Wall clock time and date at job start Mon Mar 30 2020 03:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48495 * 109.47023 * 92.66392 * 3 2 1 5 5 H 1.48502 * 109.46901 * 212.66665 * 3 2 1 6 6 H 1.48502 * 109.46901 * 332.66729 * 3 2 1 7 7 C 1.37882 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99338 * 337.90011 * 7 2 1 9 9 C 1.50699 * 120.00287 * 157.90264 * 7 2 1 10 10 C 1.53006 * 109.29608 * 305.43903 * 9 7 2 11 11 N 1.46899 * 109.46971 * 177.41578 * 10 9 7 12 12 C 1.52852 * 109.29980 * 64.81199 * 9 7 2 13 13 C 1.53432 * 108.84355 * 68.96256 * 12 9 7 14 14 N 1.46921 * 107.80141 * 63.19039 * 13 12 9 15 15 C 1.39918 * 118.92525 * 315.34488 * 14 13 12 16 16 C 1.39035 * 119.10885 * 193.25890 * 15 14 13 17 17 C 1.38239 * 120.01726 * 180.40005 * 16 15 14 18 18 F 1.35101 * 120.07479 * 180.02562 * 17 16 15 19 19 C 1.38541 * 119.85658 * 359.97438 * 17 16 15 20 20 C 1.38090 * 120.13180 * 359.90753 * 19 17 16 21 21 C 1.38520 * 120.33955 * 0.03773 * 20 19 17 22 22 H 0.97000 * 119.99547 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46684 * 297.40913 * 10 9 7 24 24 H 1.08995 * 109.47231 * 57.41044 * 10 9 7 25 25 H 1.00897 * 111.00028 * 179.33482 * 11 10 9 26 26 H 1.00908 * 110.99903 * 303.29221 * 11 10 9 27 27 H 1.08993 * 109.57516 * 188.76688 * 12 9 7 28 28 H 1.09000 * 109.57987 * 309.15695 * 12 9 7 29 29 H 1.09007 * 109.77934 * 303.62222 * 13 12 9 30 30 H 1.08995 * 109.84852 * 182.80246 * 13 12 9 31 31 H 0.96997 * 120.53810 * 135.31991 * 14 13 12 32 32 H 1.08001 * 119.99291 * 0.41003 * 16 15 14 33 33 H 1.07995 * 119.93669 * 179.97438 * 19 17 16 34 34 H 1.07995 * 119.82989 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5530 2.0139 1.3985 5 1 3.5174 1.4571 -0.7557 6 1 1.4195 2.6683 -0.6429 7 6 2.0046 -1.1941 -0.0005 8 1 1.5240 -2.0952 0.3510 9 6 3.4286 -1.2418 -0.4915 10 6 3.4964 -0.6566 -1.9036 11 7 4.8920 -0.6444 -2.3620 12 6 4.3117 -0.4101 0.4384 13 6 4.4085 -1.1194 1.7955 14 7 5.0712 -2.4128 1.5800 15 6 4.6796 -3.2009 0.4922 16 6 5.0909 -4.5278 0.4355 17 6 4.7218 -5.3211 -0.6347 18 9 5.1204 -6.6108 -0.6907 19 6 3.9414 -4.7911 -1.6493 20 6 3.5308 -3.4739 -1.5919 21 6 3.8958 -2.6732 -0.5221 22 1 -0.4849 0.8401 -0.0004 23 1 2.8975 -1.2675 -2.5791 24 1 3.1081 0.3618 -1.8939 25 1 4.9622 -0.2720 -3.2971 26 1 5.4781 -0.1288 -1.7225 27 1 5.3073 -0.3123 0.0057 28 1 3.8714 0.5779 0.5733 29 1 3.4091 -1.2795 2.2001 30 1 4.9946 -0.5151 2.4879 31 1 5.7690 -2.7154 2.1819 32 1 5.6987 -4.9390 1.2279 33 1 3.6527 -5.4095 -2.4862 34 1 2.9223 -3.0659 -2.3853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:28 Heat of formation + Delta-G solvation = 6.413781 kcal Electronic energy + Delta-G solvation = -19057.359210 eV Core-core repulsion = 16098.041108 eV Total energy + Delta-G solvation = -2959.318103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.30148 -39.68999 -36.19920 -34.87905 -32.45735 -31.09860 -29.49682 -28.93922 -26.18166 -23.69648 -23.04253 -22.41559 -20.83591 -18.95820 -17.35432 -16.55639 -16.12581 -15.72521 -15.20336 -14.98509 -14.78715 -14.21064 -13.92478 -13.69416 -13.37809 -13.01128 -12.58423 -12.43064 -12.26657 -11.95004 -11.72611 -11.50230 -10.89473 -10.69568 -10.58700 -10.24769 -9.60895 -9.52725 -9.32004 -8.96679 -8.47677 -7.87891 -7.81269 -6.72817 -6.27105 -4.18556 2.02031 2.18692 3.10352 3.17437 3.27797 3.98485 4.24106 4.48535 4.96337 5.03300 5.33212 5.44813 5.61165 5.64200 5.73196 5.83472 6.00689 6.11147 6.23270 6.25572 6.41352 6.54999 6.61521 6.73914 6.77921 6.87470 6.99909 7.13238 7.41460 7.54359 7.58417 7.83110 7.91359 8.03276 8.33581 8.41331 8.86827 9.39183 10.85018 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.008616 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.200775 B = 3249.156263 C = 3390.557672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.868 3.132 4 H -0.282 1.282 5 H -0.252 1.252 6 H -0.301 1.301 7 C -0.511 4.511 8 H 0.077 0.923 9 C 0.095 3.905 10 C 0.063 3.937 11 N -0.850 5.850 12 C -0.137 4.137 13 C 0.131 3.869 14 N -0.750 5.750 15 C 0.234 3.766 16 C -0.237 4.237 17 C 0.109 3.891 18 F -0.154 7.154 19 C -0.210 4.210 20 C -0.037 4.037 21 C -0.074 4.074 22 H 0.265 0.735 23 H 0.070 0.930 24 H 0.028 0.972 25 H 0.324 0.676 26 H 0.330 0.670 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.392 0.608 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -1.833 -0.334 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.699 3.301 4 H -0.209 1.209 5 H -0.178 1.178 6 H -0.229 1.229 7 C -0.549 4.549 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.067 4.067 11 N -0.379 5.379 12 C -0.176 4.176 13 C 0.007 3.993 14 N -0.380 5.380 15 C 0.131 3.869 16 C -0.261 4.261 17 C 0.090 3.910 18 F -0.133 7.133 19 C -0.231 4.231 20 C -0.056 4.056 21 C -0.079 4.079 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.316 -2.388 -0.225 9.620 hybrid contribution 0.537 1.695 0.302 1.803 sum 9.853 -0.693 0.077 9.878 Atomic orbital electron populations 1.70043 1.06439 1.27171 1.47517 1.24977 0.94334 0.98795 0.94185 0.87591 0.80002 0.84198 0.78297 1.20943 1.17849 1.22941 1.20755 0.93855 0.96300 1.43990 0.90536 1.17289 0.94948 0.87491 0.90905 1.22507 0.87369 0.98943 0.97886 1.58989 1.10614 1.62512 1.05799 1.22457 0.99182 0.99039 0.96877 1.21520 0.97768 0.83071 0.96973 1.44586 1.43143 1.20633 1.29632 1.17254 0.93382 0.88559 0.87698 1.20303 1.11236 0.93540 1.01015 1.17212 0.99189 0.78066 0.96540 1.91404 1.89533 1.35745 1.96649 1.20724 1.05016 0.97271 1.00074 1.20664 0.96197 0.91460 0.97234 1.19330 0.98796 0.96978 0.92767 0.92507 0.91181 0.95451 0.86495 0.85691 0.93093 0.92423 0.90731 0.92143 0.77412 0.86306 0.86307 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 13.96 55.43 0.77 -24.18 16 2 C 0.08 2.13 5.22 -17.82 -0.09 2.04 16 3 Si 0.87 19.65 23.09 -169.99 -3.92 15.72 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.25 -5.21 4.53 56.52 0.26 -4.95 16 6 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.51 -13.08 7.62 -34.44 -0.26 -13.34 16 8 H 0.08 2.22 7.98 -52.48 -0.42 1.80 16 9 C 0.10 2.03 0.23 -156.93 -0.04 2.00 16 10 C 0.06 1.26 4.74 -3.82 -0.02 1.24 16 11 N -0.85 -14.46 9.23 -10.37 -0.10 -14.56 16 12 C -0.14 -2.68 3.90 -26.58 -0.10 -2.78 16 13 C 0.13 2.32 7.01 -3.59 -0.03 2.29 16 14 N -0.75 -12.51 5.80 -58.09 -0.34 -12.85 16 15 C 0.23 4.45 6.47 -83.73 -0.54 3.91 16 16 C -0.24 -4.23 9.85 -39.29 -0.39 -4.62 16 17 C 0.11 2.00 7.30 -39.47 -0.29 1.71 16 18 F -0.15 -2.72 17.27 2.25 0.04 -2.68 16 19 C -0.21 -3.83 10.02 -39.52 -0.40 -4.23 16 20 C -0.04 -0.72 9.07 -39.53 -0.36 -1.08 16 21 C -0.07 -1.53 4.34 -104.42 -0.45 -1.99 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.07 1.44 6.30 -51.93 -0.33 1.11 16 24 H 0.03 0.58 4.04 -51.93 -0.21 0.37 16 25 H 0.32 4.74 9.08 -39.29 -0.36 4.38 16 26 H 0.33 5.44 6.80 -39.29 -0.27 5.17 16 27 H 0.05 0.92 6.12 -51.93 -0.32 0.61 16 28 H 0.06 1.18 2.45 -51.93 -0.13 1.05 16 29 H 0.07 1.50 7.39 -51.92 -0.38 1.12 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.39 5.31 8.86 -40.82 -0.36 4.95 16 32 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.13 2.44 6.28 -52.49 -0.33 2.11 16 LS Contribution 261.71 15.07 3.94 3.94 Total: -1.00 -27.99 261.71 -6.21 -34.20 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -3.65 Total: 15.25 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.96 Total: -14.85 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.34 Total: -51.59 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -3.92 Total: 15.72 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.99 -6.21 -34.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.615 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds