Wall clock time and date at job start Mon Mar 30 2020 04:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99572 * 2 1 4 4 C 1.38734 * 120.05470 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94522 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05604 * 0.02751 * 5 4 3 7 7 C 1.50696 * 119.94607 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47259 * 89.99895 * 7 6 5 9 9 O 1.20830 * 119.99594 * 0.02562 * 8 7 6 10 10 O 1.34222 * 120.00024 * 179.72462 * 8 7 6 11 11 C 1.45201 * 116.99867 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47187 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00326 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00097 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00048 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00140 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47194 * 89.99471 * 16 14 12 18 18 H 1.48495 * 109.47249 * 210.00017 * 16 14 12 19 19 H 1.48498 * 109.46802 * 329.99745 * 16 14 12 20 20 C 1.38267 * 120.11349 * 0.24590 * 6 5 4 21 21 C 1.38155 * 120.04879 * 359.45401 * 20 6 5 22 22 H 1.09003 * 109.47035 * 299.99778 * 1 2 3 23 23 H 1.08995 * 109.47478 * 60.00325 * 1 2 3 24 24 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.02689 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.97484 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47545 * 330.00236 * 7 6 5 28 28 H 1.08998 * 109.47669 * 210.00179 * 7 6 5 29 29 H 1.09009 * 109.46864 * 300.00062 * 11 10 8 30 30 H 1.09001 * 109.47271 * 60.00074 * 11 10 8 31 31 H 0.96999 * 119.99817 * 180.02562 * 15 14 12 32 32 H 1.07994 * 119.97741 * 179.70350 * 20 6 5 33 33 H 1.08005 * 120.02309 * 180.24506 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2143 5.4673 -1.4177 9 8 3.8578 4.7685 -2.3366 10 8 4.8084 6.6458 -1.6619 11 6 4.9956 7.0137 -3.0540 12 6 5.6734 8.3574 -3.1317 13 1 5.9368 8.8826 -2.2256 14 6 5.9573 8.9163 -4.3597 15 7 6.5484 10.0892 -4.4276 16 14 5.5011 8.0083 -5.9272 17 1 4.1304 8.3986 -6.3443 18 1 6.4644 8.3600 -7.0012 19 1 5.5460 6.5444 -5.6821 20 6 1.9209 3.6049 0.0068 21 6 1.2914 2.3751 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.0208 0.3801 0.0014 26 1 5.1344 2.5752 0.0011 27 1 4.9436 4.9381 0.5168 28 1 3.3576 5.7461 0.5170 29 1 5.6157 6.2652 -3.5474 30 1 4.0261 7.0662 -3.5494 31 1 6.7478 10.4825 -5.2915 32 1 1.3340 4.5114 0.0121 33 1 0.2127 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526915257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:57 Heat of formation + Delta-G solvation = -103.855306 kcal Electronic energy + Delta-G solvation = -17255.021718 eV Core-core repulsion = 14246.256448 eV Total energy + Delta-G solvation = -3008.765270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36380 -39.55552 -37.67167 -35.65448 -32.82816 -32.31103 -31.14753 -28.91424 -28.04964 -26.57589 -22.87680 -22.64075 -21.48135 -20.00183 -18.29055 -17.33329 -16.55845 -16.47807 -15.92983 -15.76296 -15.57107 -15.17372 -14.38714 -14.12203 -13.96248 -13.57984 -12.85640 -12.79772 -12.64625 -12.19966 -11.90196 -11.79469 -11.65576 -11.18501 -11.12430 -10.96134 -10.88473 -10.10441 -9.77354 -9.71480 -9.41778 -9.04827 -8.71782 -8.19247 -6.23706 -4.25975 1.28549 1.31792 2.83332 3.09875 3.21788 3.27921 3.34985 3.41681 3.92003 4.27825 4.64365 4.70546 4.77794 4.87618 4.90744 5.07824 5.19724 5.20295 5.29094 5.44206 5.59161 5.60926 5.68157 5.96120 6.16920 6.25711 6.45307 6.55719 6.66528 6.79917 7.21768 7.25123 7.48543 8.20741 8.60027 8.84114 9.32543 10.88161 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.043055 B = 0.004015 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.172950 B = 6972.246767 C = 7252.520717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.150 4.150 5 C -0.063 4.063 6 C -0.104 4.104 7 C -0.073 4.073 8 C 0.449 3.551 9 O -0.517 6.517 10 O -0.346 6.346 11 C 0.179 3.821 12 C -0.533 4.533 13 H 0.087 0.913 14 C 0.079 3.921 15 N -0.888 5.888 16 Si 0.871 3.129 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.063 4.063 21 C -0.207 4.207 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -17.267 11.051 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.292 3.708 9 O -0.407 6.407 10 O -0.262 6.262 11 C 0.107 3.893 12 C -0.570 4.570 13 H 0.105 0.895 14 C -0.124 4.124 15 N -0.526 5.526 16 Si 0.697 3.303 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.081 4.081 21 C -0.225 4.225 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.487 -17.475 10.608 22.976 hybrid contribution -0.503 -0.195 -1.131 1.254 sum -10.990 -17.671 9.477 22.866 Atomic orbital electron populations 1.23038 0.78549 1.03754 1.01416 1.86052 1.21290 1.27127 1.88885 1.19028 0.92405 0.84024 0.96752 1.20352 0.91311 0.98513 1.06726 1.20845 0.99919 0.90934 0.96448 1.19274 0.93570 0.93837 1.03734 1.20234 1.03446 0.94849 0.92499 1.23435 0.75123 0.80325 0.91924 1.90625 1.48066 1.55109 1.46895 1.86476 1.70085 1.34924 1.34702 1.21252 0.96764 0.96913 0.74390 1.20812 1.39760 1.00974 0.95473 0.89452 1.24674 0.94338 0.94770 0.98628 1.69851 1.40845 1.16101 1.25754 0.86906 0.79101 0.81074 0.83221 1.19607 1.20416 1.18638 1.20812 0.93802 0.97225 0.96302 1.21153 0.99876 0.92245 1.09275 0.92696 0.92605 0.88387 0.85201 0.85188 0.87057 0.87131 0.95567 0.96049 0.92030 0.85665 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.63 10.50 -19.43 -0.20 -3.84 16 3 C 0.12 1.53 6.69 -39.22 -0.26 1.27 16 4 C -0.15 -1.86 9.99 -39.43 -0.39 -2.26 16 5 C -0.06 -0.81 9.69 -39.61 -0.38 -1.19 16 6 C -0.10 -1.40 4.38 -104.60 -0.46 -1.86 16 7 C -0.07 -0.98 5.94 -29.03 -0.17 -1.16 16 8 C 0.45 8.78 7.95 36.01 0.29 9.07 16 9 O -0.52 -11.58 15.78 -18.75 -0.30 -11.87 16 10 O -0.35 -7.97 10.20 -39.24 -0.40 -8.37 16 11 C 0.18 4.66 4.29 36.00 0.15 4.81 16 12 C -0.53 -15.55 10.00 -34.44 -0.34 -15.89 16 13 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 15 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 16 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 C -0.06 -0.80 9.69 -39.60 -0.38 -1.18 16 21 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 22 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 23 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 27 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 28 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.03 0.69 7.19 -51.92 -0.37 0.32 16 30 H 0.02 0.56 7.56 -51.93 -0.39 0.17 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -33.92 292.82 -5.82 -39.73 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.01 Total: -3.03 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.42 Total: -7.79 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.90 Total: -24.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.92 -5.82 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526915257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.123 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds