Wall clock time and date at job start Mon Mar 30 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46981 * 270.00366 * 3 2 1 5 5 H 1.48497 * 109.47106 * 30.00356 * 3 2 1 6 6 H 1.48504 * 109.47372 * 150.00589 * 3 2 1 7 7 C 1.37875 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46710 * 180.02562 * 9 7 2 11 11 N 1.30251 * 125.61827 * 90.34637 * 10 9 7 12 12 C 1.34480 * 108.69978 * 180.14488 * 11 10 9 13 13 C 1.34333 * 107.66662 * 359.55233 * 12 11 10 14 14 C 1.50697 * 126.44380 * 180.24083 * 13 12 11 15 15 C 1.52998 * 109.46841 * 90.00460 * 14 13 12 16 16 N 1.46907 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.48529 * 110.99621 * 52.60851 * 16 15 14 18 18 C 1.54938 * 103.22884 * 159.71994 * 17 16 15 19 19 C 1.54595 * 102.91777 * 322.58598 * 18 17 16 20 20 C 1.47904 * 110.99894 * 170.00019 * 16 15 14 21 21 O 1.33964 * 125.61547 * 269.99175 * 10 9 7 22 22 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47379 * 59.99872 * 9 7 2 24 24 H 1.09004 * 109.46753 * 299.99479 * 9 7 2 25 25 H 1.08002 * 126.17050 * 179.82616 * 12 11 10 26 26 H 1.08997 * 109.47389 * 210.00764 * 14 13 12 27 27 H 1.08997 * 109.47344 * 330.00999 * 14 13 12 28 28 H 1.08997 * 109.47377 * 300.00311 * 15 14 13 29 29 H 1.09009 * 109.47129 * 60.00648 * 15 14 13 30 30 H 1.09001 * 110.66502 * 278.15561 * 17 16 15 31 31 H 1.09001 * 110.67160 * 41.28759 * 17 16 15 32 32 H 1.08999 * 110.72534 * 204.22731 * 18 17 16 33 33 H 1.08997 * 110.72225 * 80.93654 * 18 17 16 34 34 H 1.08998 * 110.30770 * 263.03833 * 19 18 17 35 35 H 1.09008 * 110.31101 * 140.87265 * 19 18 17 36 36 H 1.08998 * 109.91821 * 333.51447 * 20 16 15 37 37 H 1.09000 * 109.91571 * 94.60831 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 7 2.7186 -4.2252 1.0583 12 6 3.5590 -5.1994 0.6670 13 6 3.5706 -5.2127 -0.6763 14 6 4.3661 -6.1427 -1.5555 15 6 3.5391 -7.3950 -1.8533 16 7 4.3144 -8.3014 -2.7109 17 6 5.6532 -8.5712 -2.1271 18 6 6.0879 -9.8827 -2.8281 19 6 4.7654 -10.6774 -2.9253 20 6 3.6516 -9.6186 -2.8257 21 8 2.7374 -4.2376 -1.0896 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8898 25 1 4.1199 -5.8560 1.3156 26 1 4.6111 -5.6383 -2.4902 27 1 5.2858 -6.4277 -1.0447 28 1 3.2941 -7.8994 -0.9186 29 1 2.6193 -7.1100 -2.3643 30 1 6.3451 -7.7622 -2.3614 31 1 5.5807 -8.7169 -1.0493 32 1 6.8173 -10.4204 -2.2224 33 1 6.4871 -9.6754 -3.8210 34 1 4.6884 -11.3861 -2.1008 35 1 4.7068 -11.1993 -3.8806 36 1 3.0401 -9.8048 -1.9428 37 1 3.0294 -9.6446 -3.7203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:38 Heat of formation + Delta-G solvation = 11.029275 kcal Electronic energy + Delta-G solvation = -17616.144666 eV Core-core repulsion = 14780.487011 eV Total energy + Delta-G solvation = -2835.657655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.52762 -39.18698 -34.39016 -33.95997 -33.28075 -31.11185 -29.53216 -28.96316 -26.34474 -23.88851 -22.99267 -21.62984 -21.04875 -20.63842 -20.00876 -16.79524 -16.48933 -16.25144 -15.86579 -15.36783 -14.92686 -14.60741 -14.24323 -13.88339 -13.16951 -13.07701 -12.71641 -12.58620 -12.25191 -11.87025 -11.67679 -11.61384 -11.47551 -11.35787 -11.07971 -10.89354 -10.82453 -10.76030 -10.53458 -10.05607 -9.68365 -9.59688 -8.64175 -8.54032 -7.90512 -6.16207 -4.20960 2.16393 3.28175 3.32699 3.35092 3.40688 3.52375 3.86039 4.37403 4.38453 4.43032 4.68968 4.92207 5.01303 5.04978 5.06801 5.20248 5.24385 5.29395 5.38724 5.49962 5.54338 5.57667 5.61222 5.70422 5.77086 5.88651 5.88915 5.95498 6.52491 6.66433 6.71151 6.81079 7.04873 7.29063 7.29757 7.78066 8.05926 8.64837 8.79666 9.42902 10.94061 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050761 B = 0.003570 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.475122 B = 7840.454427 C = 7922.630011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.103 3.897 10 C 0.253 3.747 11 N -0.511 5.511 12 C -0.037 4.037 13 C -0.090 4.090 14 C -0.023 4.023 15 C 0.050 3.950 16 N -0.518 5.518 17 C 0.028 3.972 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.034 3.966 21 O -0.202 6.202 22 H 0.266 0.734 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.169 0.831 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -18.988 -5.258 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.066 3.934 10 C 0.047 3.953 11 N -0.240 5.240 12 C -0.176 4.176 13 C -0.144 4.144 14 C -0.061 4.061 15 C -0.078 4.078 16 N -0.242 5.242 17 C -0.099 4.099 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.094 4.094 21 O -0.090 6.090 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.186 0.814 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.261 -18.434 -5.178 21.270 hybrid contribution 0.536 0.280 0.256 0.657 sum 9.797 -18.155 -4.922 21.209 Atomic orbital electron populations 1.69931 1.06032 1.27396 1.49555 1.24946 0.94986 0.99415 0.94609 0.86375 0.79771 0.82371 0.78281 1.20383 1.20905 1.19684 1.20871 0.93254 0.89165 1.52504 0.92176 1.18072 0.89977 0.84908 1.00481 1.27805 0.95579 0.94814 0.77107 1.70547 1.13035 1.09618 1.30759 1.22945 1.01811 1.00141 0.92658 1.22927 1.00594 0.95816 0.95078 1.19895 0.95688 0.91770 0.98762 1.22346 0.97300 0.92751 0.95367 1.64831 1.02770 1.10356 1.46245 1.23308 0.91670 0.97851 0.97114 1.22485 0.96969 0.95436 1.01341 1.22399 0.94664 0.97634 1.02245 1.22879 0.96671 0.88261 1.01555 1.84449 1.47194 1.38531 1.38838 0.92421 0.93279 0.91670 0.81399 0.89434 0.89371 0.94108 0.90011 0.89678 0.93502 0.91110 0.90684 0.91581 0.91006 0.93656 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.78 9.09 -34.44 -0.31 -15.09 16 8 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 9 C 0.10 2.73 5.60 -29.03 -0.16 2.57 16 10 C 0.25 6.11 7.53 -12.95 -0.10 6.01 16 11 N -0.51 -11.89 11.29 -11.10 -0.13 -12.01 16 12 C -0.04 -0.69 11.80 -17.77 -0.21 -0.90 16 13 C -0.09 -1.62 6.64 -35.69 -0.24 -1.86 16 14 C -0.02 -0.30 5.42 -27.89 -0.15 -0.46 16 15 C 0.05 0.61 5.01 -3.82 -0.02 0.59 16 16 N -0.52 -5.52 5.40 -230.45 -1.24 -6.77 16 17 C 0.03 0.25 5.10 -1.90 -0.01 0.24 16 18 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 19 C -0.13 -0.96 6.93 -25.38 -0.18 -1.13 16 20 C 0.03 0.31 6.70 -2.76 -0.02 0.29 16 21 O -0.20 -4.47 10.78 5.36 0.06 -4.41 16 22 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 25 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 0.96 6.80 -51.93 -0.35 0.61 16 28 H 0.04 0.48 7.81 -51.93 -0.41 0.08 16 29 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.08 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.05 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -30.82 309.18 -8.34 -39.16 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.73 Total: -2.87 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.67 Total: -9.15 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.63 Total: -43.88 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: 0.06 Total: -4.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.82 -8.34 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.187 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds