Wall clock time and date at job start Mon Mar 30 2020 04:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34292 * 125.96531 * 2 1 4 4 C 1.30031 * 109.23423 * 180.02562 * 3 2 1 5 5 N 1.35481 * 108.62519 * 0.02562 * 4 3 2 6 6 C 1.34855 * 125.96464 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.65664 * 359.92156 * 6 2 1 8 8 H 1.09005 * 109.47016 * 345.70552 * 7 6 2 9 9 N 1.46902 * 109.47501 * 225.70655 * 7 6 2 10 10 C 1.53004 * 109.46961 * 105.70555 * 7 6 2 11 11 C 1.50700 * 109.47010 * 185.00526 * 10 7 6 12 12 H 1.07999 * 120.00447 * 359.97438 * 11 10 7 13 13 C 1.37878 * 119.99674 * 180.02562 * 11 10 7 14 14 N 1.31514 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99900 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46932 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46922 * 119.99665 * 15 13 11 18 18 H 1.48503 * 109.46883 * 239.99718 * 15 13 11 19 19 C 1.46474 * 124.83936 * 179.97438 * 5 4 3 20 20 C 1.53260 * 108.79519 * 342.91578 * 19 5 4 21 21 C 1.53148 * 109.49495 * 50.38345 * 20 19 5 22 22 C 1.51044 * 127.43707 * 180.15646 * 4 3 2 23 23 H 1.09004 * 109.46712 * 264.77953 * 1 2 3 24 24 H 1.09000 * 109.47181 * 24.77988 * 1 2 3 25 25 H 1.09000 * 109.47368 * 144.78563 * 1 2 3 26 26 H 1.00906 * 110.99586 * 293.75331 * 9 7 6 27 27 H 1.00896 * 111.00211 * 57.70626 * 9 7 6 28 28 H 1.09003 * 109.46772 * 305.00040 * 10 7 6 29 29 H 1.08995 * 109.47108 * 64.99965 * 10 7 6 30 30 H 0.96993 * 120.00038 * 179.97438 * 14 13 11 31 31 H 1.09008 * 109.58394 * 223.12076 * 19 5 4 32 32 H 1.08998 * 109.58391 * 102.70885 * 19 5 4 33 33 H 1.09000 * 109.46712 * 290.37493 * 20 19 5 34 34 H 1.09004 * 109.46612 * 170.39077 * 20 19 5 35 35 H 1.08994 * 109.51140 * 170.58378 * 21 20 19 36 36 H 1.09007 * 109.50882 * 50.44151 * 21 20 19 37 37 H 1.08996 * 109.71849 * 44.26593 * 22 4 3 38 38 H 1.08995 * 109.71334 * 283.65843 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2957 1.0869 0.0000 4 6 3.5409 0.7126 -0.0005 5 7 3.5857 -0.6415 -0.0015 6 6 2.2990 -1.0915 -0.0005 7 6 1.8488 -2.5297 0.0005 8 1 0.7902 -2.5789 0.2555 9 7 2.6267 -3.2856 0.9913 10 6 2.0676 -3.1335 -1.3882 11 6 1.5056 -4.5313 -1.4224 12 1 1.0394 -4.9477 -0.5416 13 6 1.5875 -5.2792 -2.5778 14 7 2.1557 -4.7725 -3.6502 15 14 0.8915 -7.0122 -2.6201 16 1 0.3104 -7.3446 -1.2946 17 1 -0.1657 -7.0958 -3.6596 18 1 1.9770 -7.9739 -2.9394 19 6 4.8149 -1.4381 -0.0029 20 6 5.9832 -0.5425 -0.4293 21 6 5.9740 0.7415 0.4053 22 6 4.7655 1.5968 0.0025 23 1 -0.3633 -0.0935 1.0235 24 1 -0.3633 0.9330 -0.4307 25 1 -0.3634 -0.8396 -0.5926 26 1 3.5977 -3.3411 0.7226 27 1 2.5285 -2.8834 1.9114 28 1 1.5625 -2.5204 -2.1346 29 1 3.1351 -3.1656 -1.6064 30 1 2.2137 -5.2987 -4.4629 31 1 4.7134 -2.2654 -0.7054 32 1 4.9993 -1.8270 0.9985 33 1 5.8812 -0.2904 -1.4848 34 1 6.9230 -1.0717 -0.2714 35 1 6.8919 1.3004 0.2236 36 1 5.9049 0.4876 1.4632 37 1 4.6332 2.4057 0.7210 38 1 4.9222 2.0113 -0.9933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260932168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:46 Heat of formation + Delta-G solvation = 13.288175 kcal Electronic energy + Delta-G solvation = -18825.053569 eV Core-core repulsion = 16087.212529 eV Total energy + Delta-G solvation = -2737.841039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.38501 -37.72524 -37.32312 -34.68953 -33.67136 -32.26047 -30.38163 -29.77919 -28.05088 -26.14910 -24.43352 -23.45320 -22.00072 -20.91119 -19.84750 -18.51652 -17.37267 -17.06152 -16.75028 -16.34878 -15.57040 -15.29835 -15.22029 -15.02771 -14.85267 -14.36453 -14.12527 -13.85050 -13.43689 -13.26249 -13.18117 -12.79930 -12.61201 -12.50072 -12.35767 -12.06161 -11.99909 -11.89080 -11.59994 -11.26823 -10.95830 -10.56365 -10.35836 -9.64736 -8.93691 -8.15632 -6.23237 1.05716 1.41477 1.42620 1.56427 1.86964 2.07183 2.44890 3.17335 3.34277 3.56740 3.67870 3.73683 3.78378 3.99327 4.17923 4.25565 4.33844 4.40314 4.45357 4.59814 4.78223 4.80394 4.84397 4.86233 4.91234 5.02108 5.04545 5.15533 5.24778 5.38293 5.42595 5.60656 5.81199 5.85615 6.18847 6.30569 6.38116 6.63115 6.90941 7.15324 7.44370 8.96144 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.006517 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.945851 B = 4295.649753 C = 4829.575557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.032 4.032 3 N -0.521 5.521 4 C 0.192 3.808 5 N -0.447 5.447 6 C -0.053 4.053 7 C 0.186 3.814 8 H 0.087 0.913 9 N -0.824 5.824 10 C 0.050 3.950 11 C -0.508 4.508 12 H 0.064 0.936 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.963 3.037 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.281 1.281 19 C 0.089 3.911 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.031 4.031 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.336 0.664 27 H 0.339 0.661 28 H -0.017 1.017 29 H -0.009 1.009 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 9.870 9.686 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.160 4.160 3 N -0.241 5.241 4 C -0.070 4.070 5 N -0.130 5.130 6 C -0.171 4.171 7 C 0.073 3.927 8 H 0.105 0.895 9 N -0.353 5.353 10 C 0.013 3.987 11 C -0.546 4.546 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.580 5.580 15 Si 0.789 3.211 16 H -0.187 1.187 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.033 4.033 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.070 4.070 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.001 0.999 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.031 9.882 9.343 15.793 hybrid contribution 0.199 -0.869 -0.568 1.057 sum 8.229 9.013 8.775 15.032 Atomic orbital electron populations 1.20004 0.86833 1.02424 1.02526 1.20970 0.97414 0.88083 1.09551 1.69823 1.00979 1.30962 1.22337 1.24033 0.95636 0.82226 1.05116 1.45255 1.06121 1.07470 1.54201 1.22400 0.84400 0.99172 1.11131 1.19891 0.97518 0.81421 0.93909 0.89538 1.58779 1.15272 1.56891 1.04360 1.18886 0.94817 0.94818 0.90177 1.21486 1.36603 0.99335 0.97150 0.91742 1.25914 0.96064 1.02648 0.95353 1.70113 1.46255 1.38897 1.02723 0.85416 0.77967 0.79476 0.78261 1.18670 1.20858 1.20660 1.22324 0.82516 0.94930 1.03494 1.21937 0.97321 0.96741 1.00682 1.21667 0.98248 0.95063 1.00060 1.20399 0.86581 0.95716 1.04280 0.90324 0.91144 0.91888 0.84983 0.84780 0.99888 0.99110 0.93124 0.90982 0.88285 0.91852 0.86405 0.86855 0.90758 0.87789 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 9.90 71.24 0.70 -1.32 16 2 C -0.03 -1.25 7.10 41.40 0.29 -0.95 16 3 N -0.52 -20.03 11.24 -175.68 -1.97 -22.01 16 4 C 0.19 6.30 7.65 138.23 1.06 7.35 16 5 N -0.45 -15.06 3.14 -499.35 -1.57 -16.62 16 6 C -0.05 -2.10 5.82 41.08 0.24 -1.86 16 7 C 0.19 7.80 2.94 44.17 0.13 7.93 16 8 H 0.09 3.72 7.30 -2.38 -0.02 3.70 16 9 N -0.82 -29.98 8.89 -171.79 -1.53 -31.51 16 10 C 0.05 2.66 4.55 29.85 0.14 2.80 16 11 C -0.51 -28.67 8.84 25.60 0.23 -28.45 16 12 H 0.06 3.59 7.74 -2.91 -0.02 3.56 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 15 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C 0.09 2.36 5.22 86.47 0.45 2.82 16 20 C -0.13 -2.41 5.94 30.73 0.18 -2.23 16 21 C -0.11 -1.69 5.96 30.79 0.18 -1.50 16 22 C -0.03 -0.66 6.33 30.10 0.19 -0.47 16 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 2.20 7.70 -2.39 -0.02 2.18 16 26 H 0.34 11.62 6.21 -89.69 -0.56 11.07 16 27 H 0.34 10.50 9.00 -89.70 -0.81 9.69 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H -0.01 -0.52 6.74 -2.39 -0.02 -0.54 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.07 2.34 6.33 -2.38 -0.02 2.33 16 32 H 0.10 2.18 7.66 -2.39 -0.02 2.16 16 33 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.07 8.12 -2.38 -0.02 1.05 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -71.95 303.33 1.20 -70.75 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.30 Total: 25.04 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.26 Total: -15.59 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -4.78 Total: -127.16 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.95 1.20 -70.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260932168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.039 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds