Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30325 * 125.97762 * 2 1 4 4 N 1.39876 * 109.23264 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.67521 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.42234 * 165.88285 * 5 4 3 7 7 C 1.54908 * 110.37608 * 288.19817 * 5 4 3 8 8 C 1.55135 * 101.65487 * 155.89879 * 7 5 4 9 9 C 1.54318 * 103.01977 * 324.34855 * 8 7 5 10 10 N 1.47449 * 107.23433 * 22.28225 * 9 8 7 11 11 C 1.46897 * 110.99830 * 123.25888 * 10 9 8 12 12 C 1.34503 * 108.64982 * 0.24321 * 4 3 2 13 13 C 1.50700 * 126.40957 * 179.72513 * 12 4 3 14 14 C 1.39285 * 107.18544 * 359.61463 * 12 4 3 15 15 C 1.41598 * 126.55776 * 180.14292 * 14 12 4 16 16 H 1.08006 * 119.99426 * 35.57470 * 15 14 12 17 17 C 1.39684 * 120.00102 * 215.57243 * 15 14 12 18 18 N 1.31022 * 120.00605 * 20.15564 * 17 15 14 19 19 Si 1.86806 * 119.99954 * 200.15781 * 17 15 14 20 20 H 1.48499 * 109.47060 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47398 * 120.00017 * 19 17 15 22 22 H 1.48501 * 109.46986 * 240.00294 * 19 17 15 23 23 H 1.09001 * 109.47061 * 92.39012 * 1 2 3 24 24 H 1.08996 * 109.46945 * 212.38587 * 1 2 3 25 25 H 1.08999 * 109.47548 * 332.39110 * 1 2 3 26 26 H 1.08999 * 110.98776 * 37.80554 * 7 5 4 27 27 H 1.08998 * 111.01937 * 274.00372 * 7 5 4 28 28 H 1.08998 * 110.70990 * 205.96086 * 8 7 5 29 29 H 1.09008 * 110.85857 * 82.79934 * 8 7 5 30 30 H 1.09000 * 109.88717 * 262.87627 * 9 8 7 31 31 H 1.09000 * 109.89112 * 141.68595 * 9 8 7 32 32 H 1.08996 * 109.47388 * 59.87729 * 11 10 9 33 33 H 1.08996 * 109.47343 * 299.87601 * 11 10 9 34 34 H 1.08996 * 109.46874 * 179.87630 * 11 10 9 35 35 H 1.08997 * 109.47168 * 89.99230 * 13 12 4 36 36 H 1.09002 * 109.47131 * 209.99857 * 13 12 4 37 37 H 1.08999 * 109.46830 * 329.99522 * 13 12 4 38 38 H 0.97001 * 120.00978 * 179.72485 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6120 0.6516 -0.0006 5 6 4.7730 1.5451 -0.0013 6 1 5.6787 0.9920 0.2475 7 6 4.9232 2.2332 -1.3810 8 6 5.7168 3.5130 -1.0082 9 6 5.1496 3.8821 0.3787 10 7 4.5690 2.6549 0.9539 11 6 5.1743 2.3465 2.2564 12 6 3.6567 -0.6926 -0.0064 13 6 4.8986 -1.5463 -0.0148 14 6 2.3405 -1.1482 -0.0005 15 6 1.9155 -2.4989 -0.0007 16 1 2.4819 -3.2432 0.5393 17 6 0.7638 -2.8686 -0.6993 18 7 0.3009 -2.0992 -1.6535 19 14 -0.1168 -4.4600 -0.2730 20 1 0.6022 -5.1427 0.8325 21 1 -1.5072 -4.1578 0.1523 22 1 -0.1450 -5.3448 -1.4652 23 1 -0.3633 -0.0429 -1.0268 24 1 -0.3633 -0.8678 0.5504 25 1 -0.3634 0.9106 0.4762 26 1 3.9489 2.4859 -1.7994 27 1 5.4915 1.6082 -2.0698 28 1 5.5245 4.3090 -1.7275 29 1 6.7845 3.3029 -0.9444 30 1 4.3769 4.6435 0.2726 31 1 5.9500 4.2498 1.0208 32 1 4.9986 3.1739 2.9438 33 1 6.2471 2.1987 2.1326 34 1 4.7265 1.4381 2.6592 35 1 5.2021 -1.7563 1.0108 36 1 4.6918 -2.4834 -0.5317 37 1 5.7001 -1.0165 -0.5297 38 1 -0.4966 -2.3579 -2.1414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261358356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = 77.659887 kcal Electronic energy + Delta-G solvation = -18900.208278 eV Core-core repulsion = 16165.158605 eV Total energy + Delta-G solvation = -2735.049673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70789 -38.21404 -33.53235 -32.01981 -31.83266 -30.34317 -28.27695 -27.17839 -25.77178 -25.06510 -23.68068 -21.01810 -20.56272 -19.10204 -17.68875 -16.60002 -15.98866 -15.25588 -14.73417 -14.52918 -13.75598 -13.56860 -13.29920 -12.84718 -12.55491 -12.36575 -12.11158 -12.06598 -11.78226 -11.62289 -11.39660 -11.25166 -11.11065 -11.07120 -10.78736 -10.73006 -10.58943 -10.44748 -10.20251 -9.92981 -8.69417 -8.66399 -8.17017 -7.42314 -6.75730 -6.29415 -3.88632 3.11653 3.29229 3.34243 3.38986 3.70355 4.27048 4.28491 4.45508 4.80432 4.84769 5.00672 5.23318 5.43029 5.45274 5.48018 5.62457 5.69736 5.85336 5.94897 6.03871 6.12487 6.13123 6.23018 6.40942 6.46539 6.51215 6.72104 6.81626 7.01716 7.10138 7.20102 7.37017 7.50896 7.73036 7.85063 8.18727 8.67102 8.71134 9.19040 9.31583 9.59987 10.70641 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.006298 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.102918 B = 4444.968683 C = 4619.669117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C 0.055 3.945 3 N -0.301 5.301 4 N -0.372 5.372 5 C 0.335 3.665 6 H 0.074 0.926 7 C -0.134 4.134 8 C -0.141 4.141 9 C 0.051 3.949 10 N -0.531 5.531 11 C 0.027 3.973 12 C -0.086 4.086 13 C -0.049 4.049 14 C 0.007 3.993 15 C -0.458 4.458 16 H 0.067 0.933 17 C 0.079 3.921 18 N -0.823 5.823 19 Si 0.890 3.110 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.282 1.282 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 6.978 2.157 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.113 4.113 3 N -0.123 5.123 4 N -0.161 5.161 5 C 0.142 3.858 6 H 0.091 0.909 7 C -0.174 4.174 8 C -0.180 4.180 9 C -0.078 4.078 10 N -0.256 5.256 11 C -0.121 4.121 12 C -0.207 4.207 13 C -0.107 4.107 14 C -0.003 4.003 15 C -0.492 4.492 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.453 5.453 19 Si 0.716 3.284 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.208 1.208 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.127 8.351 2.111 11.843 hybrid contribution 0.435 -1.807 0.067 1.860 sum 8.562 6.544 2.178 10.995 Atomic orbital electron populations 1.19888 0.88589 0.98698 1.02232 1.22380 0.95770 0.91154 1.02010 1.76528 0.86502 1.23707 1.25603 1.47148 1.03273 1.02821 1.62889 1.21894 0.85579 0.86870 0.91488 0.90861 1.23020 1.01820 0.95888 0.96649 1.22773 0.99298 0.98432 0.97500 1.22727 0.97722 0.92930 0.94378 1.62943 1.56802 1.02899 1.02993 1.22477 0.95995 1.02300 0.91372 1.21023 0.96675 0.82972 1.19987 1.19825 0.92560 0.98552 0.99798 1.17659 0.87812 0.93716 1.01142 1.18492 1.08637 0.92468 1.29650 0.91525 1.25469 0.96911 0.97266 0.93631 1.69973 1.21187 1.37444 1.16703 0.86575 0.79835 0.83007 0.78958 1.19106 1.20281 1.20810 0.90403 0.92357 0.95216 0.89390 0.90672 0.90527 0.91579 0.90382 0.92786 0.91460 0.95938 0.91296 0.93942 0.91002 0.94497 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 8.57 36.00 0.31 -0.55 16 2 C 0.05 1.47 6.92 -81.84 -0.57 0.91 16 3 N -0.30 -7.81 12.37 34.00 0.42 -7.39 16 4 N -0.37 -8.67 3.54 -51.23 -0.18 -8.85 16 5 C 0.33 6.12 3.18 -125.16 -0.40 5.72 16 6 H 0.07 1.25 6.69 -51.93 -0.35 0.90 16 7 C -0.13 -2.15 6.74 -24.60 -0.17 -2.32 16 8 C -0.14 -1.71 6.94 -24.91 -0.17 -1.88 16 9 C 0.05 0.67 6.90 -2.83 -0.02 0.65 16 10 N -0.53 -8.98 5.23 -235.33 -1.23 -10.21 16 11 C 0.03 0.39 9.12 60.06 0.55 0.94 16 12 C -0.09 -2.12 7.06 -81.03 -0.57 -2.69 16 13 C -0.05 -0.98 9.69 36.01 0.35 -0.63 16 14 C 0.01 0.18 5.52 -106.83 -0.59 -0.41 16 15 C -0.46 -12.58 8.87 -37.76 -0.34 -12.92 16 16 H 0.07 1.80 7.92 -52.48 -0.42 1.38 16 17 C 0.08 2.08 4.23 -17.36 -0.07 2.00 16 18 N -0.82 -22.13 10.25 55.53 0.57 -21.56 16 19 Si 0.89 19.79 29.60 -169.99 -5.03 14.76 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H 0.08 1.95 6.88 -51.93 -0.36 1.59 16 24 H 0.06 1.43 7.28 -51.93 -0.38 1.05 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.59 7.58 -51.93 -0.39 0.20 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.47 7.98 -51.93 -0.41 1.06 16 37 H 0.04 0.64 7.38 -51.93 -0.38 0.25 16 38 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -30.68 307.44 -8.56 -39.24 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.05 Total: 0.56 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.69 Total: -11.18 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.42 Total: -48.01 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.68 -8.56 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.902 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds