Wall clock time and date at job start Mon Mar 30 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40302 * 126.09556 * 2 1 4 4 C 1.31065 * 108.27063 * 179.97438 * 3 2 1 5 5 C 1.39294 * 108.08249 * 0.02562 * 4 3 2 6 6 C 1.34323 * 126.09215 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03226 * 0.12342 * 6 2 1 8 8 C 1.53365 * 108.38626 * 163.44905 * 7 6 2 9 9 C 1.53108 * 109.50657 * 49.92925 * 8 7 6 10 10 C 1.53000 * 109.46814 * 49.73612 * 9 8 7 11 11 C 1.53000 * 109.46392 * 169.71505 * 9 8 7 12 12 C 1.50833 * 127.90296 * 180.15401 * 5 4 3 13 13 O 1.42908 * 109.68318 * 283.08847 * 12 5 4 14 14 C 1.50700 * 109.68139 * 43.60709 * 12 5 4 15 15 H 1.07995 * 120.00404 * 35.63810 * 14 12 5 16 16 C 1.37884 * 119.99891 * 215.64145 * 14 12 5 17 17 N 1.31518 * 119.99884 * 181.87815 * 16 14 12 18 18 Si 1.86800 * 120.00199 * 1.87764 * 16 14 12 19 19 H 1.48495 * 109.47257 * 85.27303 * 18 16 14 20 20 H 1.48501 * 109.46893 * 205.27523 * 18 16 14 21 21 H 1.48502 * 109.46893 * 325.27267 * 18 16 14 22 22 H 1.09003 * 109.47506 * 270.02903 * 1 2 3 23 23 H 1.09004 * 109.47207 * 30.02212 * 1 2 3 24 24 H 1.08991 * 109.47456 * 150.02349 * 1 2 3 25 25 H 1.08001 * 125.96040 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.68159 * 43.72935 * 7 6 2 27 27 H 1.09003 * 109.68222 * 283.17601 * 7 6 2 28 28 H 1.09000 * 109.46365 * 169.93463 * 8 7 6 29 29 H 1.08995 * 109.46817 * 289.91454 * 8 7 6 30 30 H 1.08997 * 109.46968 * 60.00264 * 10 9 8 31 31 H 1.09000 * 109.46777 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47030 * 300.00176 * 10 9 8 33 33 H 1.09005 * 109.47387 * 55.18435 * 11 9 8 34 34 H 1.09000 * 109.47501 * 175.18043 * 11 9 8 35 35 H 1.08997 * 109.46933 * 295.18268 * 11 9 8 36 36 H 0.96697 * 113.99472 * 54.16123 * 13 12 5 37 37 H 0.96992 * 119.99974 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7325 0.0006 5 6 3.5455 -0.6604 0.0003 6 6 2.2562 -1.0854 0.0005 7 6 1.8436 -2.5362 -0.0014 8 6 3.0539 -3.3827 -0.4146 9 6 4.2696 -2.9807 0.4248 10 6 3.8854 -2.9691 1.9057 11 6 5.4000 -3.9867 0.1994 12 6 4.7398 -1.5817 0.0040 13 8 5.3112 -1.6342 -1.3048 14 6 5.7661 -1.0783 0.9860 15 1 5.4490 -0.6117 1.9069 16 6 7.1100 -1.2134 0.7087 17 7 8.0056 -0.8076 1.5821 18 14 7.6585 -1.9727 -0.9074 19 1 7.6985 -0.9245 -1.9585 20 1 9.0120 -2.5613 -0.7436 21 1 6.7011 -3.0360 -1.3049 22 1 -0.3634 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5134 25 1 4.4106 1.3706 0.0011 26 1 1.0311 -2.6858 -0.7124 27 1 1.5164 -2.8261 0.9971 28 1 2.8323 -4.4374 -0.2509 29 1 3.2701 -3.2166 -1.4699 30 1 3.5519 -3.9635 2.2023 31 1 4.7510 -2.6833 2.5034 32 1 3.0798 -2.2527 2.0665 33 1 5.6156 -4.0582 -0.8668 34 1 6.2930 -3.6547 0.7290 35 1 5.0970 -4.9639 0.5751 36 1 5.5330 -0.7676 -1.6721 37 1 8.9510 -0.9023 1.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:01 Heat of formation + Delta-G solvation = 16.751176 kcal Electronic energy + Delta-G solvation = -20096.437964 eV Core-core repulsion = 17261.028429 eV Total energy + Delta-G solvation = -2835.409535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.53499 -39.65998 -36.58689 -34.38649 -34.10863 -32.60405 -30.45055 -28.26423 -27.88495 -27.02815 -25.69058 -23.43289 -21.49407 -21.12514 -18.98643 -18.72359 -17.63984 -17.10283 -16.75159 -16.54228 -15.79611 -15.23509 -15.08844 -14.68140 -14.31209 -13.97441 -13.74088 -13.64836 -13.48417 -13.22776 -13.05170 -12.97753 -12.54098 -12.45631 -12.30930 -11.98523 -11.74415 -11.51261 -11.31695 -10.99080 -10.75385 -10.29254 -10.03630 -9.69821 -9.06237 -8.15934 -6.25753 1.00598 1.54504 1.65114 1.77005 1.89426 1.99683 2.60173 3.18841 3.64888 3.75485 3.86230 4.07899 4.17832 4.37825 4.43521 4.50178 4.56680 4.65724 4.72191 4.79238 4.87065 4.97058 5.03864 5.09528 5.15935 5.25121 5.26524 5.32935 5.43263 5.62733 5.75086 5.77494 5.84275 5.93468 6.23512 6.32466 6.75765 6.86927 6.98911 7.49949 8.96685 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.010469 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.431320 B = 2673.871875 C = 3091.560298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 N -0.340 5.340 4 C 0.050 3.950 5 C -0.258 4.258 6 C 0.089 3.911 7 C -0.047 4.047 8 C -0.100 4.100 9 C -0.043 4.043 10 C -0.118 4.118 11 C -0.138 4.138 12 C 0.301 3.699 13 O -0.550 6.550 14 C -0.511 4.511 15 H 0.028 0.972 16 C 0.011 3.989 17 N -0.953 5.953 18 Si 0.983 3.017 19 H -0.306 1.306 20 H -0.365 1.365 21 H -0.195 1.195 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.167 0.833 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.366 0.634 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.528 -6.313 -5.629 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.156 5.156 3 N -0.163 5.163 4 C -0.133 4.133 5 C -0.270 4.270 6 C -0.041 4.041 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.044 4.044 10 C -0.175 4.175 11 C -0.195 4.195 12 C 0.261 3.739 13 O -0.358 6.358 14 C -0.549 4.549 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.593 5.593 18 Si 0.822 3.178 19 H -0.235 1.235 20 H -0.301 1.301 21 H -0.120 1.120 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.133 0.867 25 H 0.184 0.816 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.214 0.786 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.466 -5.876 -5.470 19.223 hybrid contribution 1.932 0.717 -0.076 2.063 sum -15.534 -5.159 -5.546 17.282 Atomic orbital electron populations 1.22175 0.72232 1.05919 1.04436 1.48547 1.07557 1.02872 1.56671 1.77340 1.01728 1.08955 1.28305 1.23547 0.94716 0.95854 0.99150 1.20886 0.95763 0.94134 1.16216 1.21411 0.90435 0.92008 1.00239 1.20505 0.99231 0.84849 1.03961 1.21645 0.92616 0.99934 0.99604 1.20557 0.94877 0.93623 0.95302 1.21667 1.00081 1.00628 0.95169 1.22116 0.98082 0.97975 1.01301 1.17578 0.86212 0.90892 0.79222 1.86370 1.80406 1.34069 1.34980 1.21315 0.90730 1.38179 1.04685 0.95330 1.25973 0.96668 0.94908 1.00986 1.70136 1.01327 1.49753 1.38108 0.85368 0.72399 0.81866 0.78138 1.23528 1.30140 1.12033 0.89833 0.88993 0.86661 0.81560 0.87505 0.88329 0.88680 0.91960 0.91111 0.95050 0.93799 0.91761 0.95015 0.91614 0.78554 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 11.32 127.77 1.45 3.13 16 2 N -0.37 -11.65 4.00 -356.02 -1.43 -13.07 16 3 N -0.34 -13.20 12.59 -57.28 -0.72 -13.92 16 4 C 0.05 2.13 11.56 85.06 0.98 3.11 16 5 C -0.26 -10.49 4.53 -20.14 -0.09 -10.58 16 6 C 0.09 2.89 5.96 41.64 0.25 3.14 16 7 C -0.05 -1.10 5.26 30.01 0.16 -0.94 16 8 C -0.10 -2.72 4.84 30.75 0.15 -2.57 16 9 C -0.04 -1.57 0.40 -51.99 -0.02 -1.59 16 10 C -0.12 -4.30 7.32 71.98 0.53 -3.77 16 11 C -0.14 -5.19 6.72 71.98 0.48 -4.70 16 12 C 0.30 13.05 0.44 -12.09 -0.01 13.05 16 13 O -0.55 -23.26 6.83 -148.98 -1.02 -24.28 16 14 C -0.51 -27.84 6.40 25.60 0.16 -27.67 16 15 H 0.03 1.80 7.98 -2.91 -0.02 1.77 16 16 C 0.01 0.63 4.94 84.66 0.42 1.05 16 17 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 18 Si 0.98 48.16 22.53 68.60 1.55 49.71 16 19 H -0.31 -14.64 7.02 99.48 0.70 -13.94 16 20 H -0.36 -19.31 7.11 99.48 0.71 -18.61 16 21 H -0.20 -8.50 3.11 99.48 0.31 -8.19 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.12 1.32 7.57 -2.39 -0.02 1.30 16 25 H 0.17 7.16 8.06 -2.91 -0.02 7.14 16 26 H 0.11 1.74 7.76 -2.39 -0.02 1.72 16 27 H 0.10 2.03 6.98 -2.39 -0.02 2.01 16 28 H 0.09 2.00 8.11 -2.39 -0.02 1.98 16 29 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.39 6.92 -2.39 -0.02 1.37 16 32 H 0.04 1.56 5.61 -2.39 -0.01 1.55 16 33 H 0.06 2.40 5.74 -2.38 -0.01 2.39 16 34 H 0.03 1.40 5.43 -2.39 -0.01 1.39 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.37 14.91 7.82 -74.06 -0.58 14.34 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -73.56 273.45 3.23 -70.33 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.09 Total: 19.79 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.46 Total: -28.36 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.85 Total: -87.20 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.02 Total: -24.28 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.55 Total: 49.71 kcal Total: -73.56 3.23 -70.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.081 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds