Wall clock time and date at job start Mon Mar 30 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39864 * 125.89750 * 2 1 4 4 C 1.35318 * 107.91520 * 179.72069 * 3 2 1 5 5 C 1.50707 * 126.12525 * 180.27143 * 4 3 2 6 6 H 1.09008 * 109.46592 * 245.18423 * 5 4 3 7 7 C 1.50697 * 109.47469 * 125.18784 * 5 4 3 8 8 H 1.08008 * 119.99269 * 305.34241 * 7 5 4 9 9 C 1.37868 * 120.00494 * 125.34279 * 7 5 4 10 10 N 1.31518 * 119.99950 * 5.64240 * 9 7 5 11 11 Si 1.86798 * 120.00254 * 185.64936 * 9 7 5 12 12 H 1.48495 * 109.47518 * 59.99290 * 11 9 7 13 13 H 1.48497 * 109.47183 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46862 * 299.99577 * 11 9 7 15 15 N 1.46900 * 109.47033 * 5.18219 * 5 4 3 16 16 C 1.48527 * 110.99961 * 71.81107 * 15 5 4 17 17 C 1.54937 * 103.22591 * 159.71672 * 16 15 5 18 18 C 1.54598 * 102.92413 * 322.58892 * 17 16 15 19 19 C 1.47898 * 110.99672 * 189.20813 * 15 5 4 20 20 N 1.34942 * 107.74950 * 0.42298 * 4 3 2 21 21 C 1.46500 * 126.03943 * 179.83787 * 20 4 3 22 22 N 1.30833 * 125.89535 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47080 * 269.99414 * 1 2 3 24 24 H 1.09003 * 109.47368 * 29.99419 * 1 2 3 25 25 H 1.09002 * 109.47712 * 149.99383 * 1 2 3 26 26 H 1.07996 * 126.04167 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00272 * 174.99888 * 10 9 7 28 28 H 1.08991 * 110.66855 * 278.15603 * 16 15 5 29 29 H 1.09009 * 110.66686 * 41.28580 * 16 15 5 30 30 H 1.09007 * 110.72534 * 204.22919 * 17 16 15 31 31 H 1.09000 * 110.87306 * 81.02029 * 17 16 15 32 32 H 1.09000 * 110.30743 * 263.03946 * 18 17 16 33 33 H 1.08993 * 110.30686 * 140.87228 * 18 17 16 34 34 H 1.09001 * 109.92433 * 333.51114 * 19 15 5 35 35 H 1.09006 * 109.91622 * 94.80569 * 19 15 5 36 36 H 1.08999 * 109.47312 * 269.71784 * 21 20 4 37 37 H 1.09001 * 109.47114 * 29.72049 * 21 20 4 38 38 H 1.08999 * 109.47103 * 149.72152 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 0.0063 5 6 4.8350 1.5988 0.0143 6 1 5.3873 1.4639 -0.9158 7 6 5.7158 1.2282 1.1797 8 1 5.3102 1.2163 2.1806 9 6 7.0391 0.9043 0.9681 10 7 7.5619 1.0255 -0.2326 11 14 8.0894 0.2931 2.3868 12 1 7.4990 -0.9525 2.9391 13 1 9.4647 0.0152 1.9006 14 1 8.1393 1.3303 3.4485 15 7 4.4224 3.0031 0.1395 16 6 3.9206 3.2905 1.5076 17 6 4.0425 4.8314 1.6135 18 6 5.3562 5.1273 0.8541 19 6 5.5695 3.9131 -0.0687 20 7 3.6087 -0.6341 0.0006 21 6 4.7899 -1.5008 0.0010 22 7 2.2741 -1.0599 0.0005 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9923 2.1597 -0.0004 27 1 8.5095 0.8676 -0.3672 28 1 2.8812 2.9788 1.6095 29 1 4.5447 2.8028 2.2566 30 1 4.1211 5.1415 2.6556 31 1 3.1982 5.3220 1.1292 32 1 6.1857 5.2200 1.5551 33 1 5.2551 6.0380 0.2639 34 1 6.4982 3.4061 0.1933 35 1 5.6015 4.2382 -1.1087 36 1 5.0833 -1.7156 -1.0265 37 1 5.6091 -0.9984 0.5154 38 1 4.5560 -2.4335 0.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260534999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:10 Heat of formation + Delta-G solvation = 78.105871 kcal Electronic energy + Delta-G solvation = -19230.733621 eV Core-core repulsion = 16495.703288 eV Total energy + Delta-G solvation = -2735.030333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31075 -37.84106 -33.90236 -32.63696 -31.45910 -29.02557 -28.48043 -27.74104 -26.22650 -24.51853 -23.14894 -20.30771 -19.95606 -19.02744 -18.40213 -16.62817 -15.62112 -15.15334 -14.65128 -14.55174 -14.30844 -13.24330 -13.00719 -12.91736 -12.84104 -12.52301 -12.35095 -11.94306 -11.77809 -11.48061 -11.36431 -11.12330 -10.90725 -10.78697 -10.72664 -10.50047 -10.22207 -10.07571 -9.72095 -9.61512 -9.42729 -8.82695 -8.06637 -7.41305 -7.18619 -6.30608 -4.45671 2.92548 3.09712 3.17110 3.20502 3.52063 3.76117 4.15750 4.85469 5.24496 5.43293 5.51563 5.57179 5.68284 5.74960 5.90116 6.01942 6.09939 6.17972 6.24007 6.29450 6.34718 6.49630 6.51166 6.52963 6.67459 6.78326 6.85461 6.99047 6.99618 7.05490 7.19336 7.35445 7.56480 7.67621 7.85886 8.04107 8.16286 8.33025 8.65723 8.82802 9.20357 10.67043 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.011066 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.747278 B = 2529.763629 C = 3755.656180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.052 3.948 3 C -0.293 4.293 4 C 0.147 3.853 5 C 0.235 3.765 6 H 0.094 0.906 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.078 3.922 10 N -0.879 5.879 11 Si 0.885 3.115 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.274 1.274 15 N -0.511 5.511 16 C 0.034 3.966 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.047 3.953 20 N -0.360 5.360 21 C 0.099 3.901 22 N -0.333 5.333 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.140 0.860 27 H 0.270 0.730 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 2.592 1.280 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.322 4.322 4 C 0.017 3.983 5 C 0.126 3.874 6 H 0.112 0.888 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.127 4.127 10 N -0.515 5.515 11 Si 0.712 3.288 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.199 1.199 15 N -0.235 5.235 16 C -0.094 4.094 17 C -0.161 4.161 18 C -0.165 4.165 19 C -0.081 4.081 20 N -0.141 5.141 21 C -0.042 4.042 22 N -0.157 5.157 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.898 1.196 0.726 5.094 hybrid contribution 1.405 0.309 1.374 1.989 sum -3.493 1.506 2.100 4.345 Atomic orbital electron populations 1.20012 0.88088 1.02137 1.01835 1.22129 0.96065 0.91806 1.01285 1.20994 0.91220 0.98743 1.21237 1.21736 0.97708 0.84189 0.94624 1.18264 0.86147 0.83261 0.99695 0.88807 1.21357 0.94938 1.47867 0.93864 0.92065 1.25003 0.97935 0.94189 0.95614 1.69849 1.13356 1.47589 1.20737 0.86749 0.79519 0.79906 0.82659 1.19799 1.20863 1.19900 1.64927 1.28933 1.05207 1.24415 1.23179 0.99997 0.93320 0.92871 1.22447 0.97393 0.97484 0.98791 1.22348 0.97365 0.98331 0.98425 1.22560 0.95813 0.92118 0.97623 1.48066 1.04359 1.04753 1.56937 1.21994 0.85810 0.94042 1.02392 1.77065 0.87114 1.23070 1.28437 0.91575 0.91178 0.91975 0.84216 0.91990 0.91586 0.92094 0.92660 0.92106 0.92554 0.92691 0.90827 0.92740 0.92357 0.86500 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.45 36.01 0.38 -0.54 16 2 C 0.05 1.05 7.22 -82.41 -0.59 0.46 16 3 C -0.29 -6.27 8.95 -40.01 -0.36 -6.62 16 4 C 0.15 3.39 5.98 -82.26 -0.49 2.90 16 5 C 0.23 5.50 2.27 -70.01 -0.16 5.34 16 6 H 0.09 2.48 6.91 -51.92 -0.36 2.12 16 7 C -0.54 -13.04 4.56 -34.44 -0.16 -13.20 16 8 H 0.06 1.55 6.47 -52.48 -0.34 1.21 16 9 C 0.08 1.87 3.74 -17.82 -0.07 1.81 16 10 N -0.88 -21.89 12.31 55.43 0.68 -21.21 16 11 Si 0.88 19.18 29.54 -169.99 -5.02 14.16 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 N -0.51 -10.91 4.68 -225.28 -1.05 -11.96 16 16 C 0.03 0.68 5.57 -1.90 -0.01 0.67 16 17 C -0.12 -2.04 7.06 -24.87 -0.18 -2.21 16 18 C -0.13 -2.16 6.93 -25.37 -0.18 -2.34 16 19 C 0.05 0.97 6.46 -2.76 -0.02 0.95 16 20 N -0.36 -8.21 4.01 -63.88 -0.26 -8.47 16 21 C 0.10 2.04 11.22 59.85 0.67 2.71 16 22 N -0.33 -7.41 12.58 33.67 0.42 -6.98 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.14 2.84 6.81 -52.49 -0.36 2.49 16 27 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 28 H 0.07 1.28 6.34 -51.93 -0.33 0.95 16 29 H 0.06 1.33 5.54 -51.92 -0.29 1.04 16 30 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.71 6.25 -51.93 -0.32 1.39 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.12 2.59 4.87 -51.93 -0.25 2.34 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 297.79 15.07 4.49 4.49 Total: -1.00 -26.34 297.79 -7.51 -33.85 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.61 Total: 6.22 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.20 Total: -48.62 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.34 -7.51 -33.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.954 kcal (2) G-P(sol) polarization free energy of solvation -26.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds