Wall clock time and date at job start Mon Mar 30 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39444 * 126.07210 * 2 1 4 4 N 1.30916 * 108.61602 * 180.02562 * 3 2 1 5 5 N 1.40073 * 108.51732 * 359.97438 * 4 3 2 6 6 C 1.46502 * 126.14892 * 180.02562 * 5 4 3 7 7 C 1.36361 * 107.70800 * 359.73672 * 5 4 3 8 8 C 1.47867 * 126.35035 * 180.26226 * 7 5 4 9 9 N 1.30879 * 125.89089 * 227.48472 * 8 7 5 10 10 O 1.41668 * 107.79734 * 179.91455 * 9 8 7 11 11 N 1.41647 * 107.66550 * 0.36095 * 10 9 8 12 12 C 1.30351 * 107.98190 * 359.78380 * 11 10 9 13 13 O 1.35548 * 125.83332 * 179.97438 * 12 11 10 14 14 C 1.34840 * 116.99728 * 5.30305 * 13 12 11 15 15 H 1.07997 * 120.00070 * 5.21912 * 14 13 12 16 16 C 1.38689 * 119.99606 * 185.21599 * 14 13 12 17 17 N 1.31530 * 119.99897 * 186.54298 * 16 14 13 18 18 Si 1.86807 * 119.99974 * 6.54656 * 16 14 13 19 19 H 1.48497 * 109.46925 * 93.04556 * 18 16 14 20 20 H 1.48497 * 109.46493 * 213.04394 * 18 16 14 21 21 H 1.48499 * 109.46830 * 333.04424 * 18 16 14 22 22 H 1.08997 * 109.47120 * 90.02379 * 1 2 3 23 23 H 1.09003 * 109.46667 * 330.02655 * 1 2 3 24 24 H 1.08990 * 109.47053 * 210.02550 * 1 2 3 25 25 H 1.07998 * 125.69711 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46765 * 87.08547 * 6 5 4 27 27 H 1.08999 * 109.47374 * 207.08208 * 6 5 4 28 28 H 1.08994 * 109.46870 * 327.08580 * 6 5 4 29 29 H 0.96998 * 119.99857 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3281 1.1271 0.0000 4 7 3.5769 0.7344 -0.0006 5 7 3.6029 -0.6661 -0.0003 6 6 4.8017 -1.5082 -0.0003 7 6 2.3118 -1.1049 0.0063 8 6 1.8652 -2.5145 0.0144 9 7 0.9476 -3.0330 -0.7614 10 8 0.8269 -4.4055 -0.4318 11 7 1.7412 -4.6781 0.6151 12 6 2.3700 -3.5720 0.8985 13 8 3.3262 -3.4236 1.8477 14 6 3.7337 -4.5394 2.4858 15 1 3.3632 -5.5050 2.1750 16 6 4.6287 -4.4468 3.5412 17 7 5.1255 -5.5391 4.0798 18 14 5.1286 -2.7709 4.1978 19 1 4.2406 -2.3971 5.3278 20 1 6.5354 -2.8240 4.6702 21 1 5.0070 -1.7596 3.1172 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 0.8903 0.5134 24 1 -0.3633 -0.8897 0.5142 25 1 1.9902 2.1529 0.0004 26 1 5.1290 -1.6741 1.0261 27 1 4.5730 -2.4659 -0.4680 28 1 5.5948 -1.0112 -0.5588 29 1 5.7512 -5.4744 4.8182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259747502.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:18 Heat of formation + Delta-G solvation = 142.748950 kcal Electronic energy + Delta-G solvation = -18235.096198 eV Core-core repulsion = 15165.776899 eV Total energy + Delta-G solvation = -3069.319299 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28709 -40.17334 -37.98372 -33.61677 -33.38114 -32.76789 -31.03058 -30.74983 -28.03374 -26.03896 -25.33205 -23.24684 -21.65804 -20.58582 -19.50813 -18.19343 -17.70734 -16.59168 -15.72165 -15.31837 -15.23045 -14.61316 -14.03101 -13.78554 -13.63199 -13.36523 -13.22754 -13.17326 -12.65394 -12.32220 -12.16839 -12.03555 -11.67105 -11.22636 -11.11857 -10.81964 -10.56348 -10.49289 -10.05851 -9.68063 -9.18406 -8.81733 -8.25627 -6.75621 -4.50380 0.84038 1.83588 2.35046 2.62903 2.84966 2.92985 3.04550 3.10056 3.21613 3.48465 3.91098 4.02293 4.55545 4.70152 4.79316 5.18588 5.24548 5.40729 5.47759 5.63191 5.70539 5.80912 5.81110 5.95259 6.10416 6.16402 6.65160 6.89151 7.37528 7.56661 7.65323 7.74036 8.54609 8.97753 10.30535 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.009724 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.553215 B = 2878.708102 C = 3791.819538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.195 4.195 3 C 0.044 3.956 4 N -0.274 5.274 5 N -0.346 5.346 6 C 0.095 3.905 7 C 0.135 3.865 8 C 0.146 3.854 9 N -0.257 5.257 10 O 0.015 5.985 11 N -0.351 5.351 12 C 0.247 3.753 13 O -0.175 6.175 14 C -0.391 4.391 15 H 0.117 0.883 16 C 0.076 3.924 17 N -0.851 5.851 18 Si 0.895 3.105 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.255 1.255 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.189 0.811 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 11.188 -5.806 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.208 4.208 3 C -0.140 4.140 4 N -0.097 5.097 5 N -0.130 5.130 6 C -0.046 4.046 7 C 0.007 3.993 8 C -0.041 4.041 9 N 0.000 5.000 10 O -0.117 6.117 11 N -0.137 5.137 12 C 0.032 3.968 13 O -0.067 6.067 14 C -0.468 4.468 15 H 0.135 0.865 16 C -0.131 4.131 17 N -0.487 5.487 18 Si 0.720 3.280 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.179 1.179 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.206 0.794 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.037 10.733 -6.156 12.540 hybrid contribution 0.057 0.588 0.950 1.119 sum -1.980 11.321 -5.206 12.617 Atomic orbital electron populations 1.20117 0.88671 1.02362 1.02085 1.20060 0.97154 0.90385 1.13211 1.23597 0.89568 0.99616 1.01248 1.77334 1.21073 0.87991 1.23326 1.48729 1.04507 1.04438 1.55292 1.22142 0.84246 0.92951 1.05236 1.17879 0.85781 0.89084 1.06591 1.22251 0.95608 0.92117 0.94085 1.79920 1.12193 0.93582 1.14352 1.93193 1.54784 1.15732 1.48028 1.80446 1.09479 1.16310 1.07480 1.23919 0.91474 0.88573 0.92814 1.83782 1.43477 1.36362 1.43055 1.20900 1.26507 0.84125 1.15273 0.86501 1.24472 0.95004 0.99019 0.94655 1.69616 1.28066 1.27770 1.23236 0.86366 0.78593 0.82647 0.80442 1.19347 1.19827 1.17904 0.91392 0.91398 0.92081 0.79447 0.88943 0.89450 0.89057 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.17 36.01 0.37 -0.56 15 2 C -0.19 -2.96 6.13 -104.73 -0.64 -3.60 15 3 C 0.04 0.60 11.92 -17.49 -0.21 0.39 15 4 N -0.27 -4.47 12.56 30.55 0.38 -4.08 15 5 N -0.35 -6.01 4.06 -64.16 -0.26 -6.27 15 6 C 0.09 1.49 10.30 59.85 0.62 2.10 15 7 C 0.13 2.41 6.87 -82.47 -0.57 1.84 15 8 C 0.15 2.87 6.21 -80.88 -0.50 2.37 15 9 N -0.26 -5.02 12.99 34.45 0.45 -4.57 15 10 O 0.02 0.32 13.62 12.24 0.17 0.49 15 11 N -0.35 -8.26 11.87 31.81 0.38 -7.88 15 12 C 0.25 5.58 7.48 -14.72 -0.11 5.47 15 13 O -0.18 -4.21 7.63 0.64 0.00 -4.21 15 14 C -0.39 -10.37 10.16 30.90 0.31 -10.05 15 15 H 0.12 3.38 7.30 -52.49 -0.38 3.00 15 16 C 0.08 1.98 5.49 -17.51 -0.10 1.88 15 17 N -0.85 -22.93 13.96 55.48 0.77 -22.16 15 18 Si 0.90 19.56 28.63 -169.99 -4.87 14.70 15 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 21 H -0.25 -5.43 5.96 56.52 0.34 -5.09 15 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 24 H 0.06 0.84 7.91 -51.93 -0.41 0.43 15 25 H 0.19 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.09 1.58 6.77 -51.93 -0.35 1.23 15 27 H 0.09 1.37 7.48 -51.93 -0.39 0.98 15 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 29 H 0.29 7.04 8.31 -40.82 -0.34 6.70 15 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -28.83 270.49 -2.15 -30.98 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.42 Total: -0.92 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.83 Total: -0.15 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 1.72 Total: -44.97 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: 0.17 Total: -3.72 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.87 Total: 14.70 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.83 -2.15 -30.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747502.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.732 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds