Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47025 * 2 1 4 4 O 1.42899 * 109.47098 * 240.00229 * 2 1 3 5 5 C 1.50702 * 109.47092 * 120.00157 * 2 1 3 6 6 N 1.30100 * 124.98676 * 75.02686 * 5 2 1 7 7 C 1.35888 * 109.74041 * 179.72025 * 6 5 2 8 8 C 1.39735 * 133.47853 * 179.58324 * 7 6 5 9 9 C 1.37708 * 119.82638 * 180.43004 * 8 7 6 10 10 C 1.38704 * 120.53941 * 0.22965 * 9 8 7 11 11 C 1.38187 * 120.40966 * 359.97438 * 10 9 8 12 12 F 1.35093 * 120.11180 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.78088 * 0.02845 * 11 10 9 14 14 N 1.36508 * 124.98264 * 254.99845 * 5 2 1 15 15 C 1.37288 * 126.40713 * 359.97438 * 14 5 2 16 16 H 1.08001 * 119.99608 * 42.16682 * 15 14 5 17 17 C 1.38904 * 120.00121 * 222.16668 * 15 14 5 18 18 N 1.31383 * 119.99907 * 18.96312 * 17 15 14 19 19 Si 1.86802 * 119.99761 * 198.95864 * 17 15 14 20 20 H 1.48502 * 109.46788 * 60.00383 * 19 17 15 21 21 H 1.48499 * 109.46842 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47351 * 300.00378 * 19 17 15 23 23 H 1.08996 * 109.46990 * 299.99924 * 1 2 3 24 24 H 1.08997 * 109.46885 * 60.00042 * 1 2 3 25 25 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 26 26 H 0.96708 * 114.00013 * 299.99768 * 4 2 1 27 27 H 1.08000 * 120.08841 * 0.70001 * 8 7 6 28 28 H 1.07998 * 119.73106 * 180.24388 * 9 8 7 29 29 H 1.08004 * 119.79941 * 180.02562 * 10 9 8 30 30 H 0.97006 * 119.99908 * 182.62200 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 7 2.0214 -1.9998 1.4042 7 6 2.5511 -2.3039 2.6180 8 6 2.7683 -3.5047 3.2987 9 6 3.3323 -3.4876 4.5549 10 6 3.6831 -2.2867 5.1537 11 6 3.4716 -1.0895 4.4967 12 9 3.8161 0.0766 5.0854 13 6 2.9036 -1.0891 3.2291 14 7 2.5662 -0.0956 2.3261 15 6 2.7381 1.2554 2.4994 16 1 1.9610 1.9418 2.1969 17 6 3.9114 1.7395 3.0637 18 7 4.9874 0.9860 3.0899 19 14 3.9594 3.4619 3.7852 20 1 2.9638 3.5670 4.8820 21 1 5.3167 3.7362 4.3215 22 1 3.6356 4.4514 2.7263 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7210 -1.5952 -1.2329 27 1 2.4985 -4.4441 2.8392 28 1 3.5031 -4.4169 5.0780 29 1 4.1251 -2.2872 6.1391 30 1 5.7957 1.3095 3.5177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076079574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = -29.448174 kcal Electronic energy + Delta-G solvation = -18596.997591 eV Core-core repulsion = 15500.291303 eV Total energy + Delta-G solvation = -3096.706288 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.67132 -40.92479 -37.03378 -35.87440 -33.93813 -31.38784 -30.67363 -28.82368 -27.97368 -25.31460 -23.67210 -21.59939 -21.01964 -19.60615 -18.11065 -16.87840 -16.24914 -15.66669 -15.11062 -14.88605 -14.65393 -14.53210 -13.93721 -13.93171 -13.60116 -13.22549 -12.28261 -12.21164 -11.97459 -11.64590 -11.60701 -11.24265 -11.02867 -10.82406 -10.75458 -10.60241 -10.24146 -9.91189 -9.61415 -8.99017 -8.78732 -7.35913 -7.13635 -6.75173 -4.65864 1.83394 2.48090 2.97998 3.04249 3.05986 3.66420 3.83387 4.31358 4.63094 4.78239 4.83689 5.17960 5.37035 5.55769 5.59105 5.70683 5.82809 5.96365 6.12104 6.29256 6.36728 6.40326 6.63569 6.72749 6.90432 7.02211 7.20599 7.36158 7.61742 7.86216 8.01044 8.08174 8.55262 8.99854 9.19867 10.17887 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.013597 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.473970 B = 2058.827464 C = 3495.626813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.199 3.801 3 H 0.116 0.884 4 O -0.553 6.553 5 C 0.187 3.813 6 N -0.522 5.522 7 C 0.054 3.946 8 C -0.097 4.097 9 C -0.119 4.119 10 C -0.195 4.195 11 C 0.166 3.834 12 F -0.134 7.134 13 C 0.007 3.993 14 N -0.264 5.264 15 C -0.379 4.379 16 H 0.110 0.890 17 C 0.073 3.927 18 N -0.811 5.811 19 Si 0.930 3.070 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.266 1.266 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.379 0.621 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -1.780 0.525 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.138 3.862 3 H 0.134 0.866 4 O -0.357 6.357 5 C -0.075 4.075 6 N -0.246 5.246 7 C -0.071 4.071 8 C -0.117 4.117 9 C -0.140 4.140 10 C -0.217 4.217 11 C 0.145 3.855 12 F -0.113 7.113 13 C -0.110 4.110 14 N 0.067 4.933 15 C -0.507 4.507 16 H 0.127 0.873 17 C -0.143 4.143 18 N -0.438 5.438 19 Si 0.754 3.246 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.191 1.191 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.915 -1.505 -0.172 4.198 hybrid contribution 0.460 1.060 1.339 1.769 sum -3.455 -0.444 1.166 3.673 Atomic orbital electron populations 1.22415 0.95494 1.02924 1.02300 1.19984 0.92234 0.95224 0.78721 0.86643 1.86525 1.77845 1.29556 1.41797 1.24083 1.03724 0.88746 0.90948 1.70018 1.25785 1.11754 1.17045 1.18707 1.03473 0.92237 0.92731 1.19933 1.02339 0.95069 0.94338 1.20304 1.02020 0.96482 0.95224 1.20503 1.09023 0.90854 1.01282 1.16558 0.98214 0.81410 0.89337 1.91413 1.89634 1.46864 1.83375 1.18849 1.08547 0.90640 0.92924 1.41016 1.38090 1.05639 1.08604 1.19582 1.03670 0.79232 1.48176 0.87272 1.25549 0.93426 1.00824 0.94496 1.69911 1.01126 1.39031 1.33738 0.85954 0.78456 0.80384 0.79842 1.18852 1.20113 1.19112 0.91669 0.91619 0.91768 0.77312 0.86603 0.86258 0.86096 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.52 37.16 0.35 -2.35 16 2 C 0.20 3.89 3.94 -27.88 -0.11 3.78 16 3 H 0.12 2.30 7.45 -51.93 -0.39 1.92 16 4 O -0.55 -10.45 13.33 -35.23 -0.47 -10.92 16 5 C 0.19 4.44 6.72 -154.39 -1.04 3.40 16 6 N -0.52 -12.51 11.11 -8.11 -0.09 -12.60 16 7 C 0.05 1.32 7.22 -84.67 -0.61 0.71 16 8 C -0.10 -1.98 10.10 -39.22 -0.40 -2.38 16 9 C -0.12 -2.22 10.01 -39.60 -0.40 -2.62 16 10 C -0.19 -4.00 10.01 -39.43 -0.39 -4.39 16 11 C 0.17 4.08 6.74 -39.35 -0.27 3.82 16 12 F -0.13 -3.41 13.76 2.25 0.03 -3.38 16 13 C 0.01 0.18 6.13 -83.79 -0.51 -0.34 16 14 N -0.26 -6.89 2.79 -56.61 -0.16 -7.05 16 15 C -0.38 -9.74 8.99 -14.86 -0.13 -9.87 16 16 H 0.11 2.58 7.89 -52.49 -0.41 2.16 16 17 C 0.07 1.85 3.58 -17.50 -0.06 1.79 16 18 N -0.81 -21.85 11.03 55.49 0.61 -21.24 16 19 Si 0.93 19.39 29.59 -169.99 -5.03 14.36 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.38 6.16 8.90 45.56 0.41 6.56 16 27 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 28 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.12 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 267.02 15.07 4.02 4.02 Total: -1.00 -30.07 267.02 -6.71 -36.78 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -2.07 Total: 8.48 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.57 Total: -8.46 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.36 Total: -40.89 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.47 Total: -10.92 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.03 Total: -3.38 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.07 -6.71 -36.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076079574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.336 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds