 16 13 C 0.02 0.49 5.09 -17.82 -0.09 0.40 16 14 N -0.91 -25.97 13.04 55.43 0.72 -25.25 16 15 Si 1.06 23.81 29.90 -169.99 -5.08 18.73 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 C 0.05 0.88 10.99 -17.36 -0.19 0.69 16 20 N -0.31 -5.73 12.58 30.63 0.39 -5.35 16 21 N -0.38 -6.49 4.01 -63.88 -0.26 -6.75 16 22 C 0.11 1.24 11.27 59.85 0.67 1.92 16 23 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 24 H 0.06 0.82 7.08 -51.92 -0.37 0.46 16 25 H 0.13 2.62 4.51 -51.93 -0.23 2.38 16 26 H 0.06 1.26 7.16 -51.93 -0.37 0.89 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.20 5.22 -51.93 -0.27 0.93 16 29 H 0.32 5.62 6.54 -39.29 -0.26 5.36 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.90 6.67 -51.93 -0.35 1.55 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.27 7.78 6.13 -40.82 -0.25 7.53 16 35 H 0.18 2.73 6.90 -52.49 -0.36 2.37 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.85 7.05 -51.93 -0.37 0.48 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -29.45 288.61 -6.37 -35.83 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.17 Total: 9.01 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -0.64 Total: -17.18 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.17 Total: -50.74 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.08 Total: 18.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.45 -6.37 -35.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.787 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds