Wall clock time and date at job start Mon Mar 30 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36909 * 119.99871 * 2 1 4 4 H 1.08001 * 120.00404 * 204.30573 * 3 2 1 5 5 C 1.38814 * 119.99803 * 24.30771 * 3 2 1 6 6 N 1.31558 * 120.00235 * 10.51885 * 5 3 2 7 7 Si 1.86807 * 119.99829 * 190.52240 * 5 3 2 8 8 H 1.48492 * 109.47308 * 84.94638 * 7 5 3 9 9 H 1.48504 * 109.47023 * 204.95235 * 7 5 3 10 10 H 1.48509 * 109.46769 * 324.94593 * 7 5 3 11 11 C 1.38842 * 119.99796 * 180.02562 * 2 1 3 12 12 C 1.39271 * 120.07403 * 184.97303 * 11 2 1 13 13 C 1.37610 * 118.53097 * 180.43013 * 12 11 2 14 14 C 1.40459 * 119.94021 * 359.97015 * 13 12 11 15 15 C 1.36834 * 118.42881 * 359.21476 * 14 13 12 16 16 N 1.31770 * 120.07972 * 4.99437 * 11 2 1 17 17 C 1.50943 * 125.45802 * 182.41956 * 15 14 13 18 18 S 1.81316 * 110.40740 * 340.29451 * 17 15 14 19 19 C 1.82059 * 100.89396 * 46.12865 * 18 17 15 20 20 C 1.50125 * 114.63703 * 178.83510 * 14 13 12 21 21 H 1.09000 * 109.46647 * 273.96307 * 1 2 3 22 22 H 1.08993 * 109.47034 * 33.96645 * 1 2 3 23 23 H 1.09003 * 109.46667 * 153.96898 * 1 2 3 24 24 H 0.97005 * 120.00403 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.73366 * 0.41068 * 12 11 2 26 26 H 1.08007 * 120.02551 * 179.97438 * 13 12 11 27 27 H 1.09000 * 109.31194 * 100.58640 * 17 15 14 28 28 H 1.09004 * 109.31490 * 220.00525 * 17 15 14 29 29 H 1.08996 * 109.80565 * 176.52987 * 19 18 17 30 30 H 1.08997 * 109.85428 * 55.67264 * 19 18 17 31 31 H 1.08996 * 108.67081 * 280.06199 * 20 14 13 32 32 H 1.09004 * 108.67017 * 38.09128 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1578 1.2272 -0.3850 5 6 1.5478 2.3345 0.4949 6 7 0.4096 2.2512 1.1495 7 14 2.3539 3.9989 0.2312 8 1 1.9604 4.5348 -1.0966 9 1 1.9121 4.9369 1.2944 10 1 3.8303 3.8481 0.2865 11 6 2.1592 -1.2024 -0.0005 12 6 3.5480 -1.2066 0.1039 13 6 4.2045 -2.4159 0.0911 14 6 3.4731 -3.6094 -0.0248 15 6 2.1093 -3.5324 -0.1065 16 7 1.5057 -2.3423 -0.1003 17 6 1.1687 -4.7105 -0.1827 18 16 2.0570 -6.1946 -0.7267 19 6 3.5404 -6.1128 0.3256 20 6 4.3095 -4.8557 -0.0539 21 1 -0.3632 0.0710 1.0252 22 1 -0.3633 0.8523 -0.5741 23 1 -0.3633 -0.9235 -0.4510 24 1 -0.0108 3.0540 1.4956 25 1 4.0976 -0.2811 0.1927 26 1 5.2812 -2.4473 0.1703 27 1 0.7354 -4.8900 0.8013 28 1 0.3698 -4.4888 -0.8903 29 1 4.1624 -6.9917 0.1559 30 1 3.2480 -6.0643 1.3745 31 1 4.7116 -4.9827 -1.0589 32 1 5.1407 -4.7344 0.6408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260143528.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:35 Heat of formation + Delta-G solvation = 47.217373 kcal Electronic energy + Delta-G solvation = -15953.310129 eV Core-core repulsion = 13426.141485 eV Total energy + Delta-G solvation = -2527.168645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42559 -36.44016 -33.86928 -32.27083 -31.61716 -29.22474 -27.51638 -26.09737 -24.44034 -22.55161 -21.17122 -20.43157 -17.42500 -16.38403 -16.21100 -15.29370 -14.95322 -14.64488 -14.07508 -13.79537 -13.69281 -13.27824 -13.10076 -12.88127 -12.27154 -12.10469 -11.62860 -11.34999 -11.29881 -11.17115 -10.85180 -10.77219 -10.49269 -10.37237 -9.79927 -9.37581 -8.80383 -8.54614 -8.37156 -7.50727 -6.88278 -6.45321 -3.93415 1.93844 2.22744 2.36379 2.65302 3.08712 3.11280 3.13819 3.92112 4.57208 4.69231 4.99060 5.03586 5.11875 5.16508 5.45150 5.59536 5.66894 5.79036 5.95088 6.02506 6.18446 6.28110 6.36154 6.64572 6.71606 6.94819 7.00532 7.20504 7.27943 7.31708 7.54552 7.90693 8.41094 8.95986 9.15770 9.66234 10.50426 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.046507 B = 0.005539 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.917427 B = 5053.760038 C = 5536.603824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.419 5.419 3 C -0.312 4.312 4 H 0.097 0.903 5 C 0.032 3.968 6 N -0.867 5.867 7 Si 0.932 3.068 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.378 3.622 12 C -0.234 4.234 13 C -0.040 4.040 14 C -0.258 4.258 15 C 0.188 3.812 16 N -0.582 5.582 17 C -0.019 4.019 18 S -0.267 6.267 19 C -0.075 4.075 20 C -0.048 4.048 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.271 0.729 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -9.386 -0.898 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.107 5.107 3 C -0.440 4.440 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.502 5.502 7 Si 0.758 3.242 8 H -0.200 1.200 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.133 3.867 12 C -0.260 4.260 13 C -0.065 4.065 14 C -0.267 4.267 15 C 0.048 3.952 16 N -0.305 5.305 17 C -0.168 4.168 18 S -0.041 6.041 19 C -0.224 4.224 20 C -0.087 4.087 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.929 -9.625 -1.627 10.191 hybrid contribution 1.509 1.903 0.943 2.605 sum 4.438 -7.722 -0.683 8.933 Atomic orbital electron populations 1.21368 0.79795 0.98867 1.01625 1.42487 1.05096 1.01035 1.62128 1.19615 1.00853 0.84096 1.39469 0.88514 1.25438 0.96612 1.00342 0.94960 1.70089 1.17291 1.29977 1.32869 0.85858 0.79439 0.80726 0.78214 1.20033 1.20655 1.19287 1.18197 0.88498 0.85891 0.94075 1.21221 0.94262 0.98289 1.12268 1.21188 0.98426 0.91614 0.95282 1.19208 0.93092 0.94898 1.19484 1.19868 0.89569 0.91231 0.94572 1.66852 1.40760 0.96682 1.26251 1.22024 0.98553 0.90953 1.05240 1.86686 1.25333 1.34266 1.57780 1.23240 0.96619 1.01614 1.00892 1.19963 0.96827 0.90461 1.01441 0.92569 0.92485 0.93823 0.91825 0.85659 0.87009 0.88731 0.86629 0.88030 0.89866 0.91506 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.10 8.79 59.85 0.53 3.62 16 2 N -0.42 -10.73 3.12 -122.60 -0.38 -11.11 16 3 C -0.31 -8.01 8.91 -15.07 -0.13 -8.15 16 4 H 0.10 2.39 6.39 -52.49 -0.34 2.05 16 5 C 0.03 0.81 5.14 -17.46 -0.09 0.73 16 6 N -0.87 -22.65 10.66 55.49 0.59 -22.06 16 7 Si 0.93 19.37 29.57 -169.99 -5.03 14.35 16 8 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 9 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 C 0.38 9.13 7.35 -155.66 -1.14 7.99 16 12 C -0.23 -5.12 9.27 -39.43 -0.37 -5.49 16 13 C -0.04 -0.75 9.50 -38.97 -0.37 -1.12 16 14 C -0.26 -4.68 5.75 -104.57 -0.60 -5.28 16 15 C 0.19 3.69 6.62 -82.28 -0.54 3.15 16 16 N -0.58 -13.27 8.72 -8.71 -0.08 -13.35 16 17 C -0.02 -0.31 6.41 36.12 0.23 -0.08 16 18 S -0.27 -3.89 22.33 -107.50 -2.40 -6.29 16 19 C -0.08 -0.94 6.58 36.74 0.24 -0.70 16 20 C -0.05 -0.66 5.32 -28.58 -0.15 -0.82 16 21 H 0.06 1.44 7.39 -51.93 -0.38 1.06 16 22 H 0.06 1.41 7.28 -51.93 -0.38 1.03 16 23 H 0.04 1.00 7.20 -51.93 -0.37 0.62 16 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.13 2.70 6.37 -52.49 -0.33 2.36 16 26 H 0.11 1.74 7.99 -52.48 -0.42 1.32 16 27 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 28 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -27.43 274.95 -9.44 -36.87 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.89 Total: 3.61 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.40 Total: -6.15 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.13 Total: -46.52 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -2.40 Total: -6.29 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.43 -9.44 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260143528.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.086 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds