Wall clock time and date at job start Mon Mar 30 2020 03:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34947 * 126.12771 * 2 1 4 4 H 0.97002 * 126.03805 * 359.97438 * 3 2 1 5 5 N 1.40082 * 107.92939 * 180.02562 * 3 2 1 6 6 C 1.30846 * 108.20009 * 359.72110 * 5 3 2 7 7 C 1.35316 * 126.12744 * 180.02562 * 2 1 3 8 8 C 1.50701 * 126.03701 * 359.97438 * 7 2 1 9 9 C 1.52994 * 110.06533 * 305.19974 * 8 7 2 10 10 C 1.53994 * 109.91709 * 66.40713 * 8 7 2 11 11 H 1.08997 * 110.38990 * 239.53507 * 10 8 7 12 12 C 1.50696 * 110.31093 * 1.66185 * 10 8 7 13 13 H 1.08000 * 120.00294 * 31.28092 * 12 10 8 14 14 C 1.37879 * 120.00146 * 211.28367 * 12 10 8 15 15 N 1.31509 * 120.00441 * 184.61106 * 14 12 10 16 16 Si 1.86800 * 119.99651 * 4.61274 * 14 12 10 17 17 H 1.48501 * 109.46907 * 93.24611 * 16 14 12 18 18 H 1.48497 * 109.47140 * 213.24037 * 16 14 12 19 19 H 1.48497 * 109.47405 * 333.24439 * 16 14 12 20 20 C 1.54603 * 105.13906 * 120.57438 * 10 8 7 21 21 C 1.54934 * 102.91794 * 21.95768 * 20 10 8 22 22 N 1.47903 * 109.91251 * 183.99492 * 8 7 2 23 23 C 1.46901 * 110.99707 * 94.80788 * 22 8 7 24 24 H 1.08997 * 109.47078 * 269.98107 * 1 2 3 25 25 H 1.09006 * 109.46591 * 29.97455 * 1 2 3 26 26 H 1.08995 * 109.47065 * 149.97498 * 1 2 3 27 27 H 1.08003 * 125.89573 * 180.26372 * 6 5 3 28 28 H 1.08998 * 109.47253 * 300.25408 * 9 8 7 29 29 H 1.09002 * 109.47464 * 60.25433 * 9 8 7 30 30 H 1.09000 * 109.46820 * 180.24948 * 9 8 7 31 31 H 0.96993 * 120.00497 * 180.02562 * 15 14 12 32 32 H 1.08991 * 110.72678 * 263.60033 * 20 10 8 33 33 H 1.09003 * 110.87252 * 140.38537 * 20 10 8 34 34 H 1.09003 * 110.66674 * 204.14502 * 21 20 10 35 35 H 1.09007 * 110.81429 * 81.08812 * 21 20 10 36 36 H 1.09004 * 109.46876 * 177.27329 * 23 22 8 37 37 H 1.09003 * 109.46726 * 297.26350 * 23 22 8 38 38 H 1.08992 * 109.47638 * 57.26552 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3027 1.0900 0.0000 4 1 2.0056 2.0134 -0.0004 5 7 3.6334 0.6525 -0.0006 6 6 3.6335 -0.6560 0.0051 7 6 2.3048 -1.0930 -0.0005 8 6 1.8433 -2.5275 -0.0006 9 6 0.8943 -2.7737 1.1740 10 6 1.1305 -2.8492 -1.3272 11 1 0.1047 -3.1667 -1.1399 12 6 1.1474 -1.6465 -2.2351 13 1 1.9725 -0.9508 -2.1945 14 6 0.1095 -1.4343 -3.1176 15 7 0.1668 -0.4365 -3.9724 16 14 -1.3781 -2.5640 -3.0989 17 1 -2.4270 -1.9867 -2.2204 18 1 -1.9101 -2.7047 -4.4782 19 1 -0.9798 -3.8984 -2.5834 20 6 1.9443 -4.0052 -1.9529 21 6 2.6703 -4.6193 -0.7297 22 7 3.0096 -3.4320 0.0957 23 6 3.2642 -3.8159 1.4906 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 4.5084 -1.2892 0.0103 28 1 1.4112 -2.5602 2.1096 29 1 0.0255 -2.1220 1.0820 30 1 0.5702 -3.8144 1.1672 31 1 -0.5635 -0.2870 -4.5930 32 1 2.6640 -3.6228 -2.6765 33 1 1.2843 -4.7378 -2.4175 34 1 3.5745 -5.1421 -1.0415 35 1 2.0082 -5.2912 -0.1834 36 1 4.0964 -4.5189 1.5278 37 1 3.5124 -2.9280 2.0722 38 1 2.3730 -4.2854 1.9068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:48 Heat of formation + Delta-G solvation = 70.115552 kcal Electronic energy + Delta-G solvation = -19949.013170 eV Core-core repulsion = 17213.636350 eV Total energy + Delta-G solvation = -2735.376820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.21387 -39.95658 -35.11349 -33.55029 -32.84709 -32.65448 -30.00333 -28.21431 -27.91390 -25.94251 -24.55141 -22.47920 -21.57952 -21.36007 -19.13600 -18.85873 -17.77812 -16.48551 -16.18973 -15.92421 -15.58050 -14.94760 -14.67046 -14.43413 -14.31507 -13.91087 -13.77662 -13.63495 -13.40723 -13.15942 -12.82628 -12.70917 -12.37271 -12.31937 -12.04480 -11.79080 -11.70441 -11.48073 -11.40543 -11.10464 -10.72652 -10.48804 -10.09625 -9.05520 -8.72219 -8.05305 -6.01489 1.27973 1.38273 1.44055 1.50448 2.23349 2.33507 2.47288 3.25990 3.30763 4.13992 4.19947 4.22375 4.35116 4.37944 4.52234 4.54560 4.67544 4.72251 4.81417 4.83758 4.84686 4.90984 4.99925 5.12444 5.17868 5.24691 5.36234 5.42348 5.42926 5.44817 5.58044 5.71836 5.88691 6.10180 6.33486 6.48678 6.65774 6.73902 7.03668 7.08451 7.56720 9.09558 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.013252 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.567592 B = 2112.454042 C = 2934.003927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.111 3.889 3 N -0.484 5.484 4 H 0.438 0.562 5 N -0.346 5.346 6 C 0.059 3.941 7 C -0.184 4.184 8 C 0.178 3.822 9 C -0.163 4.163 10 C 0.008 3.992 11 H 0.038 0.962 12 C -0.454 4.454 13 H 0.041 0.959 14 C 0.019 3.981 15 N -0.953 5.953 16 Si 0.910 3.090 17 H -0.265 1.265 18 H -0.303 1.303 19 H -0.244 1.244 20 C -0.124 4.124 21 C 0.045 3.955 22 N -0.524 5.524 23 C 0.017 3.983 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.182 0.818 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.256 0.744 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -6.061 12.009 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.018 4.018 3 N -0.194 5.194 4 H 0.282 0.718 5 N -0.170 5.170 6 C -0.126 4.126 7 C -0.195 4.195 8 C 0.087 3.913 9 C -0.222 4.222 10 C -0.012 4.012 11 H 0.056 0.944 12 C -0.493 4.493 13 H 0.059 0.941 14 C -0.177 4.177 15 N -0.596 5.596 16 Si 0.736 3.264 17 H -0.190 1.190 18 H -0.231 1.231 19 H -0.168 1.168 20 C -0.163 4.163 21 C -0.083 4.083 22 N -0.247 5.247 23 C -0.131 4.131 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.199 0.801 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.102 -4.713 11.709 12.670 hybrid contribution -1.978 -0.619 -0.634 2.167 sum -0.876 -5.331 11.075 12.323 Atomic orbital electron populations 1.20546 0.87318 1.03951 1.02329 1.20740 0.94686 0.87216 0.99115 1.46062 1.03905 1.08301 1.61084 0.71840 1.77073 0.97690 1.13867 1.28332 1.23712 0.98672 0.91228 0.98972 1.19262 0.91583 0.94599 1.14082 1.19920 0.88469 0.88047 0.94835 1.22466 0.99941 1.01485 0.98274 1.20137 0.94621 0.93857 0.92586 0.94419 1.21085 1.04959 1.06780 1.16437 0.94066 1.25628 1.00739 0.96142 0.95156 1.70066 1.33476 1.33212 1.22798 0.86289 0.81374 0.81850 0.76847 1.19001 1.23080 1.16791 1.22718 0.98741 0.97504 0.97335 1.23145 0.99235 0.92034 0.93866 1.64554 1.37275 1.12561 1.10328 1.22558 1.00781 1.00812 0.88958 0.88996 0.92419 0.89973 0.80078 0.91488 0.91862 0.92242 0.93499 0.93532 0.92748 0.89766 0.93132 0.90703 0.91928 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 8.20 71.24 0.58 -2.34 16 2 C 0.11 4.36 5.63 41.41 0.23 4.59 16 3 N -0.48 -18.50 7.36 -48.00 -0.35 -18.85 16 4 H 0.44 14.00 8.96 -213.33 -1.91 12.09 16 5 N -0.35 -14.35 12.70 -57.02 -0.72 -15.07 16 6 C 0.06 2.38 11.34 85.23 0.97 3.35 16 7 C -0.18 -7.31 3.11 -20.14 -0.06 -7.38 16 8 C 0.18 6.44 0.58 2.92 0.00 6.44 16 9 C -0.16 -4.87 6.75 71.98 0.49 -4.38 16 10 C 0.01 0.32 1.44 -10.66 -0.02 0.31 16 11 H 0.04 1.57 4.82 -2.39 -0.01 1.56 16 12 C -0.45 -23.39 5.35 25.60 0.14 -23.26 16 13 H 0.04 2.49 6.16 -2.91 -0.02 2.47 16 14 C 0.02 1.00 5.13 84.66 0.43 1.43 16 15 N -0.95 -57.06 13.96 21.45 0.30 -56.77 16 16 Si 0.91 41.16 27.00 68.60 1.85 43.01 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 19 H -0.24 -10.17 6.47 99.48 0.64 -9.52 16 20 C -0.12 -4.86 6.60 31.80 0.21 -4.65 16 21 C 0.04 1.38 6.55 86.65 0.57 1.95 16 22 N -0.52 -16.97 4.46 -864.13 -3.86 -20.83 16 23 C 0.02 0.43 8.33 127.69 1.06 1.49 16 24 H 0.09 2.52 7.86 -2.39 -0.02 2.50 16 25 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.08 3.26 4.70 -2.39 -0.01 3.25 16 27 H 0.18 6.77 7.87 -2.91 -0.02 6.74 16 28 H 0.07 1.79 6.66 -2.39 -0.02 1.78 16 29 H 0.06 1.88 5.51 -2.39 -0.01 1.87 16 30 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.05 2.04 7.86 -2.39 -0.02 2.02 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.05 1.38 8.00 -2.38 -0.02 1.36 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.06 1.59 7.87 -2.39 -0.02 1.57 16 38 H 0.04 0.90 6.14 -2.39 -0.01 0.89 16 Total: -1.00 -64.05 286.08 0.92 -63.13 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.90 Total: 27.81 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.60 Total: -22.44 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.64 Total: -111.52 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.85 Total: 43.01 kcal Total: -64.05 0.92 -63.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.249 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds