Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48503 * 109.47056 * 269.99745 * 3 2 1 5 5 H 1.48497 * 109.47412 * 30.00330 * 3 2 1 6 6 H 1.48506 * 109.46931 * 150.00495 * 3 2 1 7 7 C 1.37873 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99952 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46973 * 59.99781 * 9 7 2 11 11 O 1.42903 * 109.47124 * 300.00049 * 9 7 2 12 12 C 1.50697 * 109.47637 * 179.97438 * 9 7 2 13 13 C 1.38167 * 120.02671 * 94.99203 * 12 9 7 14 14 C 1.38249 * 120.05640 * 179.97438 * 13 12 9 15 15 C 1.38288 * 120.10787 * 0.03137 * 14 13 12 16 16 C 1.38122 * 120.05870 * 0.02562 * 15 14 13 17 17 C 1.38704 * 120.02748 * 274.72581 * 12 9 7 18 18 O 1.35903 * 120.05928 * 359.97438 * 17 12 9 19 19 C 1.42895 * 117.00114 * 185.80845 * 18 17 12 20 20 C 1.54038 * 113.81505 * 254.16819 * 19 18 17 21 21 O 1.44177 * 85.51931 * 223.19708 * 20 19 18 22 22 C 1.44182 * 93.34114 * 24.18965 * 21 20 19 23 23 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99960 * 300.00549 * 11 9 7 25 25 H 1.08001 * 119.97488 * 359.97438 * 13 12 9 26 26 H 1.07995 * 119.94199 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.96622 * 179.97438 * 15 14 13 28 28 H 1.07995 * 120.02610 * 179.97438 * 16 15 14 29 29 H 1.09003 * 113.00164 * 26.15450 * 19 18 17 30 30 H 1.09004 * 113.86475 * 337.34127 * 20 19 18 31 31 H 1.09003 * 113.86673 * 109.04814 * 20 19 18 32 32 H 1.08998 * 113.87015 * 221.66163 * 22 21 20 33 33 H 1.09000 * 113.86293 * 89.95200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 0.4299 -2.5751 1.1666 12 6 2.2302 -3.6446 -0.0018 13 6 2.6012 -4.2383 1.1893 14 6 3.4991 -5.2896 1.1888 15 6 4.0285 -5.7491 -0.0032 16 6 3.6617 -5.1582 -1.1965 17 6 2.7555 -4.1074 -1.1992 18 8 2.3876 -3.5290 -2.3727 19 6 2.8670 -4.1366 -3.5739 20 6 3.9963 -3.3470 -4.2625 21 8 3.2911 -3.6275 -5.4884 22 6 2.0256 -3.8008 -4.8196 23 1 -0.4850 0.8401 0.0004 24 1 0.9223 -2.5298 1.9975 25 1 2.1896 -3.8809 2.1216 26 1 3.7875 -5.7526 2.1209 27 1 4.7300 -6.5702 -0.0009 28 1 4.0758 -5.5172 -2.1270 29 1 3.0777 -5.1999 -3.4586 30 1 4.0192 -2.2896 -3.9989 31 1 4.9732 -3.8260 -4.1961 32 1 1.4395 -4.6395 -5.1952 33 1 1.4468 -2.8819 -4.7262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961003.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -89.649881 kcal Electronic energy + Delta-G solvation = -18418.284090 eV Core-core repulsion = 15410.134813 eV Total energy + Delta-G solvation = -3008.149276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.85299 -40.48150 -38.14705 -37.16373 -34.29037 -32.25815 -31.05704 -29.68537 -28.42324 -27.65202 -25.13150 -23.69666 -22.26386 -21.22127 -19.53473 -19.06032 -17.73983 -17.39739 -17.14275 -16.70313 -16.67316 -15.95172 -15.60147 -15.34034 -15.12613 -14.69407 -14.32608 -13.78079 -13.42018 -13.39315 -13.24494 -12.84654 -12.74691 -12.60115 -12.40375 -12.09818 -11.95897 -11.61173 -11.16282 -10.81990 -10.75277 -10.32671 -9.63113 -8.95184 -8.11745 -6.37978 0.52187 0.62827 1.37799 1.37994 1.49135 2.32053 2.37827 2.54636 2.92651 3.11272 3.20379 3.70053 4.00076 4.04185 4.10282 4.24527 4.33932 4.36769 4.44879 4.49388 4.64486 4.76645 4.82291 4.93264 4.93647 5.13311 5.32190 5.52153 5.62869 5.67689 5.89438 6.01972 6.08167 6.61795 6.70497 7.30579 7.49470 8.90827 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.009235 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.213780 B = 3031.290572 C = 4186.783633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.049 0.951 9 C 0.273 3.727 10 H 0.026 0.974 11 O -0.577 6.577 12 C -0.140 4.140 13 C -0.097 4.097 14 C -0.154 4.154 15 C -0.094 4.094 16 C -0.210 4.210 17 C 0.105 3.895 18 O -0.315 6.315 19 C 0.003 3.997 20 C 0.022 3.978 21 O -0.386 6.386 22 C 0.043 3.957 23 H 0.262 0.738 24 H 0.357 0.643 25 H 0.127 0.873 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 -11.320 -3.714 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.215 3.785 10 H 0.043 0.957 11 O -0.382 6.382 12 C -0.141 4.141 13 C -0.115 4.115 14 C -0.172 4.172 15 C -0.111 4.111 16 C -0.228 4.228 17 C 0.060 3.940 18 O -0.229 6.229 19 C -0.054 4.054 20 C -0.055 4.055 21 O -0.306 6.306 22 C -0.033 4.033 23 H 0.071 0.929 24 H 0.203 0.797 25 H 0.145 0.855 26 H 0.168 0.832 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.456 -11.106 -4.482 14.661 hybrid contribution 0.444 1.207 0.416 1.352 sum 8.900 -9.899 -4.066 13.919 Atomic orbital electron populations 1.70207 1.07510 1.27326 1.48652 1.25859 0.95504 1.02627 0.93522 0.85601 0.78850 0.79044 0.78360 1.20092 1.20469 1.18925 1.21706 0.92724 0.91803 1.53596 0.93322 1.17904 0.86628 0.89303 0.84616 0.95661 1.86539 1.39115 1.96408 1.16179 1.20578 1.01483 0.99659 0.92348 1.20952 0.97653 0.96370 0.96566 1.21332 0.98509 0.97634 0.99690 1.21249 0.99198 0.99634 0.91064 1.21435 1.01522 0.98822 1.01011 1.19030 0.95753 0.93828 0.85340 1.86358 1.70960 1.52893 1.12665 1.26417 0.95699 1.00235 0.83033 1.24691 0.98221 1.00972 0.81573 1.89664 1.21026 1.91641 1.28245 1.24387 0.88437 1.03167 0.87336 0.92927 0.79713 0.85480 0.83198 0.82346 0.83198 0.85087 0.90410 0.85792 0.85348 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.98 12.84 21.45 0.28 -54.71 16 2 C 0.03 1.55 5.40 84.65 0.46 2.01 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.56 -32.09 8.75 25.60 0.22 -31.86 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.27 14.82 2.79 29.10 0.08 14.90 16 10 H 0.03 1.59 7.68 -2.39 -0.02 1.57 16 11 O -0.58 -31.16 12.38 -148.98 -1.84 -33.01 16 12 C -0.14 -6.20 5.02 -19.77 -0.10 -6.30 16 13 C -0.10 -3.58 9.30 22.26 0.21 -3.38 16 14 C -0.15 -4.35 10.04 22.28 0.22 -4.12 16 15 C -0.09 -2.39 10.04 22.25 0.22 -2.16 16 16 C -0.21 -6.12 9.01 22.37 0.20 -5.92 16 17 C 0.11 4.12 6.65 22.51 0.15 4.27 16 18 O -0.31 -12.54 9.30 -92.46 -0.86 -13.40 16 19 C 0.00 0.08 3.89 31.30 0.12 0.20 16 20 C 0.02 0.58 9.05 72.28 0.65 1.23 16 21 O -0.39 -10.86 12.45 -148.98 -1.86 -12.71 16 22 C 0.04 1.14 9.05 72.28 0.65 1.80 16 23 H 0.26 15.08 8.31 -92.70 -0.77 14.30 16 24 H 0.36 16.67 7.32 -74.06 -0.54 16.13 16 25 H 0.13 4.42 6.41 -2.91 -0.02 4.40 16 26 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.15 3.32 5.95 -2.91 -0.02 3.30 16 29 H 0.13 2.92 6.03 -2.39 -0.01 2.91 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -72.11 284.94 1.43 -70.68 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.59 Total: 25.85 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 3.10 Total: -29.34 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -4.56 Total: -59.12 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.11 1.43 -70.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961003.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.974 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds