Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30837 * 125.89619 * 2 1 4 4 N 1.40092 * 108.20125 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03557 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.27387 * 180.66086 * 5 4 3 7 7 C 1.54599 * 110.31012 * 302.85731 * 5 4 3 8 8 C 1.54938 * 102.92296 * 96.95468 * 7 5 4 9 9 N 1.48540 * 103.22488 * 37.41945 * 8 7 5 10 10 C 1.47902 * 105.81727 * 320.78843 * 9 8 7 11 11 C 1.34942 * 107.92443 * 359.75799 * 4 3 2 12 12 C 1.50707 * 126.12512 * 180.23995 * 11 4 3 13 13 C 1.35318 * 107.74711 * 0.38736 * 11 4 3 14 14 C 1.50696 * 126.03829 * 179.87565 * 13 11 4 15 15 C 1.50706 * 109.47259 * 269.71395 * 14 13 11 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 H 1.08996 * 109.47426 * 270.02932 * 1 2 3 24 24 H 1.09003 * 109.47023 * 30.03041 * 1 2 3 25 25 H 1.09001 * 109.47090 * 150.02668 * 1 2 3 26 26 H 1.08998 * 110.72546 * 215.31901 * 7 5 4 27 27 H 1.08996 * 110.72404 * 338.59984 * 7 5 4 28 28 H 1.08999 * 110.67233 * 278.98312 * 8 7 5 29 29 H 1.09002 * 110.66726 * 155.84848 * 8 7 5 30 30 H 1.00902 * 110.99831 * 81.30217 * 9 8 7 31 31 H 1.09000 * 109.91687 * 265.97890 * 10 9 8 32 32 H 1.09000 * 110.08128 * 144.77447 * 10 9 8 33 33 H 1.08995 * 109.46728 * 270.19714 * 12 11 4 34 34 H 1.08996 * 109.47023 * 30.20095 * 12 11 4 35 35 H 1.09001 * 109.46987 * 150.20145 * 12 11 4 36 36 H 1.09001 * 109.47545 * 149.71736 * 14 13 11 37 37 H 1.09006 * 109.47511 * 29.71401 * 14 13 11 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0003 6 1 5.6992 0.8999 -0.0109 7 6 4.7575 2.4516 -1.2183 8 6 4.1637 3.7542 -0.6257 9 7 4.7667 3.8163 0.7304 10 6 4.7751 2.4250 1.2320 11 6 3.6142 -0.7153 0.0064 12 6 4.8350 -1.5989 0.0141 13 6 2.3271 -1.1330 0.0006 14 6 1.8599 -2.5657 0.0014 15 6 1.7047 -3.0442 -1.4192 16 1 1.9231 -2.3776 -2.2405 17 6 1.2841 -4.3329 -1.6705 18 7 1.0177 -5.1445 -0.6705 19 14 1.0911 -4.9258 -3.4314 20 1 -0.2909 -4.6485 -3.8985 21 1 2.0604 -4.2137 -4.3025 22 1 1.3506 -6.3867 -3.4931 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5134 26 1 5.7639 2.6248 -1.5993 27 1 4.1109 2.0541 -2.0006 28 1 3.0777 3.6875 -0.5612 29 1 4.4625 4.6181 -1.2195 30 1 5.7020 4.1930 0.6933 31 1 3.8798 2.2387 1.8252 32 1 5.6645 2.2508 1.8375 33 1 5.1347 -1.8134 -1.0116 34 1 5.6484 -1.0902 0.5316 35 1 4.6048 -2.5322 0.5281 36 1 0.9009 -2.6349 0.5148 37 1 2.5932 -3.1868 0.5159 38 1 1.1176 -4.8365 0.2439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = 40.398340 kcal Electronic energy + Delta-G solvation = -18567.358534 eV Core-core repulsion = 15830.693080 eV Total energy + Delta-G solvation = -2736.665455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33567 -39.40684 -35.85029 -34.58383 -33.18984 -31.00928 -30.11337 -29.89162 -27.51742 -27.05731 -24.72173 -22.98410 -22.16655 -20.55975 -19.82209 -18.77486 -17.90496 -17.36521 -16.36882 -15.68143 -15.48820 -15.25650 -14.96740 -14.77554 -14.23957 -14.17251 -14.05413 -13.57580 -13.43244 -13.35881 -13.15921 -12.98170 -12.80794 -12.54759 -12.43724 -12.22853 -12.11557 -12.03495 -11.91341 -11.26784 -10.91158 -10.49703 -9.97301 -9.65133 -9.04195 -8.51929 -6.29912 0.93685 1.52612 1.59696 1.61384 1.79390 1.90843 2.60064 3.13053 3.21258 3.41835 3.61118 3.74857 3.82826 4.01351 4.15708 4.22973 4.28593 4.41841 4.48902 4.63307 4.69820 4.74250 4.76356 4.79157 4.89449 4.90412 4.98493 5.04523 5.12108 5.18355 5.34657 5.54091 5.63240 5.85645 6.06989 6.24830 6.29801 6.46198 6.67216 6.87925 7.48365 8.79038 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.005689 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.178805 B = 4920.290329 C = 5060.375930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.052 3.948 3 N -0.309 5.309 4 N -0.363 5.363 5 C 0.122 3.878 6 H 0.130 0.870 7 C -0.156 4.156 8 C 0.051 3.949 9 N -0.672 5.672 10 C 0.045 3.955 11 C 0.062 3.938 12 C -0.075 4.075 13 C -0.223 4.223 14 C 0.090 3.910 15 C -0.588 4.588 16 H 0.033 0.967 17 C -0.033 4.033 18 N -0.938 5.938 19 Si 1.115 2.885 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.280 1.280 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.354 0.646 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.069 0.931 36 H -0.007 1.007 37 H -0.003 1.003 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.089 15.271 0.593 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 N -0.133 5.133 4 N -0.147 5.147 5 C 0.019 3.981 6 H 0.147 0.853 7 C -0.196 4.196 8 C -0.078 4.078 9 N -0.300 5.300 10 C -0.086 4.086 11 C -0.064 4.064 12 C -0.134 4.134 13 C -0.233 4.233 14 C 0.052 3.948 15 C -0.626 4.626 16 H 0.051 0.949 17 C -0.230 4.230 18 N -0.576 5.576 19 Si 0.937 3.063 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.205 1.205 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.172 0.828 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.011 0.989 37 H 0.015 0.985 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.251 15.613 0.065 18.678 hybrid contribution 0.656 -0.376 0.571 0.947 sum 10.907 15.237 0.636 18.750 Atomic orbital electron populations 1.20075 0.86292 1.02809 1.02867 1.22486 0.97782 0.90510 1.00534 1.77029 0.87148 1.22178 1.26912 1.48530 1.04899 1.03337 1.57975 1.22963 0.84555 0.92518 0.98081 0.85258 1.23405 1.03307 0.96411 0.96450 1.23041 0.99616 0.96645 0.88537 1.62567 1.26575 1.18258 1.22625 1.23020 1.03042 0.87096 0.95457 1.21089 0.97357 0.85022 1.02925 1.20353 0.92142 0.97500 1.03374 1.20162 0.92407 0.96799 1.13976 1.17422 0.93633 0.87872 0.95863 1.22181 1.48482 0.99487 0.92449 0.94861 1.27220 0.93152 0.93844 1.08785 1.70880 1.47972 1.38642 1.00062 0.82953 0.77453 0.75798 0.70095 1.20026 1.20082 1.20526 0.90121 0.90161 0.91822 0.86897 0.92577 0.92358 0.88111 0.82849 0.92767 0.87717 0.90445 0.88513 0.91211 0.98900 0.98486 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 10.12 71.24 0.72 -1.64 16 2 C 0.05 2.27 7.22 43.10 0.31 2.58 16 3 N -0.31 -12.43 12.32 -47.39 -0.58 -13.02 16 4 N -0.36 -12.69 3.20 -310.15 -0.99 -13.68 16 5 C 0.12 2.90 3.77 45.87 0.17 3.07 16 6 H 0.13 2.37 6.75 -2.39 -0.02 2.36 16 7 C -0.16 -3.28 6.71 31.80 0.21 -3.07 16 8 C 0.05 1.05 7.55 86.65 0.65 1.71 16 9 N -0.67 -12.92 7.51 -502.17 -3.77 -16.69 16 10 C 0.04 0.97 7.27 86.45 0.63 1.59 16 11 C 0.06 2.46 6.93 41.41 0.29 2.74 16 12 C -0.08 -2.39 9.74 71.24 0.69 -1.70 16 13 C -0.22 -10.50 5.29 -20.15 -0.11 -10.61 16 14 C 0.09 4.88 4.23 29.10 0.12 5.00 16 15 C -0.59 -34.24 9.09 25.60 0.23 -34.01 16 16 H 0.03 1.98 7.74 -2.91 -0.02 1.96 16 17 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 18 N -0.94 -58.04 13.65 21.45 0.29 -57.75 16 19 Si 1.11 51.21 29.90 68.60 2.05 53.26 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.06 2.68 7.92 -2.39 -0.02 2.66 16 26 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.35 4.51 8.92 -89.69 -0.80 3.71 16 31 H 0.05 1.59 7.82 -2.39 -0.02 1.58 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 2.17 7.14 -2.39 -0.02 2.16 16 35 H 0.07 2.44 7.14 -2.39 -0.02 2.42 16 36 H -0.01 -0.41 7.78 -2.39 -0.02 -0.43 16 37 H 0.00 -0.17 7.01 -2.38 -0.02 -0.18 16 38 H 0.26 16.06 7.22 -92.71 -0.67 15.39 16 Total: -1.00 -72.47 311.76 1.74 -70.74 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.35 Total: 12.90 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 4.39 Total: -35.76 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -5.06 Total: -101.14 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -72.47 1.74 -70.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.135 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds