Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46811 * 60.00153 * 8 6 4 10 10 H 1.48499 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47123 * 299.99953 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 C 1.34779 * 119.99726 * 239.99897 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 C 1.47202 * 112.85109 * 48.80850 * 16 14 12 18 18 N 5.01454 * 124.40787 * 137.79916 * 2 1 3 19 19 C 1.53777 * 113.61366 * 277.49512 * 16 14 12 20 20 C 1.53785 * 87.08226 * 220.02213 * 19 16 14 21 21 C 1.52995 * 113.61277 * 139.98462 * 20 19 16 22 22 C 1.53781 * 113.61038 * 179.97438 * 16 14 12 23 23 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 25 25 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 26 26 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 28 28 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 29 29 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 30 30 H 1.08999 * 113.61782 * 334.57008 * 19 16 14 31 31 H 1.08998 * 113.61063 * 105.47799 * 19 16 14 32 32 H 1.08997 * 113.61413 * 270.88892 * 20 19 16 33 33 H 1.08998 * 109.47429 * 322.50098 * 21 20 19 34 34 H 1.09000 * 109.47441 * 82.50821 * 21 20 19 35 35 H 1.09005 * 109.46855 * 202.50297 * 21 20 19 36 36 H 1.09000 * 113.61895 * 254.52616 * 22 16 14 37 37 H 1.09005 * 113.61473 * 25.35170 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0084 10 1 1.8268 -0.4194 -5.2205 11 1 3.8074 -1.1185 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0866 1.1252 1.8912 16 6 3.2951 -0.7462 3.3139 17 6 3.8977 -2.0550 3.0127 18 7 4.3636 -3.0648 2.7791 19 6 2.2730 -0.7860 4.4621 20 6 3.4509 -0.5226 5.4151 21 6 3.1178 0.4518 6.5465 22 6 4.1653 0.1374 4.2233 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7080 1.1612 -3.4843 27 1 2.4158 -2.7378 0.9713 28 1 0.6905 -2.3003 0.9844 29 1 1.6239 -2.2855 2.5000 30 1 1.5476 0.0270 4.4294 31 1 1.8096 -1.7628 4.6004 32 1 3.9390 -1.4312 5.7675 33 1 2.4624 1.2367 6.1690 34 1 2.6159 -0.0844 7.3519 35 1 4.0378 0.8974 6.9249 36 1 5.2290 -0.0942 4.1690 37 1 3.9585 1.2030 4.1243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156950449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = 13.084854 kcal Electronic energy + Delta-G solvation = -18858.983499 eV Core-core repulsion = 16023.414981 eV Total energy + Delta-G solvation = -2835.568518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74269 -37.91923 -36.06999 -35.27263 -32.89389 -30.66391 -29.23186 -26.31772 -25.90265 -25.27983 -24.90185 -21.46734 -20.57426 -18.85220 -17.28482 -16.45512 -15.76628 -15.62135 -15.17321 -14.68399 -14.45840 -13.82433 -13.41549 -13.24001 -13.02249 -12.73058 -12.61136 -12.45320 -12.21189 -12.16700 -11.61750 -11.49474 -11.24177 -11.05478 -10.97677 -10.89453 -10.81965 -10.68028 -10.37599 -10.28828 -10.18361 -9.22602 -9.04202 -8.45065 -7.70351 -6.09767 -4.17689 2.60170 2.73687 3.15834 3.28078 3.32555 3.35693 3.78105 3.87129 4.33328 4.38436 4.43001 4.64815 4.82685 5.13362 5.22024 5.32141 5.50794 5.52789 5.62144 5.66835 5.72734 5.86628 5.97412 5.98168 6.06965 6.25011 6.30790 6.71608 6.76427 6.99728 7.32034 7.43726 7.55932 7.67858 7.96436 8.13969 8.41391 8.73654 8.91325 9.48833 10.95454 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.006183 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.294450 B = 4527.686959 C = 4843.445226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.082 3.918 14 C 0.526 3.474 15 O -0.534 6.534 16 C -0.025 4.025 17 C 0.237 3.763 18 N -0.420 5.420 19 C -0.103 4.103 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.096 4.096 23 H 0.030 0.970 24 H 0.013 0.987 25 H 0.095 0.905 26 H 0.264 0.736 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -2.293 15.196 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.062 4.062 14 C 0.310 3.690 15 O -0.412 6.412 16 C -0.032 4.032 17 C -0.081 4.081 18 N -0.095 5.095 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.198 4.198 22 C -0.135 4.135 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.336 -3.095 14.535 14.921 hybrid contribution 0.133 -0.385 -1.012 1.091 sum 1.469 -3.479 13.523 14.040 Atomic orbital electron populations 1.22099 0.97970 0.99475 1.01023 1.19021 0.91050 0.94498 0.79649 0.91593 1.21261 1.32013 1.13066 0.90283 0.92439 1.24865 0.94872 0.94945 0.98909 1.69864 1.36211 1.22533 1.23931 0.86554 0.79308 0.79614 0.81940 1.20224 1.21075 1.20235 1.48258 1.48363 1.11486 1.23160 1.21709 1.02056 0.83236 0.99234 1.19474 0.79679 0.86882 0.83000 1.90675 1.58475 1.16525 1.75518 1.19479 0.99830 0.87405 0.96464 1.27827 0.93373 0.93470 0.93411 1.81225 1.09041 1.11402 1.07871 1.23100 0.96003 1.03952 0.91143 1.22590 0.96743 0.99546 0.94639 1.21698 1.01713 0.98797 0.97545 1.23020 0.98658 1.00448 0.91377 0.95060 0.96763 0.88659 0.92579 0.93280 0.90255 0.92981 0.87509 0.90060 0.89017 0.91966 0.92541 0.92230 0.90442 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.95 37.16 0.33 -3.08 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.35 8.37 -34.44 -0.29 -14.63 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.58 -12.24 2.75 -175.26 -0.48 -12.73 16 13 C 0.08 1.45 8.25 59.85 0.49 1.94 16 14 C 0.53 10.36 6.83 -10.98 -0.07 10.28 16 15 O -0.53 -12.22 15.23 5.56 0.08 -12.14 16 16 C -0.02 -0.36 0.66 -157.63 -0.10 -0.46 16 17 C 0.24 3.74 11.08 -20.75 -0.23 3.51 16 18 N -0.42 -7.25 18.42 42.17 0.78 -6.47 16 19 C -0.10 -1.12 6.04 -25.92 -0.16 -1.27 16 20 C -0.12 -1.10 4.07 -89.79 -0.37 -1.46 16 21 C -0.14 -1.08 9.71 37.16 0.36 -0.72 16 22 C -0.10 -1.16 6.54 -25.90 -0.17 -1.33 16 23 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 0.93 7.69 -51.93 -0.40 0.53 16 28 H 0.08 1.38 6.43 -51.93 -0.33 1.05 16 29 H 0.05 0.75 5.13 -51.93 -0.27 0.49 16 30 H 0.11 1.13 7.91 -51.93 -0.41 0.72 16 31 H 0.08 0.78 7.63 -51.93 -0.40 0.38 16 32 H 0.09 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.12 1.45 7.39 -51.93 -0.38 1.07 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -30.43 303.38 -5.19 -35.62 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.27 Total: -1.67 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.48 Total: 0.76 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.92 Total: -43.42 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.43 -5.19 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156950449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.702 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds