Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48503 * 109.47056 * 269.99745 * 3 2 1 5 5 H 1.48497 * 109.47412 * 30.00330 * 3 2 1 6 6 H 1.48506 * 109.46931 * 150.00495 * 3 2 1 7 7 C 1.37873 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99952 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46973 * 59.99781 * 9 7 2 11 11 O 1.42903 * 109.47124 * 300.00049 * 9 7 2 12 12 C 1.50697 * 109.47637 * 179.97438 * 9 7 2 13 13 C 1.38167 * 120.02671 * 94.99203 * 12 9 7 14 14 C 1.38249 * 120.05640 * 179.97438 * 13 12 9 15 15 C 1.38288 * 120.10787 * 0.03137 * 14 13 12 16 16 C 1.38122 * 120.05870 * 0.02562 * 15 14 13 17 17 C 1.38704 * 120.02748 * 274.72581 * 12 9 7 18 18 O 1.35903 * 120.05928 * 359.97438 * 17 12 9 19 19 C 1.42895 * 117.00114 * 185.80845 * 18 17 12 20 20 C 1.54038 * 113.81505 * 254.16819 * 19 18 17 21 21 O 1.44177 * 85.51931 * 223.19708 * 20 19 18 22 22 C 1.44182 * 93.34114 * 24.18965 * 21 20 19 23 23 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99960 * 300.00549 * 11 9 7 25 25 H 1.08001 * 119.97488 * 359.97438 * 13 12 9 26 26 H 1.07995 * 119.94199 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.96622 * 179.97438 * 15 14 13 28 28 H 1.07995 * 120.02610 * 179.97438 * 16 15 14 29 29 H 1.09003 * 113.00164 * 26.15450 * 19 18 17 30 30 H 1.09004 * 113.86475 * 337.34127 * 20 19 18 31 31 H 1.09003 * 113.86673 * 109.04814 * 20 19 18 32 32 H 1.08998 * 113.87015 * 221.66163 * 22 21 20 33 33 H 1.09000 * 113.86293 * 89.95200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 0.4299 -2.5751 1.1666 12 6 2.2302 -3.6446 -0.0018 13 6 2.6012 -4.2383 1.1893 14 6 3.4991 -5.2896 1.1888 15 6 4.0285 -5.7491 -0.0032 16 6 3.6617 -5.1582 -1.1965 17 6 2.7555 -4.1074 -1.1992 18 8 2.3876 -3.5290 -2.3727 19 6 2.8670 -4.1366 -3.5739 20 6 3.9963 -3.3470 -4.2625 21 8 3.2911 -3.6275 -5.4884 22 6 2.0256 -3.8008 -4.8196 23 1 -0.4850 0.8401 0.0004 24 1 0.9223 -2.5298 1.9975 25 1 2.1896 -3.8809 2.1216 26 1 3.7875 -5.7526 2.1209 27 1 4.7300 -6.5702 -0.0009 28 1 4.0758 -5.5172 -2.1270 29 1 3.0777 -5.1999 -3.4586 30 1 4.0192 -2.2896 -3.9989 31 1 4.9732 -3.8260 -4.1961 32 1 1.4395 -4.6395 -5.1952 33 1 1.4468 -2.8819 -4.7262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961003.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -65.991952 kcal Electronic energy + Delta-G solvation = -18417.258205 eV Core-core repulsion = 15410.134813 eV Total energy + Delta-G solvation = -3007.123392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65413 -39.15828 -36.68039 -35.40013 -32.14531 -30.73591 -29.76545 -28.42311 -26.60453 -26.48831 -23.35321 -22.36233 -20.80837 -19.92020 -18.20286 -16.99430 -16.53688 -16.15374 -15.83288 -15.30982 -14.65092 -14.48036 -14.09695 -13.95233 -13.85360 -12.90969 -12.69312 -12.49254 -12.10936 -11.83957 -11.56990 -11.37235 -10.97766 -10.90656 -10.89856 -10.64432 -10.40909 -10.17067 -9.70280 -9.22355 -8.66507 -8.38478 -8.18437 -7.51180 -5.99404 -4.17086 1.85832 1.97636 3.28546 3.35386 3.38402 3.55397 3.63335 4.17352 4.35272 4.47593 4.78697 5.12154 5.22698 5.24101 5.32700 5.42800 5.47886 5.51882 5.73383 5.82713 5.92888 6.04292 6.08196 6.18713 6.32635 6.56070 6.80852 6.83786 7.04662 7.32393 7.73202 7.85030 7.94569 8.15063 8.83738 9.32146 9.56986 11.04072 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.009235 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.213780 B = 3031.290572 C = 4186.783633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.266 3.734 10 H 0.073 0.927 11 O -0.561 6.561 12 C -0.095 4.095 13 C -0.087 4.087 14 C -0.157 4.157 15 C -0.108 4.108 16 C -0.214 4.214 17 C 0.123 3.877 18 O -0.280 6.280 19 C 0.010 3.990 20 C 0.021 3.979 21 O -0.378 6.378 22 C 0.045 3.955 23 H 0.261 0.739 24 H 0.344 0.656 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -9.549 -3.780 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.208 3.792 10 H 0.091 0.909 11 O -0.364 6.364 12 C -0.096 4.096 13 C -0.105 4.105 14 C -0.175 4.175 15 C -0.126 4.126 16 C -0.233 4.233 17 C 0.078 3.922 18 O -0.193 6.193 19 C -0.047 4.047 20 C -0.056 4.056 21 O -0.297 6.297 22 C -0.032 4.032 23 H 0.070 0.930 24 H 0.189 0.811 25 H 0.144 0.856 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.940 -9.327 -4.548 11.957 hybrid contribution 1.200 0.765 0.453 1.493 sum 7.139 -8.563 -4.095 11.877 Atomic orbital electron populations 1.70072 1.05869 1.26449 1.47183 1.25016 0.94708 0.98989 0.93906 0.86659 0.79972 0.83458 0.78229 1.20515 1.21099 1.19824 1.21443 0.92991 0.90405 1.54296 0.92683 1.18343 0.86754 0.87634 0.86423 0.90931 1.86628 1.38173 1.96221 1.15395 1.20889 0.99902 0.99035 0.89823 1.20787 0.96763 0.95386 0.97563 1.20945 1.00012 0.99019 0.97536 1.20675 1.00089 0.99715 0.92158 1.21086 1.02963 1.00395 0.98869 1.18814 0.94784 0.92655 0.85898 1.86395 1.70042 1.51427 1.11411 1.26076 0.95152 0.98942 0.84579 1.24643 0.97003 1.01733 0.82212 1.89676 1.20599 1.91662 1.27761 1.24290 0.88517 1.02807 0.87561 0.92952 0.81100 0.85643 0.86741 0.86823 0.86407 0.87712 0.88521 0.88873 0.88326 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.30 12.84 55.43 0.71 -24.59 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.55 -15.26 8.75 -34.44 -0.30 -15.56 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.27 6.85 2.79 -29.04 -0.08 6.77 16 10 H 0.07 2.08 7.68 -51.93 -0.40 1.68 16 11 O -0.56 -14.43 12.38 -35.23 -0.44 -14.86 16 12 C -0.10 -2.07 5.02 -104.48 -0.52 -2.60 16 13 C -0.09 -1.63 9.30 -39.60 -0.37 -2.00 16 14 C -0.16 -2.49 10.04 -39.56 -0.40 -2.89 16 15 C -0.11 -1.63 10.04 -39.61 -0.40 -2.03 16 16 C -0.21 -3.48 9.01 -39.43 -0.36 -3.84 16 17 C 0.12 2.43 6.65 -39.22 -0.26 2.17 16 18 O -0.28 -5.45 9.30 -19.43 -0.18 -5.63 16 19 C 0.01 0.15 3.89 -25.65 -0.10 0.05 16 20 C 0.02 0.29 9.05 37.61 0.34 0.63 16 21 O -0.38 -5.54 12.45 -35.23 -0.44 -5.98 16 22 C 0.04 0.60 9.05 37.61 0.34 0.94 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.34 7.70 7.32 45.56 0.33 8.04 16 25 H 0.13 2.18 6.41 -52.49 -0.34 1.84 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.12 1.58 5.95 -52.49 -0.31 1.27 16 29 H 0.11 1.33 6.03 -51.93 -0.31 1.01 16 30 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -31.85 284.94 -6.38 -38.22 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.10 Total: 8.49 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.20 Total: -16.23 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.71 Total: -24.59 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.06 Total: -26.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.85 -6.38 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961003.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.769 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds