Wall clock time and date at job start Mon Mar 30 2020 03:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99759 * 2 1 4 4 H 1.48502 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47437 * 300.00312 * 3 2 1 6 6 H 1.48494 * 109.47329 * 60.00445 * 3 2 1 7 7 C 1.37873 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99425 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00633 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20836 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98552 * 139.65724 * 10 9 7 12 12 C 1.34770 * 136.06086 * 152.84580 * 11 10 9 13 13 O 1.21517 * 120.00232 * 176.89226 * 12 11 10 14 14 C 1.48159 * 119.99895 * 356.89219 * 12 11 10 15 15 C 1.39896 * 120.90636 * 187.59739 * 14 12 11 16 16 C 1.38051 * 119.06252 * 180.02562 * 15 14 12 17 17 N 1.31884 * 120.93722 * 0.02562 * 16 15 14 18 18 C 1.31958 * 122.01016 * 359.97438 * 17 16 15 19 19 F 1.35103 * 119.58638 * 179.97438 * 18 17 16 20 20 C 1.38527 * 120.82966 * 359.72297 * 18 17 16 21 21 C 1.47076 * 87.88526 * 332.87649 * 11 10 9 22 22 H 0.96996 * 119.99754 * 359.97438 * 1 2 3 23 23 H 1.08994 * 113.40833 * 46.80075 * 9 7 2 24 24 H 1.08999 * 113.47071 * 24.87664 * 10 9 7 25 25 H 1.09000 * 113.46741 * 254.43731 * 10 9 7 26 26 H 1.07994 * 120.47103 * 359.97438 * 15 14 12 27 27 H 1.07995 * 119.52728 * 179.97438 * 16 15 14 28 28 H 1.07996 * 120.51852 * 180.29313 * 20 18 17 29 29 H 1.08996 * 113.46314 * 141.89992 * 21 11 10 30 30 H 1.08999 * 113.46980 * 272.28620 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2100 -4.3575 0.9509 12 6 0.8346 -5.6113 1.2724 13 8 0.0436 -5.7959 2.1762 14 6 1.3864 -6.7647 0.5238 15 6 0.8954 -8.0580 0.7323 16 6 1.4377 -9.1050 0.0143 17 7 2.4056 -8.8997 -0.8577 18 6 2.8982 -7.6970 -1.0856 19 9 3.8902 -7.5428 -1.9897 20 6 2.4076 -6.5897 -0.4132 21 6 0.8603 -3.0003 1.3968 22 1 -0.4849 0.8400 0.0004 23 1 0.4413 -2.5317 -0.7294 24 1 3.1384 -3.5658 0.4201 25 1 2.1851 -4.2532 -0.9637 26 1 0.1039 -8.2349 1.4454 27 1 1.0646 -10.1065 0.1697 28 1 2.8113 -5.6069 -0.6071 29 1 -0.1991 -2.8768 1.6216 30 1 1.5061 -2.6241 2.1901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855475715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:57 Heat of formation + Delta-G solvation = 6.311343 kcal Electronic energy + Delta-G solvation = -17429.806105 eV Core-core repulsion = 14334.650466 eV Total energy + Delta-G solvation = -3095.155639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.09689 -40.58183 -39.21106 -37.27024 -33.16336 -32.65318 -31.07860 -29.34237 -25.83485 -25.46057 -24.29427 -23.34736 -20.82196 -19.26394 -17.76401 -17.38446 -16.89519 -16.23567 -16.16099 -16.06561 -15.14425 -14.87872 -14.51683 -14.28647 -13.64935 -13.60849 -13.06080 -12.62122 -12.52250 -12.12328 -11.72863 -11.44318 -11.04754 -10.86993 -10.46314 -10.16692 -10.11618 -9.92704 -9.25945 -9.20148 -9.13873 -8.68429 -8.11391 -6.26331 -4.33519 0.53278 0.73781 2.92983 3.15908 3.19854 3.28324 3.30874 3.38456 3.66524 4.23135 4.27896 4.55287 4.71706 4.78715 5.02899 5.26365 5.37925 5.55443 5.65196 5.78414 5.97916 6.08212 6.20485 6.35101 6.39806 6.57159 6.74459 7.39783 7.41333 7.70332 8.04245 8.19431 8.43084 8.70796 9.34400 10.83304 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.032914 B = 0.005277 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.485056 B = 5305.168965 C = 5995.945880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.631 5.631 12 C 0.570 3.430 13 O -0.546 6.546 14 C -0.044 4.044 15 C -0.132 4.132 16 C 0.129 3.871 17 N -0.507 5.507 18 C 0.303 3.697 19 F -0.110 7.110 20 C -0.176 4.176 21 C 0.106 3.894 22 H 0.265 0.735 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.156 0.844 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.064 0.936 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -12.095 -0.793 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.018 3.982 10 C -0.042 4.042 11 N -0.364 5.364 12 C 0.359 3.641 13 O -0.425 6.425 14 C -0.055 4.055 15 C -0.153 4.153 16 C -0.027 4.027 17 N -0.222 5.222 18 C 0.149 3.851 19 F -0.089 7.089 20 C -0.198 4.198 21 C -0.015 4.015 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.173 0.827 27 H 0.191 0.809 28 H 0.186 0.814 29 H 0.083 0.917 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.462 -12.929 -0.749 13.406 hybrid contribution 0.323 1.526 0.287 1.586 sum 3.785 -11.403 -0.462 12.024 Atomic orbital electron populations 1.69961 1.06142 1.27272 1.48528 1.25044 0.94866 0.99564 0.94022 0.86452 0.80137 0.83166 0.77796 1.19496 1.20805 1.20835 1.20901 0.93042 0.89353 1.52620 0.91580 1.20378 0.94468 0.90986 0.92324 1.23742 0.95129 0.94342 0.91005 1.49967 1.41800 1.04786 1.39813 1.17539 0.82319 0.81227 0.83056 1.90747 1.36190 1.84481 1.31117 1.20440 0.94979 0.94976 0.95107 1.22366 1.00982 0.91561 1.00420 1.22505 0.90443 0.99769 0.89995 1.66848 1.12713 1.23874 1.18750 1.18010 0.87891 0.89743 0.89447 1.91642 1.57540 1.95521 1.64194 1.22820 0.98634 1.01168 0.97134 1.23715 1.00690 0.75118 1.01971 0.92506 0.91064 0.89749 0.91544 0.82670 0.80949 0.81390 0.91742 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.65 13.26 55.43 0.74 -22.91 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -12.61 8.82 -34.44 -0.30 -12.91 16 8 H 0.07 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.04 0.83 3.79 -91.26 -0.35 0.48 16 10 C 0.08 1.41 6.16 -8.50 -0.05 1.36 16 11 N -0.63 -12.12 3.68 -186.21 -0.69 -12.80 16 12 C 0.57 10.70 8.03 -12.19 -0.10 10.60 16 13 O -0.55 -11.70 17.25 5.35 0.09 -11.61 16 14 C -0.04 -0.67 5.91 -104.66 -0.62 -1.29 16 15 C -0.13 -1.65 9.68 -39.03 -0.38 -2.03 16 16 C 0.13 1.41 11.17 -17.60 -0.20 1.21 16 17 N -0.51 -6.81 10.35 -13.64 -0.14 -6.96 16 18 C 0.30 4.22 8.41 -17.39 -0.15 4.07 16 19 F -0.11 -1.52 17.29 2.25 0.04 -1.49 16 20 C -0.18 -2.48 9.25 -38.93 -0.36 -2.84 16 21 C 0.11 2.27 8.18 -8.49 -0.07 2.20 16 22 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 23 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 24 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 25 H 0.07 1.04 6.12 -51.93 -0.32 0.72 16 26 H 0.16 1.75 7.76 -52.49 -0.41 1.35 16 27 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.17 2.27 4.00 -52.49 -0.21 2.06 16 29 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -28.43 272.04 -6.13 -34.57 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -2.59 Total: 0.10 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.67 Total: 2.51 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.09 Total: -42.67 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.43 -6.13 -34.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.880 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds