Wall clock time and date at job start Mon Mar 30 2020 03:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30842 * 125.89733 * 2 1 4 4 N 1.40080 * 108.20442 * 180.02562 * 3 2 1 5 5 C 1.46493 * 126.03959 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47128 * 305.02381 * 5 4 3 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 C 1.34953 * 107.92384 * 0.26217 * 4 3 2 15 15 C 1.35317 * 107.74808 * 359.58275 * 14 4 3 16 16 C 1.50691 * 126.04118 * 180.16020 * 15 14 4 17 17 N 1.46898 * 109.47333 * 260.30605 * 16 15 14 18 18 C 1.46898 * 111.00286 * 180.02562 * 17 16 15 19 19 H 1.09000 * 115.54892 * 9.41065 * 18 17 16 20 20 C 1.53003 * 117.49824 * 223.74348 * 18 17 16 21 21 C 1.53003 * 117.49986 * 155.08781 * 18 17 16 22 22 H 1.08997 * 117.49751 * 215.00179 * 21 18 17 23 23 C 1.53000 * 117.49822 * 359.97438 * 21 18 17 24 24 H 1.09000 * 109.47551 * 89.97226 * 1 2 3 25 25 H 1.09000 * 109.47123 * 209.97668 * 1 2 3 26 26 H 1.09004 * 109.47221 * 329.97212 * 1 2 3 27 27 H 1.09001 * 109.47786 * 185.02653 * 5 4 3 28 28 H 1.09006 * 109.47401 * 65.02239 * 5 4 3 29 29 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 30 30 H 1.07997 * 126.12530 * 179.73359 * 14 4 3 31 31 H 1.08999 * 109.47400 * 20.30517 * 16 15 14 32 32 H 1.09004 * 109.47564 * 140.30555 * 16 15 14 33 33 H 1.00911 * 110.99536 * 303.95222 * 17 16 15 34 34 H 1.09007 * 117.49550 * 359.97438 * 20 18 17 35 35 H 1.08994 * 117.50084 * 145.01680 * 20 18 17 36 36 H 1.09002 * 109.47106 * 60.01002 * 23 21 18 37 37 H 1.08997 * 109.47243 * 180.02562 * 23 21 18 38 38 H 1.09001 * 109.47351 * 300.00708 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5008 -0.0003 6 6 4.7122 2.4562 -1.1632 7 1 3.8677 2.4211 -1.8355 8 6 5.7193 3.3752 -1.3688 9 7 6.7479 3.4177 -0.5504 10 14 5.6233 4.5589 -2.8106 11 1 6.8199 5.4383 -2.8096 12 1 5.5746 3.7899 -4.0801 13 1 4.3988 5.3901 -2.6881 14 6 3.6142 -0.7153 -0.0068 15 6 2.3271 -1.1330 -0.0007 16 6 1.8599 -2.5657 -0.0009 17 7 1.4790 -2.9563 -1.3648 18 6 1.0167 -4.3501 -1.4036 19 1 0.8704 -4.8241 -0.4330 20 6 1.5189 -5.2294 -2.5506 21 6 0.0660 -4.7480 -2.5345 22 1 -0.7057 -5.4836 -2.3079 23 6 -0.3308 -3.6635 -3.5382 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5143 27 1 5.6884 0.8905 -0.0909 28 1 4.8263 2.0650 0.9317 29 1 6.7979 2.8027 0.1981 30 1 4.4890 -1.3485 -0.0129 31 1 2.6654 -3.2106 0.3501 32 1 0.9990 -2.6673 0.6599 33 1 0.7784 -2.3328 -1.7372 34 1 2.1921 -4.7734 -3.2767 35 1 1.7028 -6.2818 -2.3347 36 1 0.5623 -3.2824 -4.0335 37 1 -1.0065 -4.0862 -4.2817 38 1 -0.8312 -2.8491 -3.0143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393790598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:25 Heat of formation + Delta-G solvation = 64.222929 kcal Electronic energy + Delta-G solvation = -17719.841007 eV Core-core repulsion = 14984.208664 eV Total energy + Delta-G solvation = -2735.632343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10376 -39.15801 -36.36372 -35.06105 -33.75217 -31.17296 -30.25097 -29.18093 -27.74246 -25.71345 -24.24401 -22.35694 -21.73845 -20.82210 -20.44259 -19.11709 -17.51951 -16.90514 -16.46862 -16.14552 -15.70005 -15.34466 -15.07637 -14.62226 -14.40632 -14.19707 -13.72861 -13.70314 -13.47125 -13.33992 -13.15528 -13.02941 -12.79118 -12.66603 -12.55686 -12.23485 -11.97111 -11.37846 -11.29859 -11.12226 -10.73055 -10.72603 -10.08521 -9.34606 -9.02857 -8.81343 -6.59836 1.11485 1.48332 1.55156 1.75644 1.81033 1.85072 2.45929 2.93601 2.97414 3.32295 3.75827 3.92793 3.94305 4.11171 4.23308 4.29943 4.44288 4.47988 4.50697 4.52320 4.60991 4.72587 4.76696 4.89011 4.94275 4.99544 5.03006 5.09524 5.19049 5.25267 5.27121 5.49836 5.56291 5.84121 5.95659 6.23772 6.26985 6.40629 6.48727 6.99702 7.16821 8.54090 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.004564 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.455962 B = 6133.922709 C = 6363.262933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 N -0.337 5.337 4 N -0.355 5.355 5 C 0.259 3.741 6 C -0.621 4.621 7 H 0.043 0.957 8 C -0.019 4.019 9 N -0.922 5.922 10 Si 1.121 2.879 11 H -0.273 1.273 12 H -0.271 1.271 13 H -0.275 1.275 14 C 0.051 3.949 15 C -0.248 4.248 16 C 0.159 3.841 17 N -0.668 5.668 18 C 0.012 3.988 19 H 0.111 0.889 20 C -0.175 4.175 21 C -0.159 4.159 22 H 0.119 0.881 23 C -0.124 4.124 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.183 0.817 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.342 0.658 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -16.899 -1.476 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 N -0.161 5.161 4 N -0.135 5.135 5 C 0.139 3.861 6 C -0.659 4.659 7 H 0.061 0.939 8 C -0.219 4.219 9 N -0.559 5.559 10 Si 0.941 3.059 11 H -0.197 1.197 12 H -0.196 1.196 13 H -0.200 1.200 14 C -0.097 4.097 15 C -0.260 4.260 16 C 0.030 3.970 17 N -0.300 5.300 18 C -0.098 4.098 19 H 0.129 0.871 20 C -0.213 4.213 21 C -0.178 4.178 22 H 0.137 0.863 23 C -0.181 4.181 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.200 0.800 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.203 -14.425 -2.374 19.043 hybrid contribution -0.994 -1.745 1.370 2.431 sum -13.197 -16.170 -1.004 20.896 Atomic orbital electron populations 1.20219 0.84534 1.03866 1.03530 1.22918 0.98311 0.90265 1.00007 1.77275 0.87703 1.25057 1.26043 1.48785 1.05427 1.05196 1.54052 1.19312 0.80112 0.89493 0.97184 1.22271 1.09719 1.20854 1.13053 0.93881 1.27331 0.91286 0.99390 1.03849 1.70951 1.30840 1.38396 1.15665 0.82881 0.76784 0.74232 0.72015 1.19727 1.19598 1.20050 1.22838 1.00567 0.84763 1.01567 1.19947 0.90936 0.96500 1.18663 1.19981 0.99463 0.88779 0.88803 1.60215 1.45528 1.02132 1.22089 1.22538 1.02869 0.89983 0.94422 0.87127 1.23289 0.96443 0.99679 1.01872 1.22713 0.93579 1.01748 0.99748 0.86280 1.21274 1.01204 0.97494 0.98127 0.89798 0.88420 0.91345 0.93650 0.97018 0.93099 0.79963 0.90223 0.92948 0.83745 0.90129 0.87628 0.93617 0.91015 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.26 71.24 0.73 -0.88 16 2 C 0.05 1.88 7.22 43.10 0.31 2.19 16 3 N -0.34 -16.07 12.41 -47.38 -0.59 -16.65 16 4 N -0.36 -17.17 3.67 -351.79 -1.29 -18.46 16 5 C 0.26 13.92 5.58 85.64 0.48 14.40 16 6 C -0.62 -36.70 9.24 25.60 0.24 -36.46 16 7 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 8 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 9 N -0.92 -55.37 13.65 21.45 0.29 -55.08 16 10 Si 1.12 51.01 29.90 68.60 2.05 53.06 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 C 0.05 2.01 11.36 83.54 0.95 2.96 16 15 C -0.25 -8.38 5.61 -20.15 -0.11 -8.50 16 16 C 0.16 3.88 5.74 85.55 0.49 4.37 16 17 N -0.67 -15.83 6.55 -495.59 -3.25 -19.07 16 18 C 0.01 0.23 6.24 44.92 0.28 0.51 16 19 H 0.11 1.74 7.90 -2.39 -0.02 1.72 16 20 C -0.17 -3.15 10.11 30.62 0.31 -2.84 16 21 C -0.16 -2.52 6.41 -10.77 -0.07 -2.59 16 22 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 23 C -0.12 -2.06 9.12 71.98 0.66 -1.41 16 24 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.10 1.87 7.50 -2.39 -0.02 1.85 16 26 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.05 2.37 7.94 -2.39 -0.02 2.35 16 28 H 0.01 0.68 8.01 -2.38 -0.02 0.66 16 29 H 0.26 15.46 7.22 -92.71 -0.67 14.79 16 30 H 0.18 6.07 8.06 -2.91 -0.02 6.05 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 33 H 0.34 8.15 7.19 -89.69 -0.64 7.50 16 34 H 0.08 1.76 8.05 -2.38 -0.02 1.74 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 0.93 7.90 -2.39 -0.02 0.91 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.96 7.59 -2.39 -0.02 0.95 16 Total: -1.00 -69.36 321.45 2.44 -66.93 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.49 Total: 18.16 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.72 Total: -28.88 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.83 Total: -109.27 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -69.36 2.44 -66.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393790598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.151 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds