Wall clock time and date at job start Mon Mar 30 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39864 * 125.89750 * 2 1 4 4 C 1.35318 * 107.91520 * 179.72069 * 3 2 1 5 5 C 1.50707 * 126.12525 * 180.27143 * 4 3 2 6 6 H 1.09008 * 109.46592 * 245.18423 * 5 4 3 7 7 C 1.50697 * 109.47469 * 125.18784 * 5 4 3 8 8 H 1.08008 * 119.99269 * 305.34241 * 7 5 4 9 9 C 1.37868 * 120.00494 * 125.34279 * 7 5 4 10 10 N 1.31518 * 119.99950 * 5.64240 * 9 7 5 11 11 Si 1.86798 * 120.00254 * 185.64936 * 9 7 5 12 12 H 1.48495 * 109.47518 * 59.99290 * 11 9 7 13 13 H 1.48497 * 109.47183 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46862 * 299.99577 * 11 9 7 15 15 N 1.46900 * 109.47033 * 5.18219 * 5 4 3 16 16 C 1.48527 * 110.99961 * 71.81107 * 15 5 4 17 17 C 1.54937 * 103.22591 * 159.71672 * 16 15 5 18 18 C 1.54598 * 102.92413 * 322.58892 * 17 16 15 19 19 C 1.47898 * 110.99672 * 189.20813 * 15 5 4 20 20 N 1.34942 * 107.74950 * 0.42298 * 4 3 2 21 21 C 1.46500 * 126.03943 * 179.83787 * 20 4 3 22 22 N 1.30833 * 125.89535 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47080 * 269.99414 * 1 2 3 24 24 H 1.09003 * 109.47368 * 29.99419 * 1 2 3 25 25 H 1.09002 * 109.47712 * 149.99383 * 1 2 3 26 26 H 1.07996 * 126.04167 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00272 * 174.99888 * 10 9 7 28 28 H 1.08991 * 110.66855 * 278.15603 * 16 15 5 29 29 H 1.09009 * 110.66686 * 41.28580 * 16 15 5 30 30 H 1.09007 * 110.72534 * 204.22919 * 17 16 15 31 31 H 1.09000 * 110.87306 * 81.02029 * 17 16 15 32 32 H 1.09000 * 110.30743 * 263.03946 * 18 17 16 33 33 H 1.08993 * 110.30686 * 140.87228 * 18 17 16 34 34 H 1.09001 * 109.92433 * 333.51114 * 19 15 5 35 35 H 1.09006 * 109.91622 * 94.80569 * 19 15 5 36 36 H 1.08999 * 109.47312 * 269.71784 * 21 20 4 37 37 H 1.09001 * 109.47114 * 29.72049 * 21 20 4 38 38 H 1.08999 * 109.47103 * 149.72152 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 0.0063 5 6 4.8350 1.5988 0.0143 6 1 5.3873 1.4639 -0.9158 7 6 5.7158 1.2282 1.1797 8 1 5.3102 1.2163 2.1806 9 6 7.0391 0.9043 0.9681 10 7 7.5619 1.0255 -0.2326 11 14 8.0894 0.2931 2.3868 12 1 7.4990 -0.9525 2.9391 13 1 9.4647 0.0152 1.9006 14 1 8.1393 1.3303 3.4485 15 7 4.4224 3.0031 0.1395 16 6 3.9206 3.2905 1.5076 17 6 4.0425 4.8314 1.6135 18 6 5.3562 5.1273 0.8541 19 6 5.5695 3.9131 -0.0687 20 7 3.6087 -0.6341 0.0006 21 6 4.7899 -1.5008 0.0010 22 7 2.2741 -1.0599 0.0005 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9923 2.1597 -0.0004 27 1 8.5095 0.8676 -0.3672 28 1 2.8812 2.9788 1.6095 29 1 4.5447 2.8028 2.2566 30 1 4.1211 5.1415 2.6556 31 1 3.1982 5.3220 1.1292 32 1 6.1857 5.2200 1.5551 33 1 5.2551 6.0380 0.2639 34 1 6.4982 3.4061 0.1933 35 1 5.6015 4.2382 -1.1087 36 1 5.0833 -1.7156 -1.0265 37 1 5.6091 -0.9984 0.5154 38 1 4.5560 -2.4335 0.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:10 Heat of formation + Delta-G solvation = 62.241386 kcal Electronic energy + Delta-G solvation = -19231.421557 eV Core-core repulsion = 16495.703288 eV Total energy + Delta-G solvation = -2735.718269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.98718 -39.45771 -35.61139 -34.28436 -33.17460 -30.53577 -30.00231 -29.30766 -28.03586 -26.10249 -24.90707 -21.86009 -21.51436 -20.68751 -20.07856 -18.45291 -17.32560 -16.85417 -16.24532 -16.19360 -15.94593 -14.91318 -14.70070 -14.42863 -14.24327 -14.16088 -13.87386 -13.52851 -13.18522 -13.11836 -12.86835 -12.78623 -12.58335 -12.48723 -12.31344 -11.96472 -11.82859 -11.73091 -11.40269 -11.25445 -11.07938 -10.69765 -9.75296 -9.11896 -8.94602 -8.16634 -6.37260 1.22262 1.34106 1.39129 1.43994 1.88239 2.10692 2.34260 2.99450 3.61445 3.91067 4.06213 4.09507 4.25681 4.35181 4.44885 4.48198 4.70507 4.76761 4.85754 4.91256 4.92351 4.97602 5.08260 5.09751 5.14297 5.21473 5.25840 5.27878 5.39145 5.41640 5.57944 5.62712 5.68528 6.01537 6.10581 6.32503 6.44260 6.58627 6.78990 7.12054 7.30426 8.79388 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.011066 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.747278 B = 2529.763629 C = 3755.656180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.054 3.946 3 C -0.294 4.294 4 C 0.122 3.878 5 C 0.246 3.754 6 H 0.057 0.943 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.050 3.950 10 N -0.900 5.900 11 Si 0.932 3.068 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.276 1.276 15 N -0.513 5.513 16 C 0.035 3.965 17 C -0.112 4.112 18 C -0.120 4.120 19 C 0.045 3.955 20 N -0.376 5.376 21 C 0.100 3.900 22 N -0.352 5.352 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.269 0.731 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 3.438 1.982 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 C -0.323 4.323 4 C -0.008 4.008 5 C 0.137 3.863 6 H 0.075 0.925 7 C -0.576 4.576 8 H 0.064 0.936 9 C -0.153 4.153 10 N -0.538 5.538 11 Si 0.758 3.242 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.201 1.201 15 N -0.237 5.237 16 C -0.093 4.093 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.084 4.084 20 N -0.157 5.157 21 C -0.041 4.041 22 N -0.176 5.176 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.167 0.833 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.404 2.044 1.432 6.873 hybrid contribution 1.813 0.050 1.125 2.134 sum -4.591 2.094 2.557 5.657 Atomic orbital electron populations 1.20200 0.84157 1.03852 1.03553 1.22950 0.98433 0.90595 0.99111 1.21187 0.90820 0.99630 1.20651 1.21846 0.98282 0.84623 0.96019 1.17944 0.86145 0.84624 0.97573 0.92478 1.21269 0.95276 1.47839 0.93261 0.93601 1.25428 0.98619 0.94173 0.97087 1.69940 1.13407 1.48436 1.21979 0.86012 0.78412 0.79304 0.80474 1.19631 1.20537 1.20120 1.64902 1.29042 1.04162 1.25562 1.23159 0.99312 0.95777 0.91044 1.22428 0.97606 0.94724 1.00266 1.22315 0.97822 0.97574 0.98066 1.22558 0.94087 0.93210 0.98515 1.48277 1.05032 1.04852 1.57532 1.21970 0.85020 0.94365 1.02743 1.77041 0.87008 1.24149 1.29401 0.89700 0.88933 0.90831 0.83264 0.92088 0.91346 0.94648 0.90579 0.90281 0.92406 0.90085 0.94145 0.92824 0.91852 0.88383 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 10.45 71.24 0.74 -0.82 16 2 C 0.05 2.11 7.22 43.10 0.31 2.42 16 3 C -0.29 -12.31 8.95 21.99 0.20 -12.11 16 4 C 0.12 5.67 5.98 41.41 0.25 5.91 16 5 C 0.25 11.85 2.27 43.42 0.10 11.95 16 6 H 0.06 3.16 6.91 -2.38 -0.02 3.14 16 7 C -0.54 -26.62 4.56 25.60 0.12 -26.50 16 8 H 0.05 2.39 6.47 -2.91 -0.02 2.37 16 9 C 0.05 2.47 3.74 84.65 0.32 2.78 16 10 N -0.90 -46.24 12.31 21.44 0.26 -45.98 16 11 Si 0.93 39.85 29.54 68.60 2.03 41.88 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 N -0.51 -21.96 4.68 -866.64 -4.05 -26.02 16 16 C 0.04 1.35 5.57 86.65 0.48 1.84 16 17 C -0.11 -3.42 7.06 31.80 0.22 -3.19 16 18 C -0.12 -3.85 6.93 31.47 0.22 -3.63 16 19 C 0.04 1.84 6.46 86.45 0.56 2.39 16 20 N -0.38 -17.24 4.01 -356.03 -1.43 -18.67 16 21 C 0.10 4.18 11.22 127.77 1.43 5.61 16 22 N -0.35 -15.36 12.58 -47.39 -0.60 -15.96 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.15 5.84 6.81 -2.91 -0.02 5.82 16 27 H 0.27 13.31 8.32 -92.71 -0.77 12.54 16 28 H 0.07 2.57 6.34 -2.39 -0.02 2.56 16 29 H 0.04 1.55 5.54 -2.38 -0.01 1.54 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.93 6.25 -2.39 -0.01 1.91 16 35 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.10 4.46 4.87 -2.39 -0.01 4.45 16 38 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -57.25 297.79 2.21 -55.05 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.05 Total: 23.04 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.95 Total: -13.34 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -5.81 Total: -106.62 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -57.25 2.21 -55.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.286 kcal (2) G-P(sol) polarization free energy of solvation -57.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds