Wall clock time and date at job start Mon Mar 30 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00162 * 2 1 4 4 C 1.38753 * 120.05281 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.93949 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05999 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10752 * 359.95576 * 6 5 4 8 8 C 1.50700 * 119.96807 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.99882 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.38156 * 120.05788 * 0.29945 * 7 6 5 18 18 C 1.50697 * 120.02988 * 179.72564 * 17 7 6 19 19 C 1.50703 * 109.47354 * 89.99643 * 18 17 7 20 20 O 1.20823 * 119.99810 * 0.02562 * 19 18 17 21 21 O 1.34231 * 120.00060 * 180.02562 * 19 18 17 22 22 H 1.08995 * 109.47149 * 59.99910 * 1 2 3 23 23 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47177 * 300.00265 * 1 2 3 25 25 H 1.07999 * 120.02825 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.96719 * 180.02562 * 5 4 3 27 27 H 1.07994 * 119.94385 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.47210 * 145.00175 * 8 7 6 29 29 H 1.08994 * 109.47551 * 24.99827 * 8 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47323 * 210.00091 * 18 17 7 32 32 H 1.09008 * 109.46886 * 329.99794 * 18 17 7 33 33 H 0.96704 * 117.00095 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6758 0.0005 7 6 4.0560 2.5170 0.0015 8 6 5.5608 2.5981 0.0026 9 6 6.0701 2.5010 -1.4124 10 1 5.3738 2.3920 -2.2307 11 6 7.4249 2.5577 -1.6629 12 7 8.2728 2.6909 -0.6664 13 14 8.0557 2.4452 -3.4175 14 1 7.4959 3.5640 -4.2176 15 1 9.5383 2.5299 -3.4168 16 1 7.6346 1.1516 -4.0130 17 6 3.4312 1.2848 -0.0044 18 6 4.2537 0.0222 -0.0096 19 6 4.5273 -0.4051 1.4094 20 8 4.0979 0.2484 2.3305 21 8 5.2479 -1.5117 1.6501 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2129 2.3203 -0.0005 26 1 1.3340 4.5114 0.0000 27 1 3.7923 4.6380 0.0005 28 1 5.9685 1.7772 0.5926 29 1 5.8732 3.5477 0.4368 30 1 9.2259 2.7304 -0.8426 31 1 3.7066 -0.7658 -0.5273 32 1 5.1981 0.2058 -0.5222 33 1 5.3968 -1.7458 2.5765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396030342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:55 Heat of formation + Delta-G solvation = -117.055355 kcal Electronic energy + Delta-G solvation = -18391.134458 eV Core-core repulsion = 15381.796791 eV Total energy + Delta-G solvation = -3009.337667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19837 -39.23182 -37.23549 -35.57165 -33.53718 -32.31951 -30.59205 -27.93910 -27.28953 -26.43733 -23.28868 -22.16888 -20.76096 -19.74544 -17.60028 -17.15487 -16.39369 -16.14258 -15.91409 -15.35692 -15.14966 -14.93852 -14.58046 -13.58758 -13.29972 -12.83906 -12.60512 -12.24324 -11.96998 -11.82355 -11.68570 -11.22136 -11.12462 -10.96233 -10.72024 -10.64991 -10.58879 -10.30418 -10.02797 -9.56344 -9.46974 -8.46273 -7.93702 -7.59656 -6.08219 -4.13531 1.89925 2.09502 2.82058 3.30420 3.35084 3.37832 3.58119 3.64161 4.35389 4.52892 5.11254 5.21863 5.25849 5.26091 5.34994 5.52165 5.61872 5.73796 5.90821 5.99980 6.05951 6.30770 6.46249 6.64165 6.81592 6.97280 7.04236 7.10811 7.37018 7.52253 7.75001 7.85075 7.88310 8.24856 8.43953 8.92300 9.50955 11.01310 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.007918 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.035559 B = 3535.541630 C = 4180.498392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.135 3.865 4 C -0.235 4.235 5 C -0.081 4.081 6 C -0.159 4.159 7 C 0.017 3.983 8 C 0.047 3.953 9 C -0.516 4.516 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.111 4.111 18 C -0.066 4.066 19 C 0.487 3.513 20 O -0.515 6.515 21 O -0.521 6.521 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 -5.097 1.543 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.091 3.909 4 C -0.254 4.254 5 C -0.099 4.099 6 C -0.178 4.178 7 C 0.017 3.983 8 C 0.011 3.989 9 C -0.554 4.554 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.330 3.670 20 O -0.403 6.403 21 O -0.332 6.332 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.069 0.931 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.139 0.861 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.794 -4.986 1.425 12.883 hybrid contribution 0.187 0.050 -0.276 0.337 sum -11.606 -4.936 1.149 12.664 Atomic orbital electron populations 1.22938 0.79277 1.03143 1.01053 1.86008 1.20674 1.27618 1.89138 1.18757 0.91598 0.83744 0.96837 1.20879 0.98934 0.92444 1.13101 1.20828 0.94735 0.96362 0.97946 1.20980 0.93086 0.98581 1.05109 1.20384 0.98894 0.90468 0.88574 1.18398 0.84011 0.98674 0.97847 1.20982 0.91633 1.51201 0.91626 0.92212 1.25013 0.96879 0.94968 0.97235 1.69954 1.02615 1.49334 1.30956 0.86598 0.77628 0.78851 0.84653 1.20143 1.21227 1.19991 1.18388 0.89166 0.94348 1.09297 1.20124 1.03868 0.95978 0.90297 1.23598 0.73453 0.76840 0.93092 1.90667 1.49282 1.53523 1.46842 1.84568 1.68556 1.44478 1.35597 0.92959 0.88872 0.93055 0.86441 0.86670 0.86083 0.95265 0.94976 0.92657 0.87711 0.84504 0.74127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.27 9.55 -19.44 -0.19 -5.46 16 3 C 0.14 2.52 6.66 -39.22 -0.26 2.25 16 4 C -0.23 -3.93 9.04 -39.43 -0.36 -4.28 16 5 C -0.08 -1.38 10.04 -39.61 -0.40 -1.77 16 6 C -0.16 -3.19 9.68 -39.56 -0.38 -3.57 16 7 C 0.02 0.38 5.07 -104.65 -0.53 -0.15 16 8 C 0.05 1.22 4.42 -29.03 -0.13 1.09 16 9 C -0.52 -13.94 8.30 -34.44 -0.29 -14.23 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 13 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.11 -2.31 4.39 -104.48 -0.46 -2.77 16 18 C -0.07 -1.28 5.05 -29.03 -0.15 -1.43 16 19 C 0.49 9.43 7.91 36.01 0.28 9.71 16 20 O -0.52 -11.31 16.79 -18.75 -0.31 -11.63 16 21 O -0.52 -8.25 13.42 -39.26 -0.53 -8.77 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 26 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.03 0.79 6.65 -51.93 -0.35 0.44 16 29 H 0.03 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.10 1.79 7.54 -51.93 -0.39 1.39 16 32 H 0.14 2.90 6.15 -51.92 -0.32 2.58 16 33 H 0.40 4.42 9.10 45.56 0.41 4.83 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -32.47 289.14 -5.72 -38.19 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.00 Total: 4.58 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.77 Total: -12.22 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.74 Total: -25.02 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.03 Total: -25.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.47 -5.72 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396030342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.869 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds