Wall clock time and date at job start Mon Mar 30 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00469 * 2 1 4 4 H 1.48491 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46846 * 300.00379 * 3 2 1 6 6 H 1.48495 * 109.46985 * 59.99826 * 3 2 1 7 7 C 1.37879 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00011 * 359.97438 * 7 2 1 10 10 H 1.09001 * 108.97827 * 58.83836 * 9 7 2 11 11 C 1.50780 * 108.99249 * 177.59683 * 9 7 2 12 12 N 1.47684 * 108.09717 * 215.23797 * 11 9 7 13 13 C 1.46904 * 111.00055 * 151.98627 * 12 11 9 14 14 C 1.50704 * 109.46815 * 194.68531 * 13 12 11 15 15 C 1.34512 * 125.78422 * 89.72025 * 14 13 12 16 16 C 1.41390 * 106.83781 * 179.88637 * 15 14 13 17 17 C 1.34507 * 106.83974 * 0.37069 * 16 15 14 18 18 O 1.34298 * 125.79002 * 270.02439 * 14 13 12 19 19 C 1.40085 * 114.57017 * 278.68717 * 12 11 9 20 20 C 1.54508 * 111.51044 * 61.45007 * 19 12 11 21 21 C 1.50742 * 108.94546 * 283.99255 * 20 19 12 22 22 N 1.47743 * 108.99379 * 299.99909 * 9 7 2 23 23 H 0.97003 * 119.99675 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.73876 * 95.58601 * 11 9 7 25 25 H 1.09004 * 109.73676 * 334.88674 * 11 9 7 26 26 H 1.08991 * 109.47276 * 314.68782 * 13 12 11 27 27 H 1.08995 * 109.46630 * 74.68878 * 13 12 11 28 28 H 1.08001 * 126.58621 * 0.02562 * 15 14 13 29 29 H 1.08003 * 126.57794 * 180.12393 * 16 15 14 30 30 H 1.08003 * 125.79062 * 179.74745 * 17 16 15 31 31 H 1.08996 * 109.06981 * 181.97269 * 19 12 11 32 32 H 1.08997 * 109.06839 * 300.92697 * 19 12 11 33 33 H 1.09006 * 109.56079 * 43.82630 * 20 19 12 34 34 H 1.09002 * 109.56237 * 164.04285 * 20 19 12 35 35 H 1.09000 * 108.79211 * 213.54454 * 21 20 19 36 36 H 1.09008 * 108.78524 * 331.75494 * 21 20 19 37 37 H 1.00899 * 111.00083 * 72.18184 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6114 -2.5392 -0.8823 11 6 2.2390 -3.6364 -0.0610 12 7 1.6450 -4.7177 -0.8727 13 6 2.6883 -5.5191 -1.5264 14 6 2.0681 -6.3635 -2.6097 15 6 1.9049 -5.9994 -3.8943 16 6 1.2894 -7.0883 -4.5536 17 6 1.1059 -8.0494 -3.6306 18 8 1.5794 -7.6048 -2.4550 19 6 0.7423 -5.5361 -0.1817 20 6 -0.4687 -4.7303 0.3393 21 6 -0.0445 -3.9358 1.5480 22 7 0.4060 -2.5666 1.2096 23 1 -0.4850 0.8401 0.0004 24 1 2.4424 -4.0012 0.9459 25 1 3.1652 -3.2951 -0.5236 26 1 3.4344 -4.8564 -1.9647 27 1 3.1647 -6.1658 -0.7896 28 1 2.1912 -5.0572 -4.3377 29 1 1.0153 -7.1373 -5.5971 30 1 0.6540 -9.0147 -3.8051 31 1 0.3874 -6.3196 -0.8512 32 1 1.2541 -5.9964 0.6635 33 1 -0.8177 -4.0518 -0.4392 34 1 -1.2716 -5.4146 0.6138 35 1 -0.8864 -3.8682 2.2370 36 1 0.7713 -4.4611 2.0448 37 1 -0.3778 -1.9351 1.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221354416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:44 Heat of formation + Delta-G solvation = 33.131495 kcal Electronic energy + Delta-G solvation = -18839.646093 eV Core-core repulsion = 16004.946863 eV Total energy + Delta-G solvation = -2834.699231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.40937 -38.74307 -34.77160 -32.96970 -32.69679 -30.76669 -30.32242 -27.11619 -25.32233 -25.02259 -22.78762 -21.59083 -20.51267 -19.95946 -18.90396 -17.24802 -16.68181 -15.98011 -15.24111 -14.90542 -14.53631 -14.40373 -14.29960 -13.83459 -12.88844 -12.67480 -12.60426 -12.49695 -12.26585 -11.92421 -11.63544 -11.40829 -11.03218 -10.88134 -10.55122 -10.41193 -10.28019 -9.97127 -9.73925 -9.57852 -9.12843 -8.45719 -8.34454 -7.67325 -6.68851 -6.00985 -4.01473 1.86705 2.78399 3.13955 3.33565 3.41575 3.44918 4.41956 4.58468 4.84141 5.14092 5.18562 5.22633 5.37527 5.48766 5.61234 5.70042 5.77876 5.94651 6.00510 6.10221 6.13014 6.23389 6.26895 6.34169 6.51690 6.53813 6.60378 6.66559 6.88112 6.97460 7.30431 7.41905 7.74455 7.87312 8.02156 8.31888 8.73692 9.11009 9.14849 9.65054 11.11116 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.005960 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.214392 B = 4696.695952 C = 5236.486282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.220 3.780 10 H 0.016 0.984 11 C 0.077 3.923 12 N -0.551 5.551 13 C 0.139 3.861 14 C 0.003 3.997 15 C -0.196 4.196 16 C -0.213 4.213 17 C -0.053 4.053 18 O -0.180 6.180 19 C 0.081 3.919 20 C -0.148 4.148 21 C 0.055 3.945 22 N -0.688 5.688 23 H 0.261 0.739 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.043 0.957 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.197 0.803 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -13.247 -4.629 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.113 3.887 10 H 0.034 0.966 11 C -0.048 4.048 12 N -0.276 5.276 13 C 0.012 3.988 14 C -0.048 4.048 15 C -0.216 4.216 16 C -0.232 4.232 17 C -0.121 4.121 18 O -0.077 6.077 19 C -0.049 4.049 20 C -0.188 4.188 21 C -0.076 4.076 22 N -0.323 5.323 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.214 0.786 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.896 -13.093 -4.264 13.900 hybrid contribution -0.046 0.361 -0.367 0.517 sum 1.850 -12.733 -4.630 13.674 Atomic orbital electron populations 1.69729 1.06027 1.26569 1.51202 1.24934 0.94807 0.99069 0.94317 0.86503 0.80056 0.83735 0.77371 1.19878 1.21261 1.21092 1.21211 0.92634 0.90242 1.50009 0.92466 1.18767 0.90547 0.91215 0.88144 0.96628 1.22167 0.98434 0.90459 0.93730 1.59114 1.17179 1.14056 1.37207 1.20531 0.92828 0.93022 0.92460 1.22506 1.01851 0.83676 0.96735 1.21590 1.05694 1.00697 0.93607 1.21821 1.05963 0.94667 1.00769 1.23911 1.04391 1.00853 0.82945 1.84022 1.60378 1.28961 1.34317 1.20958 0.93758 0.94603 0.95559 1.22145 0.96524 0.99526 1.00560 1.21795 0.97868 0.92634 0.95266 1.60916 1.25940 1.03728 1.41729 0.92956 0.94610 0.90835 0.87761 0.93867 0.83394 0.83793 0.78595 0.92208 0.96932 0.90742 0.92576 0.93580 0.93556 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 11.65 55.43 0.65 -24.61 16 2 C 0.07 1.93 5.38 -17.82 -0.10 1.84 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -13.63 8.60 -34.44 -0.30 -13.92 16 8 H 0.06 1.52 7.46 -52.48 -0.39 1.13 16 9 C 0.22 5.48 1.97 -69.52 -0.14 5.34 16 10 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 11 C 0.08 1.62 4.88 -4.51 -0.02 1.60 16 12 N -0.55 -10.26 3.98 -241.15 -0.96 -11.22 16 13 C 0.14 2.16 5.50 -4.97 -0.03 2.14 16 14 C 0.00 0.04 5.83 -35.62 -0.21 -0.17 16 15 C -0.20 -2.88 10.81 -39.70 -0.43 -3.31 16 16 C -0.21 -2.70 10.91 -39.70 -0.43 -3.13 16 17 C -0.05 -0.64 12.09 29.41 0.36 -0.29 16 18 O -0.18 -2.67 9.80 5.70 0.06 -2.61 16 19 C 0.08 1.44 4.83 -6.55 -0.03 1.40 16 20 C -0.15 -2.74 5.68 -27.07 -0.15 -2.89 16 21 C 0.05 1.09 6.00 -4.31 -0.03 1.07 16 22 N -0.69 -16.60 6.40 -108.89 -0.70 -17.30 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.04 0.75 6.77 -51.93 -0.35 0.40 16 25 H 0.07 1.49 6.92 -51.93 -0.36 1.13 16 26 H 0.10 1.50 7.68 -51.93 -0.40 1.10 16 27 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.20 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.06 1.04 6.20 -51.93 -0.32 0.72 16 32 H 0.01 0.22 7.60 -51.93 -0.39 -0.17 16 33 H 0.07 1.58 7.19 -51.93 -0.37 1.21 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.91 6.52 -51.92 -0.34 0.57 16 37 H 0.36 9.30 7.15 -39.29 -0.28 9.02 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -29.07 292.72 -8.32 -37.39 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.25 Total: 8.04 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.50 Total: -10.32 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -1.01 Total: -53.13 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.06 Total: -2.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.07 -8.32 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221354416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds