Wall clock time and date at job start Mon Mar 30 2020 04:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34600 * 126.32059 * 2 1 4 4 C 1.34950 * 107.60776 * 179.97438 * 3 2 1 5 5 C 1.39792 * 125.79770 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99982 * 179.97438 * 5 4 3 7 7 C 1.40336 * 120.00376 * 359.97438 * 5 4 3 8 8 N 1.30632 * 119.99748 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00409 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46723 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46902 * 119.99747 * 9 7 5 12 12 H 1.48499 * 109.46959 * 240.00058 * 9 7 5 13 13 N 1.32818 * 108.39984 * 359.97438 * 4 3 2 14 14 C 1.33061 * 108.65176 * 359.76764 * 13 4 3 15 15 C 1.50706 * 126.00950 * 180.23288 * 14 13 4 16 16 H 1.09004 * 109.50027 * 180.24795 * 15 14 13 17 17 C 1.53117 * 109.50548 * 60.16743 * 15 14 13 18 18 C 1.53117 * 109.16219 * 182.40655 * 17 15 14 19 19 C 1.53036 * 109.27772 * 57.65259 * 18 17 15 20 20 N 1.46847 * 109.52446 * 300.82088 * 19 18 17 21 21 C 1.46902 * 110.99967 * 185.83672 * 20 19 18 22 22 C 1.46851 * 111.19644 * 61.74435 * 20 19 18 23 23 H 1.09002 * 109.47152 * 0.02569 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.02669 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.02650 * 1 2 3 26 26 H 0.96996 * 119.99853 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.52065 * 302.31061 * 17 15 14 28 28 H 1.09004 * 109.52174 * 62.43531 * 17 15 14 29 29 H 1.08992 * 109.50608 * 177.59562 * 18 17 15 30 30 H 1.09006 * 109.49798 * 297.67325 * 18 17 15 31 31 H 1.08994 * 109.46254 * 60.83754 * 19 18 17 32 32 H 1.08997 * 109.46171 * 180.80974 * 19 18 17 33 33 H 1.08998 * 109.46989 * 56.05085 * 21 20 19 34 34 H 1.09007 * 109.46741 * 176.04449 * 21 20 19 35 35 H 1.08998 * 109.47326 * 296.04726 * 21 20 19 36 36 H 1.09001 * 109.46146 * 178.24306 * 22 20 19 37 37 H 1.09000 * 109.46392 * 58.27152 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3043 1.0845 0.0000 4 6 3.5824 0.6515 0.0006 5 6 4.7206 1.4631 0.0013 6 1 5.7033 1.0151 0.0021 7 6 4.5865 2.8600 0.0009 8 7 3.3979 3.4020 0.0004 9 14 6.1075 3.9445 0.0025 10 1 7.3233 3.0919 0.0048 11 1 6.1056 4.8016 -1.2101 12 1 6.1026 4.8021 1.2149 13 7 3.5752 -0.6766 0.0015 14 6 2.3122 -1.0953 0.0066 15 6 1.8547 -2.5312 0.0143 16 1 0.7652 -2.5660 0.0128 17 6 2.3868 -3.2306 1.2681 18 6 1.9684 -4.7032 1.2381 19 6 2.5017 -5.3540 -0.0403 20 7 1.9633 -4.6496 -1.2109 21 6 2.3426 -5.3311 -2.4558 22 6 2.3913 -3.2449 -1.2286 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5134 0.8902 25 1 -0.3633 -0.5143 -0.8898 26 1 3.3052 4.3675 -0.0003 27 1 3.4745 -3.1613 1.2900 28 1 1.9734 -2.7515 2.1557 29 1 2.3804 -5.2164 2.1068 30 1 0.8807 -4.7728 1.2562 31 1 3.5900 -5.2962 -0.0504 32 1 2.1932 -6.3989 -0.0717 33 1 2.0098 -6.3683 -2.4181 34 1 1.8732 -4.8295 -3.3021 35 1 3.4261 -5.3011 -2.5709 36 1 2.0027 -2.7581 -2.1231 37 1 3.4802 -3.1970 -1.2332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260513259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:31 Heat of formation + Delta-G solvation = -7.561686 kcal Electronic energy + Delta-G solvation = -18648.020024 eV Core-core repulsion = 15811.556205 eV Total energy + Delta-G solvation = -2836.463819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02874 -38.58058 -34.16990 -33.58902 -32.35279 -31.29956 -29.71495 -27.67860 -26.48177 -24.34002 -22.54306 -22.31376 -20.49582 -19.53651 -18.77442 -17.36863 -15.52967 -15.22524 -14.90184 -14.57522 -14.48707 -14.09177 -13.81174 -13.36059 -12.96489 -12.77892 -12.45689 -12.13941 -12.07249 -12.02900 -11.60335 -11.46467 -11.34150 -11.11208 -10.84395 -10.69945 -10.40130 -10.21634 -10.15833 -9.97529 -9.56275 -9.10368 -8.46192 -8.11047 -7.22411 -6.89890 -4.61553 2.86196 3.02893 3.10113 3.30970 3.84764 4.06082 4.22976 4.81631 5.10030 5.17869 5.24863 5.37357 5.41896 5.59910 5.63090 5.70907 5.82377 5.93573 5.94048 6.07418 6.12263 6.16936 6.21697 6.28393 6.31319 6.34147 6.40957 6.67516 6.72748 6.80794 7.02349 7.15657 7.29331 7.31452 7.80347 7.98821 8.23797 8.55678 8.73236 9.89227 10.13396 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.005565 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.834487 B = 5029.845987 C = 5347.220545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.188 4.188 3 O -0.182 6.182 4 C 0.346 3.654 5 C -0.431 4.431 6 H 0.109 0.891 7 C 0.070 3.930 8 N -0.778 5.778 9 Si 0.929 3.071 10 H -0.257 1.257 11 H -0.271 1.271 12 H -0.271 1.271 13 N -0.606 5.606 14 C 0.021 3.979 15 C 0.011 3.989 16 H 0.076 0.924 17 C -0.108 4.108 18 C -0.115 4.115 19 C 0.056 3.944 20 N -0.547 5.547 21 C 0.027 3.973 22 C 0.071 3.929 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.284 0.716 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -9.665 -0.588 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.244 4.244 3 O -0.074 6.074 4 C 0.161 3.839 5 C -0.467 4.467 6 H 0.127 0.873 7 C -0.152 4.152 8 N -0.405 5.405 9 Si 0.753 3.247 10 H -0.181 1.181 11 H -0.196 1.196 12 H -0.196 1.196 13 N -0.339 5.339 14 C -0.104 4.104 15 C -0.009 4.009 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.271 5.271 21 C -0.122 4.122 22 C -0.057 4.057 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.079 -9.829 -0.561 10.315 hybrid contribution 0.840 1.086 -0.106 1.377 sum -2.238 -8.743 -0.667 9.050 Atomic orbital electron populations 1.19689 0.87599 1.01612 1.00527 1.22587 0.93521 0.85945 1.22354 1.84799 1.17202 1.32581 1.72853 1.22006 0.82583 0.87469 0.91802 1.18391 0.91219 0.89301 1.47754 0.87345 1.26096 0.98048 0.98878 0.92163 1.69724 1.23948 1.13399 1.33472 0.85905 0.80888 0.79299 0.78632 1.18058 1.19628 1.19626 1.70750 1.20136 1.09221 1.33775 1.20858 0.90446 0.93927 1.05178 1.19269 0.99057 0.88624 0.93909 0.90578 1.21529 1.01666 0.93742 0.97613 1.21602 1.01326 0.96277 0.96117 1.22072 0.97017 0.97295 0.90803 1.61961 1.60090 1.02913 1.02145 1.22311 0.98430 0.98972 0.92440 1.22026 0.98670 0.86456 0.98525 0.92310 0.92458 0.92395 0.90466 0.91436 0.92216 0.91893 0.91430 0.95017 0.91387 0.91815 0.91534 0.95876 0.91290 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.71 9.69 36.01 0.35 -0.36 16 2 C -0.19 -4.69 7.42 -35.13 -0.26 -4.95 16 3 O -0.18 -5.28 9.06 3.09 0.03 -5.26 16 4 C 0.35 10.08 7.66 -16.54 -0.13 9.96 16 5 C -0.43 -11.96 9.45 -38.21 -0.36 -12.32 16 6 H 0.11 2.88 7.85 -52.49 -0.41 2.47 16 7 C 0.07 1.80 5.50 -17.27 -0.10 1.70 16 8 N -0.78 -20.81 11.98 55.57 0.67 -20.15 16 9 Si 0.93 18.68 29.56 -169.99 -5.03 13.66 16 10 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 N -0.61 -16.62 11.34 -9.64 -0.11 -16.73 16 14 C 0.02 0.52 5.62 -82.88 -0.47 0.05 16 15 C 0.01 0.21 2.72 -91.69 -0.25 -0.04 16 16 H 0.08 1.39 7.45 -51.93 -0.39 1.00 16 17 C -0.11 -1.88 5.27 -26.61 -0.14 -2.02 16 18 C -0.12 -1.59 6.09 -26.65 -0.16 -1.75 16 19 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 20 N -0.55 -8.24 4.91 -242.96 -1.19 -9.43 16 21 C 0.03 0.34 9.59 60.07 0.58 0.91 16 22 C 0.07 1.28 4.73 -3.83 -0.02 1.26 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -30.53 304.84 -7.86 -38.39 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.85 Total: 1.74 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.98 Total: -6.82 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.64 Total: -46.31 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.03 Total: -5.26 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.53 -7.86 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260513259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.829 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds