Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89375 * 2 1 4 4 N 1.40087 * 108.20037 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.03477 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47247 * 305.02784 * 5 4 3 7 7 H 1.07992 * 120.00258 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99926 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99763 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47546 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47332 * 120.00321 * 10 8 6 13 13 H 1.48507 * 109.46680 * 239.99844 * 10 8 6 14 14 C 1.34939 * 107.93005 * 0.02562 * 4 3 2 15 15 C 1.35315 * 107.74580 * 359.97438 * 14 4 3 16 16 C 1.50695 * 126.04388 * 179.73639 * 15 14 4 17 17 N 1.46900 * 109.47397 * 260.02921 * 16 15 14 18 18 C 1.46901 * 111.00377 * 179.97438 * 17 16 15 19 19 C 1.53001 * 115.54577 * 34.41599 * 18 17 16 20 20 C 1.53000 * 117.50066 * 248.74913 * 18 17 16 21 21 C 1.52995 * 117.50186 * 180.08825 * 18 17 16 22 22 H 1.08997 * 109.47372 * 269.99752 * 1 2 3 23 23 H 1.09003 * 109.47264 * 30.00203 * 1 2 3 24 24 H 1.08999 * 109.46975 * 150.00349 * 1 2 3 25 25 H 1.09005 * 109.46882 * 65.02573 * 5 4 3 26 26 H 1.09003 * 109.47200 * 185.02502 * 5 4 3 27 27 H 0.97005 * 119.99720 * 180.02562 * 9 8 6 28 28 H 1.07999 * 126.13245 * 180.02562 * 14 4 3 29 29 H 1.09003 * 109.47224 * 20.02957 * 16 15 14 30 30 H 1.09003 * 109.47483 * 140.02522 * 16 15 14 31 31 H 1.00901 * 111.00072 * 56.04715 * 17 16 15 32 32 H 1.09004 * 109.47258 * 85.58549 * 19 18 17 33 33 H 1.09004 * 109.46956 * 205.58125 * 19 18 17 34 34 H 1.08996 * 109.47624 * 325.58293 * 19 18 17 35 35 H 1.08995 * 117.49903 * 359.97438 * 20 18 17 36 36 H 1.08999 * 117.49843 * 145.01562 * 20 18 17 37 37 H 1.09001 * 117.49817 * 214.97798 * 21 18 17 38 38 H 1.08998 * 117.50223 * 359.97409 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 4.7127 2.4548 -1.1639 7 1 3.8681 2.4193 -1.8360 8 6 5.7199 3.3736 -1.3702 9 7 6.7481 3.4171 -0.5514 10 14 5.6238 4.5564 -2.8128 11 1 4.3763 4.3041 -3.5777 12 1 5.6219 5.9531 -2.3084 13 1 6.7975 4.3519 -3.6994 14 6 3.6143 -0.7152 0.0004 15 6 2.3272 -1.1330 0.0002 16 6 1.8600 -2.5656 -0.0056 17 7 1.4783 -2.9507 -1.3709 18 6 1.0171 -4.3447 -1.4153 19 6 0.2592 -4.8287 -0.1775 20 6 1.9019 -5.3587 -2.1432 21 6 0.5831 -4.9024 -2.7723 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 4.8258 2.0663 0.9315 26 1 5.6885 0.8905 -0.0891 27 1 7.4565 4.0638 -0.6964 28 1 4.4892 -1.3484 0.0011 29 1 2.6658 -3.2120 0.3423 30 1 0.9995 -2.6700 0.6553 31 1 2.2405 -2.8017 -2.0151 32 1 -0.7948 -4.5669 -0.2714 33 1 0.3584 -5.9107 -0.0907 34 1 0.6738 -4.3534 0.7114 35 1 2.8260 -4.9915 -2.5895 36 1 1.9437 -6.3707 -1.7405 37 1 -0.2421 -5.6144 -2.7832 38 1 0.6394 -4.2349 -3.6321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390476646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = 73.493813 kcal Electronic energy + Delta-G solvation = -17773.478177 eV Core-core repulsion = 15038.247850 eV Total energy + Delta-G solvation = -2735.230327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99837 -39.39640 -35.98804 -34.75723 -33.69160 -31.11922 -30.20396 -29.27864 -27.94282 -25.77699 -23.99270 -23.21804 -21.49253 -20.33205 -20.20843 -18.63955 -17.65515 -16.89092 -16.43535 -16.14704 -15.84936 -15.09191 -14.81700 -14.50685 -14.22099 -14.10030 -13.89428 -13.65454 -13.34411 -13.23779 -12.98153 -12.89099 -12.83708 -12.69424 -12.35385 -12.31507 -12.18831 -11.67811 -11.43237 -11.18528 -10.93888 -10.75961 -10.00529 -9.20470 -8.93055 -8.36841 -6.51008 1.20666 1.34223 1.36266 1.49517 1.91249 1.96952 2.32941 2.93410 2.94784 3.37297 3.90531 3.92976 4.00175 4.04604 4.12941 4.36825 4.47934 4.62178 4.72239 4.78536 4.82078 4.89612 4.91103 4.92727 4.97982 5.04553 5.08705 5.16139 5.27166 5.30942 5.33885 5.37107 5.55511 5.79979 6.02921 6.23956 6.34668 6.46474 6.63208 7.12962 7.19555 8.71317 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.004508 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.166961 B = 6209.175093 C = 6453.690307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.062 3.938 3 N -0.341 5.341 4 N -0.355 5.355 5 C 0.272 3.728 6 C -0.547 4.547 7 H 0.049 0.951 8 C 0.018 3.982 9 N -0.921 5.921 10 Si 0.972 3.028 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.267 1.267 14 C 0.044 3.956 15 C -0.253 4.253 16 C 0.157 3.843 17 N -0.656 5.656 18 C 0.046 3.954 19 C -0.119 4.119 20 C -0.215 4.215 21 C -0.170 4.170 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.016 0.984 26 H 0.052 0.948 27 H 0.273 0.727 28 H 0.185 0.815 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.338 0.662 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -17.572 -0.163 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 N -0.165 5.165 4 N -0.135 5.135 5 C 0.153 3.847 6 C -0.585 4.585 7 H 0.067 0.933 8 C -0.182 4.182 9 N -0.560 5.560 10 Si 0.796 3.204 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.192 1.192 14 C -0.105 4.105 15 C -0.265 4.265 16 C 0.028 3.972 17 N -0.285 5.285 18 C -0.047 4.047 19 C -0.176 4.176 20 C -0.255 4.255 21 C -0.208 4.208 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.202 0.798 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.023 -15.806 -0.045 19.270 hybrid contribution 1.472 -0.275 -0.654 1.634 sum -9.551 -16.081 -0.700 18.717 Atomic orbital electron populations 1.20154 0.84977 1.03437 1.03217 1.22806 0.98131 0.90196 0.99277 1.77289 0.87883 1.25074 1.26292 1.49033 1.05600 1.05317 1.53530 1.19226 0.79255 0.89110 0.97138 1.21407 1.06837 1.18478 1.11745 0.93259 1.25757 0.94282 0.98568 0.99589 1.70005 1.10346 1.37163 1.38492 0.85288 0.78232 0.78324 0.78507 1.20035 1.19718 1.19245 1.22874 1.00292 0.85177 1.02160 1.19964 0.90696 0.96692 1.19161 1.20024 0.99042 0.87995 0.90097 1.60299 1.41539 1.18766 1.07920 1.21778 1.01557 0.86431 0.94885 1.21508 1.00051 1.01364 0.94702 1.23742 0.94793 1.00943 1.05984 1.23161 0.98370 1.03046 0.96226 0.89681 0.92210 0.88646 0.96585 0.93033 0.91793 0.79757 0.94041 0.88962 0.84320 0.91259 0.90707 0.91202 0.89729 0.87698 0.87262 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.26 71.24 0.73 -0.96 16 2 C 0.06 2.35 7.22 43.10 0.31 2.66 16 3 N -0.34 -16.39 12.41 -47.38 -0.59 -16.98 16 4 N -0.36 -17.00 3.67 -351.79 -1.29 -18.29 16 5 C 0.27 14.60 6.26 85.63 0.54 15.13 16 6 C -0.55 -31.86 9.24 25.60 0.24 -31.62 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.02 1.03 5.46 84.66 0.46 1.50 16 9 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 10 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 C 0.04 1.68 11.36 83.54 0.95 2.63 16 15 C -0.25 -8.53 5.61 -20.15 -0.11 -8.64 16 16 C 0.16 3.85 4.81 85.56 0.41 4.26 16 17 N -0.66 -15.58 6.76 -474.15 -3.21 -18.79 16 18 C 0.05 0.85 2.91 3.53 0.01 0.86 16 19 C -0.12 -1.78 9.48 71.98 0.68 -1.09 16 20 C -0.22 -3.66 9.88 30.62 0.30 -3.36 16 21 C -0.17 -2.96 10.18 30.62 0.31 -2.65 16 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.09 2.37 7.96 -2.39 -0.02 2.36 16 25 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.05 2.71 8.07 -2.39 -0.02 2.69 16 27 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 28 H 0.19 5.77 8.06 -2.91 -0.02 5.74 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 2.02 6.35 -2.39 -0.02 2.01 16 31 H 0.34 8.68 8.51 -89.69 -0.76 7.92 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.89 7.90 -2.38 -0.02 0.87 16 34 H 0.07 1.05 5.61 -2.39 -0.01 1.04 16 35 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.10 1.49 8.05 -2.39 -0.02 1.47 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.02 321.35 2.34 -63.68 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.28 Total: 17.96 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.83 Total: -21.29 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.80 Total: -107.02 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.02 2.34 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390476646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.179 kcal (2) G-P(sol) polarization free energy of solvation -66.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds