Wall clock time and date at job start Mon Mar 30 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40302 * 126.09556 * 2 1 4 4 C 1.31065 * 108.27063 * 179.97438 * 3 2 1 5 5 C 1.39294 * 108.08249 * 0.02562 * 4 3 2 6 6 C 1.34323 * 126.09215 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03226 * 0.12342 * 6 2 1 8 8 C 1.53365 * 108.38626 * 163.44905 * 7 6 2 9 9 C 1.53108 * 109.50657 * 49.92925 * 8 7 6 10 10 C 1.53000 * 109.46814 * 49.73612 * 9 8 7 11 11 C 1.53000 * 109.46392 * 169.71505 * 9 8 7 12 12 C 1.50833 * 127.90296 * 180.15401 * 5 4 3 13 13 O 1.42908 * 109.68318 * 283.08847 * 12 5 4 14 14 C 1.50700 * 109.68139 * 43.60709 * 12 5 4 15 15 H 1.07995 * 120.00404 * 35.63810 * 14 12 5 16 16 C 1.37884 * 119.99891 * 215.64145 * 14 12 5 17 17 N 1.31518 * 119.99884 * 181.87815 * 16 14 12 18 18 Si 1.86800 * 120.00199 * 1.87764 * 16 14 12 19 19 H 1.48495 * 109.47257 * 85.27303 * 18 16 14 20 20 H 1.48501 * 109.46893 * 205.27523 * 18 16 14 21 21 H 1.48502 * 109.46893 * 325.27267 * 18 16 14 22 22 H 1.09003 * 109.47506 * 270.02903 * 1 2 3 23 23 H 1.09004 * 109.47207 * 30.02212 * 1 2 3 24 24 H 1.08991 * 109.47456 * 150.02349 * 1 2 3 25 25 H 1.08001 * 125.96040 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.68159 * 43.72935 * 7 6 2 27 27 H 1.09003 * 109.68222 * 283.17601 * 7 6 2 28 28 H 1.09000 * 109.46365 * 169.93463 * 8 7 6 29 29 H 1.08995 * 109.46817 * 289.91454 * 8 7 6 30 30 H 1.08997 * 109.46968 * 60.00264 * 10 9 8 31 31 H 1.09000 * 109.46777 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47030 * 300.00176 * 10 9 8 33 33 H 1.09005 * 109.47387 * 55.18435 * 11 9 8 34 34 H 1.09000 * 109.47501 * 175.18043 * 11 9 8 35 35 H 1.08997 * 109.46933 * 295.18268 * 11 9 8 36 36 H 0.96697 * 113.99472 * 54.16123 * 13 12 5 37 37 H 0.96992 * 119.99974 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7325 0.0006 5 6 3.5455 -0.6604 0.0003 6 6 2.2562 -1.0854 0.0005 7 6 1.8436 -2.5362 -0.0014 8 6 3.0539 -3.3827 -0.4146 9 6 4.2696 -2.9807 0.4248 10 6 3.8854 -2.9691 1.9057 11 6 5.4000 -3.9867 0.1994 12 6 4.7398 -1.5817 0.0040 13 8 5.3112 -1.6342 -1.3048 14 6 5.7661 -1.0783 0.9860 15 1 5.4490 -0.6117 1.9069 16 6 7.1100 -1.2134 0.7087 17 7 8.0056 -0.8076 1.5821 18 14 7.6585 -1.9727 -0.9074 19 1 7.6985 -0.9245 -1.9585 20 1 9.0120 -2.5613 -0.7436 21 1 6.7011 -3.0360 -1.3049 22 1 -0.3634 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5134 25 1 4.4106 1.3706 0.0011 26 1 1.0311 -2.6858 -0.7124 27 1 1.5164 -2.8261 0.9971 28 1 2.8323 -4.4374 -0.2509 29 1 3.2701 -3.2166 -1.4699 30 1 3.5519 -3.9635 2.2023 31 1 4.7510 -2.6833 2.5034 32 1 3.0798 -2.2527 2.0665 33 1 5.6156 -4.0582 -0.8668 34 1 6.2930 -3.6547 0.7290 35 1 5.0970 -4.9639 0.5751 36 1 5.5330 -0.7676 -1.6721 37 1 8.9510 -0.9023 1.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:02 Heat of formation + Delta-G solvation = 40.575044 kcal Electronic energy + Delta-G solvation = -20095.404883 eV Core-core repulsion = 17261.028429 eV Total energy + Delta-G solvation = -2834.376454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08696 -38.08802 -35.01382 -32.89964 -32.21852 -31.16035 -28.86643 -26.92422 -26.33835 -25.35649 -24.19190 -21.88699 -20.00455 -19.66905 -17.32261 -16.90116 -16.23922 -15.36124 -15.13889 -15.05569 -14.21559 -13.88005 -13.66328 -13.16635 -12.63577 -12.57248 -12.42889 -12.17343 -11.91899 -11.76148 -11.57010 -11.41406 -11.09956 -10.82393 -10.55572 -10.22896 -10.16987 -9.90248 -9.75957 -9.39616 -8.75382 -8.66823 -8.39710 -7.87905 -7.55854 -5.98706 -4.08656 2.40947 2.98566 3.49056 3.55638 3.71598 3.90788 4.67030 4.85019 4.98547 5.22383 5.28110 5.30748 5.37077 5.47231 5.52917 5.71213 5.84198 5.93705 5.99013 6.18169 6.30089 6.32086 6.47465 6.51801 6.63777 6.69083 6.75807 6.91061 6.95041 7.28484 7.34150 7.35802 7.44138 7.60265 7.73070 8.30065 8.33181 8.77504 9.01338 9.62642 11.09759 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.010469 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.431320 B = 2673.871875 C = 3091.560298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.383 5.383 3 N -0.322 5.322 4 C 0.074 3.926 5 C -0.220 4.220 6 C 0.073 3.927 7 C -0.049 4.049 8 C -0.106 4.106 9 C -0.038 4.038 10 C -0.126 4.126 11 C -0.138 4.138 12 C 0.300 3.700 13 O -0.550 6.550 14 C -0.534 4.534 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.898 5.898 18 Si 0.930 3.070 19 H -0.309 1.309 20 H -0.340 1.340 21 H -0.227 1.227 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.182 0.818 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.362 0.638 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 -3.903 -4.047 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.166 5.166 3 N -0.143 5.143 4 C -0.110 4.110 5 C -0.231 4.231 6 C -0.054 4.054 7 C -0.088 4.088 8 C -0.145 4.145 9 C -0.039 4.039 10 C -0.184 4.184 11 C -0.194 4.194 12 C 0.260 3.740 13 O -0.358 6.358 14 C -0.572 4.572 15 H 0.095 0.905 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.770 3.230 19 H -0.239 1.239 20 H -0.274 1.274 21 H -0.154 1.154 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.199 0.801 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.211 0.789 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.553 -3.484 -3.875 14.520 hybrid contribution 0.892 -0.098 -0.668 1.119 sum -12.661 -3.582 -4.543 13.920 Atomic orbital electron populations 1.21646 0.75816 1.03539 1.02546 1.48120 1.05662 1.03915 1.58861 1.77421 1.01911 1.07343 1.27662 1.23625 0.94342 0.95387 0.97688 1.21026 0.94730 0.94495 1.12842 1.20954 0.91409 0.90132 1.02953 1.20304 0.98778 0.88147 1.01603 1.21708 0.94115 0.97645 1.00986 1.20543 0.93050 0.95756 0.94503 1.21764 1.01957 0.98727 0.95906 1.22152 0.99220 0.96181 1.01876 1.17665 0.86945 0.88772 0.80600 1.86447 1.80459 1.33629 1.35293 1.21162 0.89774 1.40539 1.05712 0.90517 1.25228 0.96411 0.94064 0.98150 1.69980 1.01253 1.46433 1.35736 0.86218 0.73649 0.81625 0.81544 1.23878 1.27416 1.15401 0.91545 0.89965 0.90296 0.80140 0.91684 0.90337 0.92213 0.91375 0.94700 0.90648 0.93790 0.91668 0.91404 0.94967 0.78934 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.23 11.32 59.84 0.68 1.91 16 2 N -0.38 -6.57 4.00 -63.88 -0.26 -6.82 16 3 N -0.32 -6.35 12.59 30.54 0.38 -5.96 16 4 C 0.07 1.52 11.56 -17.49 -0.20 1.32 16 5 C -0.22 -4.53 4.53 -105.05 -0.48 -5.01 16 6 C 0.07 1.31 5.96 -82.33 -0.49 0.82 16 7 C -0.05 -0.73 5.26 -27.63 -0.15 -0.87 16 8 C -0.11 -1.74 4.84 -26.49 -0.13 -1.86 16 9 C -0.04 -0.74 0.40 -154.21 -0.06 -0.80 16 10 C -0.13 -2.42 7.32 37.16 0.27 -2.15 16 11 C -0.14 -2.76 6.72 37.16 0.25 -2.51 16 12 C 0.30 6.56 0.44 -92.61 -0.04 6.52 16 13 O -0.55 -11.94 6.83 -35.23 -0.24 -12.18 16 14 C -0.53 -13.89 6.40 -34.44 -0.22 -14.11 16 15 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 16 C 0.06 1.76 4.94 -17.82 -0.09 1.67 16 17 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.93 22.69 22.53 -169.99 -3.83 18.86 16 19 H -0.31 -7.50 7.02 56.52 0.40 -7.10 16 20 H -0.34 -8.86 7.11 56.52 0.40 -8.46 16 21 H -0.23 -5.17 3.11 56.52 0.18 -5.00 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 0.72 7.57 -51.93 -0.39 0.32 16 25 H 0.18 3.60 8.06 -52.49 -0.42 3.18 16 26 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 27 H 0.08 1.08 6.98 -51.93 -0.36 0.72 16 28 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.66 6.92 -51.93 -0.36 1.30 16 32 H 0.04 0.83 5.61 -51.93 -0.29 0.54 16 33 H 0.06 1.32 5.74 -51.93 -0.30 1.03 16 34 H 0.07 1.53 5.43 -51.93 -0.28 1.25 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.36 7.43 7.82 45.56 0.36 7.78 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 273.45 15.07 4.12 4.12 Total: -1.00 -31.49 273.45 -4.46 -35.94 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.76 Total: 7.10 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.65 Total: -15.07 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.90 Total: -38.78 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.24 Total: -12.18 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -3.83 Total: 18.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.49 -4.46 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds