Wall clock time and date at job start Mon Mar 30 2020 04:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34566 * 126.18959 * 2 1 4 4 C 1.40484 * 108.03797 * 179.87783 * 3 2 1 5 5 N 1.30127 * 108.22944 * 0.12372 * 4 3 2 6 6 N 1.35196 * 126.18966 * 179.97438 * 2 1 3 7 7 C 1.46497 * 126.00476 * 0.06682 * 6 2 1 8 8 C 1.50956 * 123.48545 * 180.30877 * 4 3 2 9 9 C 1.53368 * 108.20332 * 16.60138 * 8 4 3 10 10 C 1.53023 * 109.75365 * 309.35021 * 9 8 4 11 11 H 1.09000 * 109.42771 * 311.65790 * 10 9 8 12 12 C 1.52995 * 109.43333 * 191.80640 * 10 9 8 13 13 C 1.50883 * 128.32736 * 359.83728 * 3 2 1 14 14 O 1.42897 * 109.72253 * 76.84854 * 13 3 2 15 15 C 1.50707 * 109.71952 * 316.24357 * 13 3 2 16 16 H 1.07994 * 120.00053 * 124.95968 * 15 13 3 17 17 C 1.37882 * 119.99585 * 305.23899 * 15 13 3 18 18 N 1.31507 * 120.00286 * 354.82412 * 17 15 13 19 19 Si 1.86798 * 119.99558 * 174.82618 * 17 15 13 20 20 H 1.48498 * 109.47516 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46917 * 120.00181 * 19 17 15 22 22 H 1.48505 * 109.47232 * 239.99516 * 19 17 15 23 23 H 1.09002 * 109.47002 * 85.01826 * 1 2 3 24 24 H 1.09001 * 109.47433 * 205.01114 * 1 2 3 25 25 H 1.08996 * 109.47221 * 325.01590 * 1 2 3 26 26 H 1.09001 * 109.47511 * 89.99770 * 7 6 2 27 27 H 1.09005 * 109.46887 * 209.99262 * 7 6 2 28 28 H 1.08992 * 109.47155 * 329.99346 * 7 6 2 29 29 H 1.09000 * 109.71161 * 136.27954 * 8 4 3 30 30 H 1.08993 * 109.71523 * 256.87739 * 8 4 3 31 31 H 1.08996 * 109.42991 * 69.43892 * 9 8 4 32 32 H 1.09004 * 109.42237 * 189.27097 * 9 8 4 33 33 H 1.09002 * 109.46897 * 299.74312 * 12 10 9 34 34 H 1.09001 * 109.47403 * 59.74297 * 12 10 9 35 35 H 1.09004 * 109.47197 * 179.74659 * 12 10 9 36 36 H 0.96704 * 113.99718 * 299.39324 * 14 13 3 37 37 H 0.96997 * 120.00597 * 184.99934 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3016 1.0860 0.0000 4 6 3.6365 0.6484 0.0028 5 7 3.6383 -0.6529 0.0018 6 7 2.3053 -1.0911 0.0005 7 6 1.8573 -2.4859 -0.0003 8 6 4.8201 1.5853 0.0105 9 6 4.3278 2.9758 0.4305 10 6 3.1179 3.3739 -0.4175 11 1 3.3383 3.1957 -1.4700 12 6 2.8147 4.8586 -0.2063 13 6 1.8988 2.5401 -0.0034 14 8 1.4721 2.9253 1.3049 15 6 0.7778 2.7550 -0.9875 16 1 -0.1451 3.2126 -0.6632 17 6 0.9284 2.3620 -2.3005 18 7 2.0841 1.8937 -2.7183 19 14 -0.5092 2.4948 -3.4858 20 1 -1.6889 3.0476 -2.7732 21 1 -0.1428 3.3939 -4.6094 22 1 -0.8388 1.1478 -4.0171 23 1 -0.3633 0.0892 -1.0238 24 1 -0.3634 -0.9313 0.4345 25 1 -0.3633 0.8419 0.5892 26 1 1.7471 -2.8317 -1.0281 27 1 2.5932 -3.1041 0.5140 28 1 0.8985 -2.5598 0.5127 29 1 5.5663 1.2292 0.7209 30 1 5.2564 1.6347 -0.9871 31 1 4.0429 2.9571 1.4823 32 1 5.1272 3.7025 0.2851 33 1 2.5917 5.0378 0.8455 34 1 3.6806 5.4517 -0.5004 35 1 1.9556 5.1439 -0.8135 36 1 0.7093 2.4290 1.6318 37 1 2.2123 1.6854 -3.6569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260750538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:18 Heat of formation + Delta-G solvation = -1.110953 kcal Electronic energy + Delta-G solvation = -20068.457797 eV Core-core repulsion = 17232.273702 eV Total energy + Delta-G solvation = -2836.184095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10484 -38.76105 -35.89913 -34.56145 -33.63113 -32.36289 -31.01088 -28.83235 -27.61685 -26.52085 -25.13417 -23.24369 -21.38851 -20.20875 -19.55457 -18.55641 -17.43116 -16.62990 -16.29303 -15.93643 -15.48461 -15.01146 -14.66446 -14.56169 -14.21470 -13.90742 -13.66857 -13.42794 -13.37446 -13.07976 -12.79635 -12.72885 -12.60889 -12.51460 -12.22440 -12.01850 -11.98814 -11.53494 -11.23699 -11.16145 -10.92746 -10.26077 -9.98259 -9.61481 -8.69251 -7.88284 -6.06917 1.29988 1.38577 1.46194 1.52712 1.97746 2.31294 2.48325 3.31924 3.76971 4.11843 4.18074 4.32815 4.36755 4.41584 4.43578 4.53327 4.67526 4.74920 4.84587 4.90762 4.93776 5.03528 5.19335 5.22104 5.25523 5.33592 5.34879 5.44717 5.66815 5.76483 5.81876 5.98365 6.21203 6.30403 6.46990 6.61261 6.83597 7.18161 7.42445 7.70296 9.05842 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.014057 C = 0.009731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.572497 B = 1991.450410 C = 2876.598314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.074 3.926 3 C -0.198 4.198 4 C 0.069 3.931 5 N -0.346 5.346 6 N -0.400 5.400 7 C 0.103 3.897 8 C -0.028 4.028 9 C -0.101 4.101 10 C -0.075 4.075 11 H 0.077 0.923 12 C -0.117 4.117 13 C 0.322 3.678 14 O -0.581 6.581 15 C -0.531 4.531 16 H 0.053 0.947 17 C 0.047 3.953 18 N -0.884 5.884 19 Si 0.923 3.077 20 H -0.265 1.265 21 H -0.291 1.291 22 H -0.289 1.289 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.364 0.636 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 -3.841 5.166 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.209 4.209 4 C -0.097 4.097 5 N -0.168 5.168 6 N -0.186 5.186 7 C -0.038 4.038 8 C -0.067 4.067 9 C -0.139 4.139 10 C -0.094 4.094 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.281 3.719 14 O -0.387 6.387 15 C -0.570 4.570 16 H 0.071 0.929 17 C -0.155 4.155 18 N -0.522 5.522 19 Si 0.750 3.250 20 H -0.190 1.190 21 H -0.218 1.218 22 H -0.215 1.215 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.210 0.790 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.029 -4.765 4.948 6.869 hybrid contribution -1.586 0.137 -1.309 2.061 sum -1.557 -4.628 3.639 6.090 Atomic orbital electron populations 1.20236 0.86444 1.02937 1.02343 1.20746 0.95180 0.86862 1.02242 1.20719 0.91167 0.97918 1.11072 1.22503 0.97250 0.91314 0.98677 1.76652 0.98371 1.12963 1.28838 1.48534 1.02927 1.06530 1.60604 1.21891 1.01781 0.77042 1.03057 1.20032 0.92519 0.92702 1.01419 1.21568 0.98066 0.94727 0.99557 1.21117 0.93454 0.94562 1.00285 0.90453 1.21469 0.99729 0.95740 1.00453 1.17109 0.91485 0.84509 0.78758 1.86325 1.51794 1.65306 1.35261 1.21683 1.00769 1.39593 0.94922 0.92883 1.25236 0.96583 0.94533 0.99126 1.70061 1.23675 1.43981 1.14464 0.86063 0.81856 0.77086 0.79951 1.18954 1.21767 1.21503 0.92476 0.90093 0.89834 0.91705 0.89115 0.87552 0.90081 0.91390 0.92810 0.90680 0.93486 0.93449 0.94428 0.79030 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 8.80 71.24 0.63 -1.52 16 2 C 0.07 3.16 6.77 41.20 0.28 3.44 16 3 C -0.20 -9.24 3.62 -20.10 -0.07 -9.31 16 4 C 0.07 3.21 7.10 43.44 0.31 3.52 16 5 N -0.35 -15.86 12.56 -47.13 -0.59 -16.45 16 6 N -0.40 -16.26 4.02 -356.44 -1.43 -17.69 16 7 C 0.10 2.87 11.28 127.77 1.44 4.31 16 8 C -0.03 -1.12 6.31 30.05 0.19 -0.93 16 9 C -0.10 -4.00 5.16 30.73 0.16 -3.84 16 10 C -0.08 -3.42 1.84 -10.66 -0.02 -3.44 16 11 H 0.08 4.02 6.01 -2.39 -0.01 4.01 16 12 C -0.12 -4.84 8.78 71.98 0.63 -4.21 16 13 C 0.32 15.04 0.44 -12.09 -0.01 15.04 16 14 O -0.58 -25.47 11.56 -148.98 -1.72 -27.19 16 15 C -0.53 -26.30 5.78 25.60 0.15 -26.15 16 16 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 17 C 0.05 2.37 5.07 84.66 0.43 2.80 16 18 N -0.88 -47.61 10.39 21.45 0.22 -47.38 16 19 Si 0.92 41.16 29.54 68.60 2.03 43.19 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.08 2.14 6.96 -2.39 -0.02 2.12 16 25 H 0.08 2.82 6.93 -2.39 -0.02 2.80 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.11 2.27 6.98 -2.39 -0.02 2.25 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.05 2.16 7.74 -2.39 -0.02 2.14 16 32 H 0.07 2.54 8.09 -2.38 -0.02 2.53 16 33 H 0.05 1.89 7.49 -2.39 -0.02 1.87 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.65 7.56 -2.38 -0.02 1.64 16 36 H 0.36 13.84 8.22 -74.05 -0.61 13.23 16 37 H 0.25 13.40 8.32 -92.71 -0.77 12.63 16 Total: -1.00 -63.03 291.33 3.08 -59.95 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.46 Total: 25.87 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 4.12 Total: -20.30 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.80 Total: -81.53 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.72 Total: -27.19 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.03 3.08 -59.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260750538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.844 kcal (2) G-P(sol) polarization free energy of solvation -63.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds