Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34544 * 125.69718 * 2 1 4 4 C 1.42053 * 107.33624 * 179.76115 * 3 2 1 5 5 C 1.47593 * 126.50071 * 180.21791 * 4 3 2 6 6 N 1.29694 * 119.99926 * 180.02562 * 5 4 3 7 7 N 1.40100 * 119.99749 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99878 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46975 * 330.00161 * 8 7 6 10 10 C 1.52997 * 109.47081 * 90.00101 * 8 7 6 11 11 C 1.50702 * 109.47160 * 210.00160 * 8 7 6 12 12 H 1.08001 * 119.99901 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99957 * 180.02562 * 11 8 7 14 14 N 1.31508 * 120.00081 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99792 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47339 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46784 * 120.00254 * 15 13 11 18 18 H 1.48500 * 109.47051 * 240.00001 * 15 13 11 19 19 C 1.36366 * 107.00102 * 0.24781 * 4 3 2 20 20 C 1.50699 * 125.99542 * 179.97438 * 19 4 3 21 21 N 1.36187 * 108.00693 * 359.97438 * 19 4 3 22 22 C 1.46496 * 125.47398 * 180.02562 * 21 19 4 23 23 H 1.08995 * 109.47313 * 90.02042 * 1 2 3 24 24 H 1.09006 * 109.46972 * 210.02167 * 1 2 3 25 25 H 1.08999 * 109.46685 * 330.01855 * 1 2 3 26 26 H 1.08002 * 126.33393 * 0.03434 * 3 2 1 27 27 H 1.08004 * 119.99805 * 0.03707 * 5 4 3 28 28 H 0.97005 * 119.99851 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.46998 * 299.99926 * 10 8 7 30 30 H 1.09005 * 109.46888 * 60.00065 * 10 8 7 31 31 H 1.08998 * 109.47079 * 179.97438 * 10 8 7 32 32 H 0.97007 * 120.00343 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.46859 * 89.97181 * 20 19 4 34 34 H 1.09003 * 109.46957 * 209.97443 * 20 19 4 35 35 H 1.08997 * 109.47030 * 329.97395 * 20 19 4 36 36 H 1.08993 * 109.47301 * 90.00626 * 22 21 19 37 37 H 1.09006 * 109.46585 * 210.00192 * 22 21 19 38 38 H 1.08998 * 109.47419 * 330.00028 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2920 1.0927 0.0000 4 6 3.6402 0.6452 0.0057 5 6 4.8472 1.4947 0.0122 6 7 6.0239 0.9494 0.0164 7 7 7.1696 1.7558 0.0232 8 6 8.4988 1.1399 0.0285 9 1 8.4518 0.1788 0.5406 10 6 8.9684 0.9278 -1.4120 11 6 9.4685 2.0440 0.7451 12 1 9.1287 2.9836 1.1550 13 6 10.7896 1.6721 0.8763 14 7 11.2037 0.5286 0.3757 15 14 11.9917 2.7931 1.7638 16 1 11.2812 4.0110 2.2297 17 1 12.5654 2.0779 2.9320 18 1 13.0841 3.1813 0.8358 19 6 3.6079 -0.7181 0.0032 20 6 4.8058 -1.6325 0.0068 21 7 2.3031 -1.1082 -0.0030 22 6 1.8304 -2.4948 -0.0069 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 1.9589 2.1200 0.0005 27 1 4.7504 2.5704 0.0136 28 1 7.0826 2.7219 0.0250 29 1 8.2670 0.2738 -1.9303 30 1 9.0153 1.8889 -1.9241 31 1 9.9576 0.4700 -1.4080 32 1 12.1333 0.2671 0.4677 33 1 5.0905 -1.8542 1.0354 34 1 4.5566 -2.5597 -0.5093 35 1 5.6366 -1.1448 -0.5030 36 1 1.7085 -2.8400 1.0197 37 1 0.8730 -2.5508 -0.5251 38 1 2.5577 -3.1253 -0.5183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754964452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = 79.814162 kcal Electronic energy + Delta-G solvation = -17622.946603 eV Core-core repulsion = 14887.990347 eV Total energy + Delta-G solvation = -2734.956256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04456 -36.24178 -34.15498 -32.73419 -32.38383 -30.76898 -28.94831 -27.66430 -25.97762 -25.15060 -23.97923 -21.52860 -20.11974 -19.71005 -18.15441 -16.47586 -16.15812 -15.49650 -15.28941 -14.89038 -14.11560 -13.59622 -13.27151 -13.11577 -12.96593 -12.67818 -12.45042 -12.25129 -12.21814 -12.02660 -11.85568 -11.55886 -11.31634 -11.25072 -10.99059 -10.75395 -10.45456 -10.17292 -10.12622 -9.18493 -8.90671 -8.53183 -8.35636 -7.67596 -6.43826 -6.07287 -4.14938 2.26565 2.66968 3.05959 3.26949 3.34515 3.38451 4.02938 4.06505 4.44336 4.72846 4.91253 5.06880 5.16121 5.24688 5.27879 5.38712 5.48434 5.55125 5.69673 5.78345 5.97602 6.09568 6.21229 6.35301 6.54562 6.77994 6.86804 7.08639 7.14256 7.25388 7.34222 7.49447 7.61881 7.67746 7.89532 7.97163 8.27454 8.45606 8.95819 9.51595 9.59555 10.98192 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.044366 B = 0.003997 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.965195 B = 7002.787046 C = 7303.958571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.002 4.002 3 C -0.179 4.179 4 C -0.100 4.100 5 C 0.038 3.962 6 N -0.215 5.215 7 N -0.637 5.637 8 C 0.300 3.700 9 H 0.039 0.961 10 C -0.150 4.150 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.901 3.099 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.043 3.957 20 C -0.083 4.083 21 N -0.450 5.450 22 C 0.074 3.926 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.365 0.635 29 H 0.011 0.989 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 -4.192 -1.416 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.108 4.108 5 C -0.172 4.172 6 N -0.026 5.026 7 N -0.374 5.374 8 C 0.197 3.803 9 H 0.057 0.943 10 C -0.209 4.209 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.071 4.071 20 C -0.141 4.141 21 N -0.128 5.128 22 C -0.069 4.069 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.200 0.800 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.851 -5.600 -1.433 18.763 hybrid contribution 0.354 1.814 0.454 1.903 sum -17.497 -3.786 -0.979 17.929 Atomic orbital electron populations 1.20223 0.88666 1.02652 1.01981 1.20055 0.93016 0.85790 1.12293 1.20585 0.91610 0.97295 1.11022 1.17613 0.91427 0.90669 1.11053 1.22832 0.89415 0.95703 1.09249 1.73866 0.95020 1.27051 1.06678 1.48899 1.01450 1.04592 1.82423 1.18422 0.74931 0.94290 0.92623 0.94304 1.22205 1.02204 0.98499 0.98004 1.21320 0.93582 1.05529 1.36133 0.92240 1.24857 0.97998 0.95347 0.95523 1.69904 1.16512 1.21121 1.45014 0.86402 0.80811 0.80603 0.79337 1.19796 1.20898 1.20909 1.20583 0.83964 0.94304 1.08263 1.20450 0.94550 0.96403 1.02662 1.43704 1.05537 1.05483 1.58072 1.21906 1.01090 0.81033 1.02823 0.91654 0.92349 0.90495 0.84812 0.88717 0.79956 0.96976 0.95680 0.89363 0.92748 0.91394 0.93220 0.87780 0.91334 0.90323 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.85 36.00 0.35 -0.31 16 2 C 0.00 -0.03 6.87 -81.84 -0.56 -0.59 16 3 C -0.18 -2.62 10.74 -39.43 -0.42 -3.04 16 4 C -0.10 -1.72 6.11 -105.29 -0.64 -2.36 16 5 C 0.04 0.72 11.02 -14.64 -0.16 0.56 16 6 N -0.22 -4.63 8.89 32.18 0.29 -4.34 16 7 N -0.64 -14.80 6.10 -5.88 -0.04 -14.84 16 8 C 0.30 7.86 3.23 -69.08 -0.22 7.64 16 9 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.15 -3.79 9.29 37.16 0.35 -3.44 16 11 C -0.53 -14.51 8.74 -34.44 -0.30 -14.81 16 12 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 15 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 C 0.04 0.69 6.94 -81.33 -0.56 0.13 16 20 C -0.08 -1.29 9.49 36.01 0.34 -0.95 16 21 N -0.45 -5.92 3.14 -114.98 -0.36 -6.28 16 22 C 0.07 0.64 10.51 59.84 0.63 1.27 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.10 1.65 8.02 -52.48 -0.42 1.23 16 28 H 0.36 7.98 8.58 -182.59 -1.57 6.42 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.63 7.04 -51.93 -0.37 0.26 16 35 H 0.10 1.90 6.23 -51.93 -0.32 1.58 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.52 7.61 -51.93 -0.40 0.12 16 38 H 0.08 0.66 7.01 -51.93 -0.36 0.29 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -30.63 317.79 -8.09 -38.72 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.08 Total: 4.50 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.30 Total: -14.21 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.52 Total: -49.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.63 -8.09 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754964452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.534 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds