Wall clock time and date at job start Mon Mar 30 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46981 * 270.00366 * 3 2 1 5 5 H 1.48497 * 109.47106 * 30.00356 * 3 2 1 6 6 H 1.48504 * 109.47372 * 150.00589 * 3 2 1 7 7 C 1.37875 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46710 * 180.02562 * 9 7 2 11 11 N 1.30251 * 125.61827 * 90.34637 * 10 9 7 12 12 C 1.34480 * 108.69978 * 180.14488 * 11 10 9 13 13 C 1.34333 * 107.66662 * 359.55233 * 12 11 10 14 14 C 1.50697 * 126.44380 * 180.24083 * 13 12 11 15 15 C 1.52998 * 109.46841 * 90.00460 * 14 13 12 16 16 N 1.46907 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.48529 * 110.99621 * 52.60851 * 16 15 14 18 18 C 1.54938 * 103.22884 * 159.71994 * 17 16 15 19 19 C 1.54595 * 102.91777 * 322.58598 * 18 17 16 20 20 C 1.47904 * 110.99894 * 170.00019 * 16 15 14 21 21 O 1.33964 * 125.61547 * 269.99175 * 10 9 7 22 22 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47379 * 59.99872 * 9 7 2 24 24 H 1.09004 * 109.46753 * 299.99479 * 9 7 2 25 25 H 1.08002 * 126.17050 * 179.82616 * 12 11 10 26 26 H 1.08997 * 109.47389 * 210.00764 * 14 13 12 27 27 H 1.08997 * 109.47344 * 330.00999 * 14 13 12 28 28 H 1.08997 * 109.47377 * 300.00311 * 15 14 13 29 29 H 1.09009 * 109.47129 * 60.00648 * 15 14 13 30 30 H 1.09001 * 110.66502 * 278.15561 * 17 16 15 31 31 H 1.09001 * 110.67160 * 41.28759 * 17 16 15 32 32 H 1.08999 * 110.72534 * 204.22731 * 18 17 16 33 33 H 1.08997 * 110.72225 * 80.93654 * 18 17 16 34 34 H 1.08998 * 110.30770 * 263.03833 * 19 18 17 35 35 H 1.09008 * 110.31101 * 140.87265 * 19 18 17 36 36 H 1.08998 * 109.91821 * 333.51447 * 20 16 15 37 37 H 1.09000 * 109.91571 * 94.60831 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 7 2.7186 -4.2252 1.0583 12 6 3.5590 -5.1994 0.6670 13 6 3.5706 -5.2127 -0.6763 14 6 4.3661 -6.1427 -1.5555 15 6 3.5391 -7.3950 -1.8533 16 7 4.3144 -8.3014 -2.7109 17 6 5.6532 -8.5712 -2.1271 18 6 6.0879 -9.8827 -2.8281 19 6 4.7654 -10.6774 -2.9253 20 6 3.6516 -9.6186 -2.8257 21 8 2.7374 -4.2376 -1.0896 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8898 25 1 4.1199 -5.8560 1.3156 26 1 4.6111 -5.6383 -2.4902 27 1 5.2858 -6.4277 -1.0447 28 1 3.2941 -7.8994 -0.9186 29 1 2.6193 -7.1100 -2.3643 30 1 6.3451 -7.7622 -2.3614 31 1 5.5807 -8.7169 -1.0493 32 1 6.8173 -10.4204 -2.2224 33 1 6.4871 -9.6754 -3.8210 34 1 4.6884 -11.3861 -2.1008 35 1 4.7068 -11.1993 -3.8806 36 1 3.0401 -9.8048 -1.9428 37 1 3.0294 -9.6446 -3.7203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:38 Heat of formation + Delta-G solvation = -10.809756 kcal Electronic energy + Delta-G solvation = -17617.091677 eV Core-core repulsion = 14780.487011 eV Total energy + Delta-G solvation = -2836.604666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.20246 -39.93232 -35.90321 -35.52899 -35.03994 -32.56925 -30.92798 -29.75591 -27.84779 -25.60200 -24.31249 -23.04074 -22.00041 -21.72152 -21.28513 -18.81680 -17.87393 -17.47887 -16.99172 -16.75231 -16.49927 -15.81399 -15.42371 -14.86665 -14.64826 -14.38053 -14.08833 -13.83128 -13.60996 -13.56732 -12.85975 -12.79068 -12.63861 -12.48840 -12.29761 -12.26961 -12.11948 -12.06289 -11.88096 -11.65564 -11.40981 -11.36830 -10.69286 -9.52084 -9.42531 -8.30496 -6.45141 0.55731 1.40239 1.42051 1.53352 1.79815 1.85622 2.38611 2.97872 3.02426 3.43158 3.67278 3.76999 3.86982 4.01227 4.09769 4.17519 4.19972 4.38512 4.45282 4.57593 4.65347 4.75314 4.89015 4.94166 4.99336 5.00078 5.07148 5.09305 5.14674 5.20729 5.27385 5.33361 5.45343 5.58673 5.92229 5.92495 5.98858 6.59867 6.94354 7.23350 8.79858 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050761 B = 0.003570 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.475122 B = 7840.454427 C = 7922.630011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.113 3.887 10 C 0.219 3.781 11 N -0.527 5.527 12 C -0.050 4.050 13 C -0.071 4.071 14 C -0.017 4.017 15 C 0.058 3.942 16 N -0.530 5.530 17 C 0.022 3.978 18 C -0.121 4.121 19 C -0.128 4.128 20 C 0.029 3.971 21 O -0.217 6.217 22 H 0.272 0.728 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.210 0.790 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 -20.001 -5.444 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.075 3.925 10 C 0.013 3.987 11 N -0.256 5.256 12 C -0.188 4.188 13 C -0.125 4.125 14 C -0.054 4.054 15 C -0.070 4.070 16 N -0.254 5.254 17 C -0.105 4.105 18 C -0.159 4.159 19 C -0.166 4.166 20 C -0.098 4.098 21 O -0.105 6.105 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.227 0.773 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.390 -19.468 -5.381 23.188 hybrid contribution -0.086 0.447 0.284 0.537 sum 11.304 -19.020 -5.097 22.706 Atomic orbital electron populations 1.70028 1.07487 1.28716 1.49703 1.25860 0.95915 1.03028 0.93702 0.85303 0.78372 0.77704 0.78816 1.19225 1.19765 1.19432 1.21107 0.93019 0.90592 1.53417 0.93049 1.17672 0.90232 0.85833 0.98761 1.27116 0.97457 0.96028 0.78107 1.70468 1.13666 1.10591 1.30922 1.23576 1.01674 0.99870 0.93636 1.23892 0.98434 0.94208 0.95928 1.20113 0.96074 0.90993 0.98233 1.22160 0.96609 0.92624 0.95601 1.64820 1.03563 1.10973 1.46070 1.23427 0.90599 0.98883 0.97577 1.22493 0.97225 0.94742 1.01448 1.22402 0.93841 0.97209 1.03149 1.22952 0.97361 0.88176 1.01355 1.84421 1.47938 1.39538 1.38582 0.91866 0.94718 0.93707 0.77294 0.89443 0.86198 0.93749 0.91889 0.89285 0.92925 0.89480 0.90782 0.90603 0.90218 0.93816 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.29 21.45 0.28 -54.02 16 2 C 0.01 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -31.79 9.09 25.60 0.23 -31.56 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.11 6.26 5.60 29.11 0.16 6.42 16 10 C 0.22 10.89 7.53 88.35 0.67 11.55 16 11 N -0.53 -24.62 11.29 -303.82 -3.43 -28.06 16 12 C -0.05 -1.79 11.80 83.39 0.98 -0.80 16 13 C -0.07 -2.48 6.64 24.79 0.16 -2.32 16 14 C -0.02 -0.40 5.42 29.85 0.16 -0.23 16 15 C 0.06 1.31 5.01 86.30 0.43 1.74 16 16 N -0.53 -10.26 5.40 -883.01 -4.77 -15.02 16 17 C 0.02 0.33 5.10 86.65 0.44 0.77 16 18 C -0.12 -1.42 7.06 31.80 0.22 -1.19 16 19 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 20 C 0.03 0.48 6.70 86.44 0.58 1.06 16 21 O -0.22 -9.74 10.78 -3.73 -0.04 -9.78 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.04 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.21 5.52 8.06 -2.91 -0.02 5.50 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.12 2.17 6.80 -2.39 -0.02 2.15 16 28 H 0.04 0.96 7.81 -2.39 -0.02 0.94 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.09 1.24 7.66 -2.39 -0.02 1.22 16 31 H 0.05 0.73 8.00 -2.39 -0.02 0.71 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.04 0.73 7.57 -2.39 -0.02 0.71 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.30 309.18 -0.16 -67.46 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.04 Total: 7.80 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 4.73 Total: -14.56 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -7.91 Total: -97.10 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.04 Total: -9.78 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -67.30 -0.16 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.646 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds