Wall clock time and date at job start Mon Mar 30 2020 04:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.64799 * 2 1 4 4 C 1.34130 * 109.25489 * 180.02562 * 3 2 1 5 5 C 1.34664 * 108.02098 * 359.73593 * 4 3 2 6 6 N 1.35039 * 125.65033 * 180.02562 * 2 1 3 7 7 C 1.46490 * 126.39894 * 359.96156 * 6 2 1 8 8 C 1.53003 * 109.47234 * 85.00060 * 7 6 2 9 9 N 1.46900 * 109.47259 * 174.71663 * 8 7 6 10 10 C 1.48557 * 111.00207 * 174.69462 * 9 8 7 11 11 C 1.54380 * 104.59580 * 200.95954 * 10 9 8 12 12 C 1.54258 * 105.06257 * 23.85046 * 11 10 9 13 13 H 1.08997 * 110.32714 * 241.00606 * 12 11 10 14 14 C 1.50694 * 110.32423 * 118.89359 * 12 11 10 15 15 H 1.08009 * 120.00300 * 241.45884 * 14 12 11 16 16 C 1.37877 * 120.00121 * 61.45454 * 14 12 11 17 17 N 1.31522 * 119.99751 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00429 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47077 * 270.00299 * 18 16 14 20 20 H 1.48502 * 109.47307 * 150.00513 * 18 16 14 21 21 H 1.48498 * 109.47284 * 30.00169 * 18 16 14 22 22 C 1.48560 * 111.00206 * 59.27410 * 9 8 7 23 23 H 1.09006 * 109.46668 * 269.95857 * 1 2 3 24 24 H 1.09001 * 109.47127 * 29.95476 * 1 2 3 25 25 H 1.08993 * 109.47018 * 149.95784 * 1 2 3 26 26 H 1.08004 * 125.98673 * 180.02562 * 4 3 2 27 27 H 1.08000 * 126.59145 * 180.28224 * 5 4 3 28 28 H 1.08999 * 109.47111 * 324.99992 * 7 6 2 29 29 H 1.08998 * 109.47496 * 204.99878 * 7 6 2 30 30 H 1.08995 * 109.47141 * 54.71815 * 8 7 6 31 31 H 1.08998 * 109.47345 * 294.71388 * 8 7 6 32 32 H 1.09001 * 110.41283 * 82.17756 * 10 9 8 33 33 H 1.09007 * 110.41146 * 319.73824 * 10 9 8 34 34 H 1.09002 * 110.32253 * 264.95178 * 11 10 9 35 35 H 1.09001 * 110.40938 * 142.79315 * 11 10 9 36 36 H 0.96993 * 119.99691 * 359.97438 * 17 16 14 37 37 H 1.08998 * 110.40866 * 40.26399 * 22 9 8 38 38 H 1.09005 * 110.41037 * 277.82279 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6642 0.0050 6 7 2.2941 -1.0973 -0.0005 7 6 1.8426 -2.4909 -0.0003 8 6 1.5650 -2.9373 -1.4372 9 7 1.2347 -4.3686 -1.4502 10 6 0.8349 -4.8105 -2.8110 11 6 0.0289 -6.1064 -2.5782 12 6 -0.4933 -5.9990 -1.1307 13 1 -0.1053 -6.8189 -0.5264 14 6 -2.0002 -6.0066 -1.1159 15 1 -2.5408 -5.1561 -0.7275 16 6 -2.6888 -7.0994 -1.5983 17 7 -2.0305 -8.1353 -2.0709 18 14 -4.5567 -7.1092 -1.5795 19 1 -5.0357 -7.6855 -0.2975 20 1 -5.0589 -7.9310 -2.7098 21 1 -5.0605 -5.7190 -1.7160 22 6 0.0411 -4.6472 -0.6107 23 1 -0.3633 -0.0007 1.0278 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3633 -0.8896 -0.5145 26 1 4.4098 1.3412 -0.0003 27 1 4.4777 -1.2831 0.0103 28 1 0.9301 -2.5771 0.5896 29 1 2.6168 -3.1237 0.4335 30 1 2.4500 -2.7632 -2.0491 31 1 0.7273 -2.3675 -1.8393 32 1 1.7165 -5.0150 -3.4186 33 1 0.2105 -4.0549 -3.2879 34 1 0.6747 -6.9781 -2.6840 35 1 -0.8047 -6.1665 -3.2779 36 1 -1.0607 -8.1303 -2.0804 37 1 -0.7075 -3.8661 -0.7432 38 1 0.3250 -4.7288 0.4386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397605279.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:45 Heat of formation + Delta-G solvation = 36.847953 kcal Electronic energy + Delta-G solvation = -18206.594606 eV Core-core repulsion = 15469.775195 eV Total energy + Delta-G solvation = -2736.819411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.07624 -40.04571 -36.36777 -34.87176 -32.67404 -32.24296 -30.17294 -28.68638 -27.68025 -26.33230 -24.24376 -22.31928 -21.90864 -21.59478 -20.50405 -19.00404 -18.00087 -16.96866 -16.75485 -15.98768 -15.95898 -15.60609 -15.26919 -14.97960 -14.53428 -14.43571 -13.92089 -13.77967 -13.57732 -13.42136 -13.23828 -13.03070 -12.73848 -12.58497 -12.23072 -12.14390 -11.93800 -11.82443 -11.41522 -10.99550 -10.63565 -10.56344 -10.44788 -9.58463 -9.30711 -8.57736 -6.31598 1.05828 1.54351 1.61737 1.74207 1.78708 2.14536 2.57497 3.04751 3.21643 3.56965 3.62630 3.69170 3.86200 3.93529 4.20383 4.22760 4.26373 4.38279 4.41742 4.47836 4.62749 4.63979 4.66307 4.70487 4.84161 4.86641 4.98966 5.02397 5.09902 5.34967 5.37163 5.60295 5.62728 5.83066 5.96936 6.14015 6.21371 6.24412 6.67406 7.11889 7.49159 8.81714 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.004707 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.001581 B = 5947.675415 C = 6472.122874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.189 3.811 3 N -0.530 5.530 4 C -0.053 4.053 5 C -0.053 4.053 6 N -0.453 5.453 7 C 0.113 3.887 8 C 0.040 3.960 9 N -0.510 5.510 10 C 0.048 3.952 11 C -0.107 4.107 12 C 0.020 3.980 13 H -0.003 1.003 14 C -0.607 4.607 15 H 0.047 0.953 16 C -0.029 4.029 17 N -0.938 5.938 18 Si 1.112 2.888 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.056 3.944 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.188 0.812 27 H 0.203 0.797 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.037 0.963 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 12.758 2.980 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 N -0.251 5.251 4 C -0.200 4.200 5 C -0.186 4.186 6 N -0.136 5.136 7 C -0.009 4.009 8 C -0.089 4.089 9 N -0.234 5.234 10 C -0.080 4.080 11 C -0.146 4.146 12 C 0.001 3.999 13 H 0.015 0.985 14 C -0.645 4.645 15 H 0.065 0.935 16 C -0.228 4.228 17 N -0.575 5.575 18 Si 0.935 3.065 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.072 4.072 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.205 0.795 27 H 0.219 0.781 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.285 12.245 2.786 14.518 hybrid contribution 1.061 0.198 -0.017 1.080 sum 8.347 12.443 2.768 15.237 Atomic orbital electron populations 1.20281 0.83855 1.04333 1.04370 1.23727 0.96677 0.81572 1.05302 1.70213 1.03540 1.29451 1.21851 1.22720 0.94736 0.93839 1.08699 1.23240 0.87642 0.96945 1.10746 1.45533 1.06870 1.07408 1.53818 1.21843 1.03102 0.78397 0.97589 1.22494 1.01244 0.88597 0.96590 1.65412 1.34414 1.15296 1.08271 1.22999 0.98434 0.96059 0.90482 1.22310 0.97137 0.95955 0.99222 1.19547 0.94925 0.93163 0.92289 0.98522 1.22380 0.92122 1.04907 1.45073 0.93462 1.27096 1.10671 0.92146 0.92839 1.70859 1.10099 1.31831 1.44701 0.82980 0.69967 0.76396 0.77181 1.20139 1.21245 1.19667 1.23023 0.89839 0.97004 0.97315 0.89046 0.88804 0.90680 0.79510 0.78064 0.88684 0.86786 0.89674 0.94728 0.89243 0.94242 0.94241 0.94164 0.92618 0.94449 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.04 71.24 0.71 -0.74 16 2 C 0.19 4.90 7.90 138.13 1.09 5.99 16 3 N -0.53 -15.27 11.25 -188.13 -2.12 -17.38 16 4 C -0.05 -1.25 11.87 83.52 0.99 -0.26 16 5 C -0.05 -1.11 11.58 83.08 0.96 -0.15 16 6 N -0.45 -10.52 2.75 -514.31 -1.41 -11.94 16 7 C 0.11 2.48 5.38 86.38 0.46 2.94 16 8 C 0.04 1.02 5.26 86.30 0.45 1.47 16 9 N -0.51 -16.36 5.45 -881.48 -4.81 -21.17 16 10 C 0.05 1.68 6.49 86.45 0.56 2.24 16 11 C -0.11 -4.79 5.03 31.49 0.16 -4.63 16 12 C 0.02 0.95 2.65 -10.65 -0.03 0.92 16 13 H 0.00 -0.18 8.04 -2.39 -0.02 -0.20 16 14 C -0.61 -32.45 8.37 25.60 0.21 -32.23 16 15 H 0.05 2.48 7.58 -2.91 -0.02 2.46 16 16 C -0.03 -1.58 5.09 84.65 0.43 -1.15 16 17 N -0.94 -55.42 13.27 21.45 0.28 -55.13 16 18 Si 1.11 48.69 29.90 68.60 2.05 50.74 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 C 0.06 2.08 4.86 86.45 0.42 2.50 16 23 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.53 7.32 -2.39 -0.02 1.51 16 26 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.09 2.09 6.99 -2.39 -0.02 2.07 16 29 H 0.11 2.25 8.13 -2.39 -0.02 2.23 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 0.94 7.46 -2.39 -0.02 0.92 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.04 1.36 7.89 -2.38 -0.02 1.34 16 34 H 0.04 1.76 7.92 -2.39 -0.02 1.74 16 35 H 0.04 2.01 7.23 -2.39 -0.02 1.99 16 36 H 0.26 15.59 6.00 -92.71 -0.56 15.03 16 37 H 0.04 1.41 7.54 -2.39 -0.02 1.39 16 38 H 0.08 2.65 7.79 -2.38 -0.02 2.63 16 Total: -1.00 -65.18 307.05 1.67 -63.51 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.24 Total: 14.46 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 6.44 Total: -23.09 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -8.05 Total: -105.62 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Total: -65.18 1.67 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397605279.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.356 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds