Wall clock time and date at job start Mon Mar 30 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00064 * 3 2 1 5 5 H 1.48507 * 109.46904 * 29.99727 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99550 * 3 2 1 7 7 C 1.39582 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00383 * 0.02562 * 7 2 1 9 9 N 1.36126 * 119.99932 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21503 * 119.99509 * 0.02562 * 10 9 7 12 12 C 1.48826 * 120.00107 * 180.02562 * 10 9 7 13 13 O 1.21443 * 119.99873 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00080 * 180.27489 * 12 10 9 15 15 C 1.46500 * 120.00429 * 179.72117 * 14 12 10 16 16 C 1.50698 * 109.47464 * 180.02562 * 15 14 12 17 17 N 1.31788 * 119.12470 * 269.73593 * 16 15 14 18 18 C 1.32338 * 120.81732 * 179.76189 * 17 16 15 19 19 C 1.38600 * 119.10573 * 0.49976 * 18 17 16 20 20 C 1.38599 * 118.39545 * 359.75420 * 19 18 17 21 21 N 1.31801 * 119.11883 * 90.00482 * 16 15 14 22 22 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99701 * 0.02562 * 9 7 2 24 24 H 0.97000 * 120.00112 * 359.73006 * 14 12 10 25 25 H 1.09000 * 109.47205 * 300.01086 * 15 14 12 26 26 H 1.09001 * 109.46541 * 60.00485 * 15 14 12 27 27 H 1.07996 * 120.44646 * 180.23473 * 18 17 16 28 28 H 1.07993 * 120.80180 * 179.77242 * 19 18 17 29 29 H 1.07999 * 120.44400 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4414 2.6527 0.7000 6 1 3.5416 1.4403 0.7001 7 6 2.0081 -1.2088 0.0005 8 1 1.4681 -2.1442 0.0005 9 7 3.3693 -1.2088 0.0011 10 6 4.0433 -2.3759 0.0021 11 8 3.4358 -3.4281 0.0021 12 6 5.5316 -2.3759 0.0033 13 8 6.1387 -1.3241 0.0037 14 7 6.2055 -3.5430 -0.0013 15 6 7.6705 -3.5430 -0.0063 16 6 8.1729 -4.9637 -0.0114 17 7 8.3957 -5.5694 1.1376 18 6 8.8325 -6.8181 1.1723 19 6 9.0651 -7.4844 -0.0206 20 6 8.8240 -6.8125 -1.2086 21 7 8.3828 -5.5657 -1.1650 22 1 -0.4850 0.8400 -0.0004 23 1 3.8543 -0.3687 0.0014 24 1 5.7206 -4.3831 -0.0014 25 1 8.0308 -3.0273 -0.8965 26 1 8.0368 -3.0309 0.8835 27 1 9.0095 -7.3100 2.1173 28 1 9.4252 -8.5025 -0.0243 29 1 8.9936 -7.3001 -2.1572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702330683.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:19 Heat of formation + Delta-G solvation = -39.632636 kcal Electronic energy + Delta-G solvation = -17018.965803 eV Core-core repulsion = 13941.737845 eV Total energy + Delta-G solvation = -3077.227958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14267 -41.34781 -39.29682 -36.75834 -35.94774 -34.77244 -33.99209 -33.11165 -29.18318 -27.64790 -25.54105 -24.69210 -23.32329 -21.43130 -20.99331 -19.11469 -18.63498 -17.88132 -17.72404 -16.98354 -16.76446 -16.44805 -16.06421 -15.49303 -15.30042 -15.12754 -14.74621 -14.46065 -14.40550 -14.02517 -13.76825 -13.08721 -12.58009 -12.56299 -12.00353 -11.93322 -11.89266 -11.72147 -10.72909 -10.49396 -10.39807 -10.34063 -10.29108 -8.63319 -6.17605 -0.27305 0.12411 0.46698 1.29791 1.34104 1.40179 1.63871 2.10563 2.24914 2.68883 2.72592 3.04848 3.08632 3.16570 3.73749 3.76347 3.98617 4.17049 4.34950 4.35933 4.55556 4.88201 5.03867 5.25426 5.38386 5.71697 5.93893 6.02350 6.30579 6.54724 6.81079 7.01154 7.11860 7.59796 8.50987 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.051311 B = 0.004247 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.563417 B = 6591.877099 C = 6855.452441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.251 1.251 5 H -0.256 1.256 6 H -0.247 1.247 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.528 5.528 10 C 0.407 3.593 11 O -0.605 6.605 12 C 0.530 3.470 13 O -0.553 6.553 14 N -0.687 5.687 15 C 0.192 3.808 16 C 0.283 3.717 17 N -0.528 5.528 18 C 0.134 3.866 19 C -0.199 4.199 20 C 0.134 3.866 21 N -0.528 5.528 22 H 0.291 0.709 23 H 0.394 0.606 24 H 0.412 0.588 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.203 0.797 28 H 0.194 0.806 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.661 -11.568 -0.053 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.194 4.194 3 Si 0.768 3.232 4 H -0.175 1.175 5 H -0.180 1.180 6 H -0.171 1.171 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.166 5.166 10 C 0.191 3.809 11 O -0.493 6.493 12 C 0.312 3.688 13 O -0.431 6.431 14 N -0.340 5.340 15 C 0.068 3.932 16 C 0.014 3.986 17 N -0.243 5.243 18 C -0.031 4.031 19 C -0.221 4.221 20 C -0.031 4.031 21 N -0.243 5.243 22 H 0.102 0.898 23 H 0.231 0.769 24 H 0.248 0.752 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.220 0.780 28 H 0.211 0.789 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 20.192 -10.459 -0.049 22.740 hybrid contribution -0.008 -0.352 0.006 0.352 sum 20.184 -10.811 -0.043 22.897 Atomic orbital electron populations 1.69544 1.07898 1.30459 1.44791 1.26106 0.96408 1.02281 0.94620 0.85580 0.79428 0.77481 0.80693 1.17506 1.17972 1.17078 1.19180 0.80321 0.96115 1.51280 0.90431 1.41674 1.06662 1.07612 1.60651 1.19496 0.88048 0.84661 0.88646 1.90604 1.70042 1.31413 1.57237 1.19798 0.87990 0.84157 0.76843 1.90686 1.70301 1.31513 1.50627 1.45400 1.06796 1.08578 1.73193 1.19987 0.78530 0.89790 1.04889 1.22671 0.94798 0.96493 0.84613 1.68241 1.13270 1.12546 1.30278 1.23995 0.89241 0.88616 1.01262 1.23453 1.00553 1.04576 0.93468 1.23994 0.89188 0.88592 1.01335 1.68244 1.13369 1.12707 1.30010 0.89839 0.76947 0.75213 0.88296 0.88310 0.78013 0.78859 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.88 13.94 21.76 0.30 -50.58 15 2 C 0.01 0.61 5.51 85.14 0.47 1.08 15 3 Si 0.95 39.57 27.74 68.60 1.90 41.47 15 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 15 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 6 H -0.25 -9.75 6.53 99.48 0.65 -9.10 15 7 C -0.34 -19.90 10.16 84.35 0.86 -19.04 15 8 H 0.08 5.21 7.36 -2.91 -0.02 5.19 15 9 N -0.53 -27.42 5.06 -308.87 -1.56 -28.98 15 10 C 0.41 20.48 7.82 87.08 0.68 21.16 15 11 O -0.61 -33.81 16.03 -3.72 -0.06 -33.87 15 12 C 0.53 22.22 7.87 87.08 0.69 22.91 15 13 O -0.55 -23.81 16.47 -3.54 -0.06 -23.87 15 14 N -0.69 -23.80 5.54 -468.75 -2.60 -26.40 15 15 C 0.19 5.45 6.11 85.63 0.52 5.98 15 16 C 0.28 7.17 7.01 138.75 0.97 8.15 15 17 N -0.53 -12.22 10.33 -187.84 -1.94 -14.16 15 18 C 0.13 1.89 11.31 84.70 0.96 2.85 15 19 C -0.20 -1.93 10.17 22.44 0.23 -1.70 15 20 C 0.13 1.90 11.30 84.70 0.96 2.85 15 21 N -0.53 -12.22 10.33 -187.85 -1.94 -14.16 15 22 H 0.29 14.97 8.30 -92.71 -0.77 14.20 15 23 H 0.39 18.64 5.22 -92.71 -0.48 18.16 15 24 H 0.41 14.37 7.92 -92.71 -0.73 13.64 15 25 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.20 1.35 8.06 -2.91 -0.02 1.32 15 28 H 0.19 0.13 8.06 -2.91 -0.02 0.11 15 29 H 0.20 1.35 8.06 -2.91 -0.02 1.32 15 Total: -1.00 -74.96 272.70 0.32 -74.64 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.06 Total: 31.68 kcal Atomic # 6 Polarization: 37.90 SS G_CDS: 6.33 Total: 44.23 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -7.74 Total: -134.28 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.12 Total: -57.73 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -74.96 0.32 -74.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702330683.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.005 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds