Wall clock time and date at job start Mon Mar 30 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00250 * 2 1 4 4 H 1.48503 * 109.47048 * 273.85627 * 3 2 1 5 5 H 1.48491 * 109.47100 * 33.85267 * 3 2 1 6 6 H 1.48501 * 109.47122 * 153.85828 * 3 2 1 7 7 C 1.38820 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99231 * 342.43396 * 7 2 1 9 9 N 1.36932 * 120.00338 * 162.43580 * 7 2 1 10 10 N 1.39335 * 125.33541 * 342.31380 * 9 7 2 11 11 C 1.34057 * 113.07634 * 179.97438 * 10 9 7 12 12 O 1.21280 * 125.59060 * 179.97438 * 11 10 9 13 13 C 1.51187 * 108.82050 * 0.02562 * 11 10 9 14 14 C 1.46926 * 125.33736 * 162.29710 * 9 7 2 15 15 H 1.09001 * 110.43832 * 61.14617 * 14 9 7 16 16 C 1.50701 * 110.43783 * 298.76385 * 14 9 7 17 17 C 1.38221 * 120.00816 * 339.99873 * 16 14 9 18 18 C 1.38227 * 120.02644 * 179.97438 * 17 16 14 19 19 C 1.38268 * 120.05111 * 0.02562 * 18 17 16 20 20 C 1.38179 * 120.02308 * 359.95696 * 19 18 17 21 21 C 1.38437 * 120.01722 * 159.95697 * 16 14 9 22 22 F 1.35091 * 120.02462 * 0.04343 * 21 16 14 23 23 H 0.97000 * 119.99949 * 359.97438 * 1 2 3 24 24 H 0.97006 * 123.46673 * 0.02562 * 10 9 7 25 25 H 1.08995 * 110.47012 * 241.29436 * 13 11 10 26 26 H 1.09007 * 110.46545 * 118.70563 * 13 11 10 27 27 H 1.07998 * 119.98870 * 0.02562 * 17 16 14 28 28 H 1.08004 * 119.97827 * 180.02562 * 18 17 16 29 29 H 1.07994 * 119.99204 * 179.97438 * 19 18 17 30 30 H 1.07998 * 120.01269 * 179.74042 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4162 2.0935 -1.3969 5 1 1.4908 2.6277 0.7799 6 1 3.5861 1.4179 0.6169 7 6 2.0102 -1.2022 -0.0005 8 1 1.5079 -2.1158 0.2814 9 7 3.3317 -1.2297 -0.3584 10 7 3.9973 -0.2275 -1.0612 11 6 5.2897 -0.5086 -1.2798 12 8 6.0771 0.2024 -1.8675 13 6 5.6045 -1.8579 -0.6748 14 6 4.2700 -2.3205 -0.0612 15 1 3.9360 -3.2475 -0.5272 16 6 4.4106 -2.5027 1.4281 17 6 4.0574 -1.4782 2.2862 18 6 4.1857 -1.6451 3.6524 19 6 4.6678 -2.8365 4.1622 20 6 5.0211 -3.8621 3.3063 21 6 4.8926 -3.6963 1.9375 22 9 5.2381 -4.6982 1.0997 23 1 -0.4850 0.8401 0.0004 24 1 3.5697 0.5901 -1.3608 25 1 6.3657 -1.7604 0.0992 26 1 5.9315 -2.5548 -1.4466 27 1 3.6803 -0.5473 1.8892 28 1 3.9091 -0.8442 4.3222 29 1 4.7679 -2.9657 5.2297 30 1 5.4016 -4.7911 3.7045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261354788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:46 Heat of formation + Delta-G solvation = -1.068812 kcal Electronic energy + Delta-G solvation = -18481.568850 eV Core-core repulsion = 15386.093183 eV Total energy + Delta-G solvation = -3095.475667 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.77838 -41.69208 -39.68387 -38.06836 -34.77084 -33.91547 -31.71807 -31.21441 -30.40116 -26.40902 -24.65694 -23.42590 -22.36078 -21.78428 -20.24891 -18.65469 -18.16889 -17.49510 -17.07040 -16.67306 -16.45982 -16.19484 -15.72631 -15.63334 -15.01799 -14.68257 -14.61201 -14.14628 -14.04614 -13.66313 -13.39089 -13.07610 -12.91812 -12.70787 -12.44798 -12.05906 -11.95322 -11.47646 -11.10059 -10.86071 -9.78144 -9.50721 -8.90128 -8.36929 -5.66568 0.27951 0.40918 1.07374 1.20758 1.27845 1.47216 1.52749 2.16378 2.74430 2.95290 3.25591 3.40190 3.57462 3.69152 3.84515 4.03276 4.24499 4.28482 4.49885 4.56367 4.76583 4.87609 5.06053 5.13781 5.25599 5.29870 5.56384 5.67062 5.78230 5.96889 6.07685 6.64156 6.92369 7.36523 7.89998 8.82111 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.010455 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.009590 B = 2677.626438 C = 3339.648009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.228 4.228 8 H 0.100 0.900 9 N -0.422 5.422 10 N -0.516 5.516 11 C 0.498 3.502 12 O -0.589 6.589 13 C -0.138 4.138 14 C 0.210 3.790 15 H 0.089 0.911 16 C -0.138 4.138 17 C -0.078 4.078 18 C -0.140 4.140 19 C -0.085 4.085 20 C -0.155 4.155 21 C 0.093 3.907 22 F -0.141 7.141 23 H 0.270 0.730 24 H 0.397 0.603 25 H 0.122 0.878 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.166 0.834 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 -7.146 8.149 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.180 1.180 7 C -0.355 4.355 8 H 0.118 0.882 9 N -0.241 5.241 10 N -0.259 5.259 11 C 0.284 3.716 12 O -0.470 6.470 13 C -0.178 4.178 14 C 0.105 3.895 15 H 0.107 0.893 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.102 4.102 20 C -0.173 4.173 21 C 0.073 3.927 22 F -0.120 7.120 23 H 0.080 0.920 24 H 0.242 0.758 25 H 0.140 0.860 26 H 0.157 0.843 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.183 0.817 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.333 -6.798 7.851 14.650 hybrid contribution -0.577 1.499 -0.626 1.724 sum 9.756 -5.299 7.225 13.247 Atomic orbital electron populations 1.69824 1.06486 1.27676 1.53596 1.25380 0.95783 0.99572 1.00367 0.86483 0.79722 0.82292 0.78013 1.20911 1.21652 1.17981 1.18650 0.81069 0.95277 1.40525 0.88247 1.44150 1.06139 1.13386 1.60433 1.45904 1.09577 1.17529 1.52891 1.20599 0.80709 0.89821 0.80504 1.90692 1.51560 1.57526 1.47260 1.22509 0.97930 0.94360 1.03002 1.20091 0.87854 0.90642 0.90939 0.89341 1.20345 1.02875 0.94061 0.96791 1.21032 0.96164 0.98536 0.93870 1.21479 1.00479 0.99437 0.94437 1.21350 0.96144 0.91446 1.01306 1.21391 1.03514 1.02131 0.90287 1.17581 1.01869 0.84532 0.88671 1.91456 1.89909 1.59075 1.71545 0.92050 0.75764 0.85998 0.84316 0.87316 0.84268 0.81658 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.51 13.97 21.65 0.30 -53.20 16 2 C -0.01 -0.69 5.50 84.87 0.47 -0.22 16 3 Si 0.91 42.44 24.38 68.60 1.67 44.11 16 4 H -0.28 -13.01 6.87 99.48 0.68 -12.32 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.26 -11.65 6.55 99.48 0.65 -11.00 16 7 C -0.23 -11.57 9.14 84.04 0.77 -10.81 16 8 H 0.10 5.41 8.06 -2.91 -0.02 5.39 16 9 N -0.42 -18.63 2.58 -324.03 -0.84 -19.47 16 10 N -0.52 -22.93 4.99 -173.94 -0.87 -23.80 16 11 C 0.50 20.41 8.63 87.92 0.76 21.17 16 12 O -0.59 -27.04 18.03 -3.03 -0.05 -27.09 16 13 C -0.14 -4.39 6.60 30.34 0.20 -4.19 16 14 C 0.21 7.51 3.36 44.50 0.15 7.66 16 15 H 0.09 3.04 7.92 -2.39 -0.02 3.02 16 16 C -0.14 -4.57 4.74 -19.82 -0.09 -4.67 16 17 C -0.08 -2.70 8.81 22.26 0.20 -2.50 16 18 C -0.14 -3.78 10.04 22.27 0.22 -3.56 16 19 C -0.08 -1.78 10.04 22.26 0.22 -1.55 16 20 C -0.15 -3.42 10.03 22.31 0.22 -3.20 16 21 C 0.09 2.61 7.25 22.38 0.16 2.77 16 22 F -0.14 -3.87 16.64 44.97 0.75 -3.12 16 23 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 24 H 0.40 18.37 4.44 -213.80 -0.95 17.42 16 25 H 0.12 3.45 7.71 -2.39 -0.02 3.43 16 26 H 0.14 3.56 8.14 -2.38 -0.02 3.54 16 27 H 0.11 4.50 6.08 -2.91 -0.02 4.48 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.11 260.10 4.40 -58.71 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.15 Total: 22.95 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 3.28 Total: 0.91 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -1.40 Total: -96.47 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.75 Total: -3.12 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.67 Total: 44.11 kcal Total: -63.11 4.40 -58.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.645 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds