Wall clock time and date at job start Mon Mar 30 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30697 * 127.01433 * 2 1 4 4 O 1.21460 * 111.69053 * 180.02562 * 3 2 1 5 5 C 1.33165 * 111.27491 * 359.92193 * 4 3 2 6 6 C 1.35517 * 106.45358 * 0.14027 * 5 4 3 7 7 C 1.50079 * 124.85820 * 179.76608 * 6 5 4 8 8 C 1.50697 * 109.71871 * 103.56790 * 7 6 5 9 9 H 1.07998 * 119.99666 * 156.38779 * 8 7 6 10 10 C 1.37871 * 120.00097 * 336.38058 * 8 7 6 11 11 N 1.31512 * 120.00386 * 346.38640 * 10 8 7 12 12 Si 1.86807 * 119.99810 * 166.38586 * 10 8 7 13 13 H 1.48494 * 109.47311 * 90.00326 * 12 10 8 14 14 H 1.48503 * 109.47048 * 210.00363 * 12 10 8 15 15 H 1.48500 * 109.46986 * 329.99894 * 12 10 8 16 16 C 1.52996 * 109.69704 * 224.19586 * 7 6 5 17 17 N 1.46901 * 109.47311 * 59.90718 * 16 7 6 18 18 C 1.53541 * 108.23487 * 343.87441 * 7 6 5 19 19 H 1.09009 * 109.46214 * 289.26229 * 18 7 6 20 20 C 1.52997 * 109.46455 * 169.28083 * 18 7 6 21 21 C 1.53108 * 109.51885 * 49.26877 * 18 7 6 22 22 C 1.50555 * 129.73647 * 180.18061 * 5 4 3 23 23 H 1.08999 * 109.47202 * 95.51960 * 1 2 3 24 24 H 1.09001 * 109.46957 * 215.52047 * 1 2 3 25 25 H 1.09000 * 109.47316 * 335.52087 * 1 2 3 26 26 H 0.96999 * 120.00303 * 184.99860 * 11 10 8 27 27 H 1.09004 * 109.47616 * 179.90613 * 16 7 6 28 28 H 1.09005 * 109.47505 * 299.90766 * 16 7 6 29 29 H 1.00897 * 111.00169 * 180.97325 * 17 16 7 30 30 H 1.00895 * 111.00032 * 304.92723 * 17 16 7 31 31 H 1.09000 * 109.46953 * 299.98198 * 20 18 7 32 32 H 1.08999 * 109.47384 * 179.97438 * 20 18 7 33 33 H 1.09000 * 109.47102 * 59.97528 * 20 18 7 34 34 H 1.08995 * 109.43073 * 50.17856 * 21 18 7 35 35 H 1.09000 * 109.43022 * 170.02848 * 21 18 7 36 36 H 1.08997 * 109.69979 * 43.60640 * 22 5 4 37 37 H 1.08998 * 109.72988 * 283.03079 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2938 1.0436 0.0000 4 8 3.4652 0.7226 -0.0005 5 6 3.6033 -0.6019 0.0008 6 6 2.3504 -1.1184 -0.0010 7 6 2.0268 -2.5839 -0.0054 8 6 1.5919 -3.0127 1.3723 9 1 0.9728 -3.8891 1.4947 10 6 1.9845 -2.2863 2.4764 11 7 2.9422 -1.3915 2.3683 12 14 1.1561 -2.5731 4.1260 13 1 1.8874 -3.6297 4.8701 14 1 1.1701 -1.3136 4.9126 15 1 -0.2480 -3.0039 3.9064 16 6 0.9073 -2.8617 -1.0105 17 7 1.3419 -2.4531 -2.3530 18 6 3.2912 -3.3539 -0.4125 19 1 3.4963 -3.1826 -1.4693 20 6 3.0774 -4.8494 -0.1706 21 6 4.4781 -2.8666 0.4229 22 6 4.8546 -1.4391 0.0044 23 1 -0.3633 -0.0988 -1.0229 24 1 -0.3633 -0.8364 0.5971 25 1 -0.3634 0.9353 0.4258 26 1 3.2684 -0.9324 3.1581 27 1 0.6763 -3.9270 -1.0120 28 1 0.0180 -2.2975 -0.7292 29 1 0.6136 -2.6119 -3.0329 30 1 1.6383 -1.4887 -2.3592 31 1 2.8723 -5.0208 0.8861 32 1 3.9748 -5.3963 -0.4600 33 1 2.2327 -5.1966 -0.7655 34 1 4.2065 -2.8752 1.4784 35 1 5.3298 -3.5278 0.2630 36 1 5.5714 -1.0253 0.7136 37 1 5.2915 -1.4521 -0.9941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:38 Heat of formation + Delta-G solvation = 42.223779 kcal Electronic energy + Delta-G solvation = -20506.486575 eV Core-core repulsion = 17672.181616 eV Total energy + Delta-G solvation = -2834.304960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.21526 -39.70075 -35.56694 -34.53207 -34.00938 -32.58953 -30.63343 -29.34984 -28.24361 -25.98552 -25.10768 -22.95190 -22.33528 -20.79780 -19.86524 -18.01331 -17.96167 -17.12523 -16.55599 -16.15367 -15.63375 -15.33807 -14.59219 -14.33653 -14.14169 -14.08157 -13.96516 -13.77912 -13.45305 -13.11713 -12.88764 -12.66025 -12.54173 -12.46313 -12.14481 -11.89688 -11.69907 -11.47432 -10.96348 -10.69788 -10.63593 -10.30917 -10.10102 -9.35362 -9.21197 -7.65771 -5.99755 1.19625 1.38749 1.47361 1.50290 2.09539 2.48974 2.80657 3.27794 3.79601 4.06067 4.16610 4.40111 4.45935 4.50543 4.67086 4.72213 4.78228 4.86746 4.92953 4.99807 5.08859 5.10829 5.19330 5.25567 5.35305 5.46121 5.55104 5.58153 5.77307 5.83337 5.87078 5.97238 6.11572 6.22759 6.39319 6.57939 6.83498 7.02627 7.60468 7.90288 9.00757 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.014027 C = 0.012222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.285168 B = 1995.702719 C = 2290.416462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.006 3.994 3 N -0.429 5.429 4 O 0.061 5.939 5 C -0.015 4.015 6 C -0.098 4.098 7 C 0.138 3.862 8 C -0.507 4.507 9 H 0.053 0.947 10 C 0.046 3.954 11 N -0.871 5.871 12 Si 0.916 3.084 13 H -0.282 1.282 14 H -0.304 1.304 15 H -0.273 1.273 16 C 0.077 3.923 17 N -0.843 5.843 18 C -0.066 4.066 19 H 0.054 0.946 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.007 4.007 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.245 0.755 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.340 0.660 30 H 0.329 0.671 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -2.600 -6.236 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.149 4.149 3 N -0.144 5.144 4 O 0.003 5.997 5 C -0.080 4.080 6 C -0.103 4.103 7 C 0.136 3.864 8 C -0.546 4.546 9 H 0.071 0.929 10 C -0.155 4.155 11 N -0.508 5.508 12 Si 0.745 3.255 13 H -0.208 1.208 14 H -0.231 1.231 15 H -0.198 1.198 16 C -0.054 4.054 17 N -0.372 5.372 18 C -0.085 4.085 19 H 0.072 0.928 20 C -0.177 4.177 21 C -0.142 4.142 22 C -0.045 4.045 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.214 -1.680 -6.042 6.275 hybrid contribution -1.285 0.115 1.718 2.149 sum -1.072 -1.566 -4.324 4.722 Atomic orbital electron populations 1.20056 0.86575 1.02422 1.02673 1.23114 0.98574 0.89882 1.03358 1.73939 0.89600 1.25057 1.25853 1.84400 1.21693 1.24172 1.69442 1.23900 0.99741 0.81935 1.02390 1.20235 0.90491 0.97257 1.02313 1.16763 0.91860 0.85222 0.92508 1.20975 1.32047 1.10785 0.90762 0.92891 1.25231 0.95319 0.94996 0.99984 1.70410 1.26014 1.26712 1.27707 0.86225 0.79966 0.76382 0.82948 1.20819 1.23111 1.19830 1.21876 0.96368 0.99018 0.88091 1.58771 1.44188 1.27143 1.07122 1.21151 0.95108 0.95075 0.97148 0.92798 1.21577 0.99658 0.95563 1.00928 1.21650 0.97049 0.92477 1.03023 1.19907 0.90168 0.93336 1.01106 0.89812 0.90796 0.91972 0.94484 0.92113 0.96280 0.84809 0.85891 0.93663 0.93602 0.93789 0.90393 0.92394 0.91287 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.22 8.88 71.23 0.63 -1.58 16 2 C 0.01 0.27 7.04 43.17 0.30 0.57 16 3 N -0.43 -20.06 12.10 -48.63 -0.59 -20.65 16 4 O 0.06 2.82 11.20 78.86 0.88 3.70 16 5 C -0.02 -0.67 5.70 25.01 0.14 -0.52 16 6 C -0.10 -4.30 1.64 -20.24 -0.03 -4.33 16 7 C 0.14 5.72 0.35 -53.69 -0.02 5.70 16 8 C -0.51 -23.72 6.08 25.60 0.16 -23.57 16 9 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 10 C 0.05 2.26 4.60 84.65 0.39 2.65 16 11 N -0.87 -44.04 7.40 21.44 0.16 -43.89 16 12 Si 0.92 41.20 29.56 68.60 2.03 43.23 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 C 0.08 2.80 5.35 86.30 0.46 3.27 16 17 N -0.84 -26.59 8.65 -186.71 -1.62 -28.21 16 18 C -0.07 -2.54 1.88 -10.58 -0.02 -2.56 16 19 H 0.05 2.06 7.26 -2.38 -0.02 2.05 16 20 C -0.12 -4.29 8.62 71.98 0.62 -3.67 16 21 C -0.10 -4.07 4.87 30.78 0.15 -3.92 16 22 C -0.01 -0.27 6.15 29.95 0.18 -0.08 16 23 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 24 H 0.07 2.87 7.36 -2.39 -0.02 2.85 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.24 12.75 8.32 -92.71 -0.77 11.98 16 27 H 0.06 2.20 6.88 -2.38 -0.02 2.18 16 28 H 0.02 0.70 5.61 -2.38 -0.01 0.69 16 29 H 0.34 8.76 9.08 -89.70 -0.81 7.94 16 30 H 0.33 11.10 7.71 -89.70 -0.69 10.41 16 31 H 0.04 1.77 6.95 -2.39 -0.02 1.75 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.50 6.85 -2.39 -0.02 1.48 16 34 H 0.08 3.58 5.14 -2.39 -0.01 3.57 16 35 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -53.53 279.10 3.43 -50.10 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.41 Total: 23.76 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 2.97 Total: -28.05 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -2.05 Total: -92.74 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.88 Total: 3.70 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -53.53 3.43 -50.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.325 kcal (2) G-P(sol) polarization free energy of solvation -53.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds