Wall clock time and date at job start Mon Mar 30 2020 04:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00472 * 2 1 4 4 H 1.48497 * 109.47230 * 240.00453 * 3 2 1 5 5 H 1.48496 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46582 * 120.00302 * 3 2 1 7 7 C 1.37875 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.34334 * 126.16650 * 84.95763 * 10 9 7 12 12 O 1.34746 * 107.11387 * 180.02562 * 11 10 9 13 13 C 1.33970 * 107.75591 * 0.02562 * 12 11 10 14 14 C 1.50702 * 125.61642 * 180.26668 * 13 12 11 15 15 C 1.53000 * 109.46933 * 269.68441 * 14 13 12 16 16 C 1.53117 * 109.52277 * 294.87799 * 15 14 13 17 17 C 1.53047 * 109.27458 * 182.50585 * 16 15 14 18 18 N 1.46847 * 109.57872 * 59.08185 * 17 16 15 19 19 C 1.46846 * 111.19597 * 298.29139 * 18 17 16 20 20 C 1.53043 * 109.52242 * 61.74204 * 19 18 17 21 21 N 1.30254 * 108.75949 * 359.97438 * 13 12 11 22 22 H 0.97007 * 119.99729 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47110 * 59.99643 * 9 7 2 24 24 H 1.08999 * 109.46378 * 299.99683 * 9 7 2 25 25 H 1.07997 * 126.44323 * 0.05719 * 11 10 9 26 26 H 1.08997 * 109.47697 * 29.68419 * 14 13 12 27 27 H 1.09003 * 109.46973 * 149.68825 * 14 13 12 28 28 H 1.08995 * 109.52191 * 55.00271 * 15 14 13 29 29 H 1.09000 * 109.50646 * 302.37923 * 16 15 14 30 30 H 1.08999 * 109.50711 * 62.50227 * 16 15 14 31 31 H 1.09004 * 109.40752 * 299.06330 * 17 16 15 32 32 H 1.09002 * 109.45694 * 179.12541 * 17 16 15 33 33 H 1.00901 * 111.00010 * 62.38882 * 18 17 16 34 34 H 1.09000 * 109.46532 * 301.72238 * 19 18 17 35 35 H 1.09004 * 109.45261 * 181.75166 * 19 18 17 36 36 H 1.09002 * 109.49888 * 180.87744 * 20 19 18 37 37 H 1.08993 * 109.53801 * 60.78109 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6961 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2301 -3.6446 -0.0027 11 6 2.8177 -4.1862 1.0771 12 8 3.6163 -5.1787 0.6380 13 6 3.5078 -5.2304 -0.6963 14 6 4.2267 -6.2002 -1.5984 15 6 5.5628 -5.5961 -2.0351 16 6 5.3067 -4.3581 -2.8989 17 6 6.6446 -3.7950 -3.3840 18 7 7.3568 -4.8182 -4.1601 19 6 7.6556 -5.9967 -3.3366 20 6 6.3478 -6.6265 -2.8515 21 7 2.6739 -4.3083 -1.0848 22 1 -0.4850 0.8401 0.0004 23 1 0.6245 -2.5563 -0.8919 24 1 0.6239 -2.5574 0.8881 25 1 2.6761 -3.8835 2.1040 26 1 4.4073 -7.1311 -1.0608 27 1 3.6142 -6.4011 -2.4774 28 1 6.1396 -5.3129 -1.1547 29 1 4.6960 -4.6341 -3.7585 30 1 4.7859 -3.6040 -2.3089 31 1 7.2487 -3.5053 -2.5242 32 1 6.4649 -2.9225 -4.0122 33 1 6.8345 -5.0757 -4.9841 34 1 8.2550 -5.6968 -2.4771 35 1 8.2102 -6.7233 -3.9304 36 1 6.5704 -7.4922 -2.2275 37 1 5.7537 -6.9399 -3.7098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260917136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:52 Heat of formation + Delta-G solvation = -26.916772 kcal Electronic energy + Delta-G solvation = -18225.715210 eV Core-core repulsion = 15388.412091 eV Total energy + Delta-G solvation = -2837.303119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.16642 -39.92466 -36.36096 -35.36962 -34.66852 -32.13815 -31.68520 -29.76000 -27.73333 -25.46076 -23.94435 -23.72853 -22.25486 -21.65786 -20.99217 -18.63418 -17.93853 -17.52855 -16.86512 -16.59587 -15.81681 -15.59179 -15.54377 -15.21563 -14.94448 -14.45701 -14.13592 -13.93599 -13.55967 -13.22660 -13.11586 -12.76735 -12.66755 -12.55772 -12.40754 -12.16112 -12.09667 -11.96637 -11.50731 -11.38002 -11.34198 -11.22716 -10.64638 -9.57979 -9.28770 -8.25304 -6.38183 0.62756 1.36918 1.40234 1.48391 1.85870 1.90969 2.39136 3.05199 3.15366 3.40574 3.67784 3.83633 3.92876 4.15833 4.20403 4.31635 4.38380 4.40530 4.53435 4.62620 4.67032 4.80856 4.93044 4.93301 5.00160 5.06431 5.08824 5.15943 5.21941 5.25193 5.40421 5.45687 5.55473 5.66635 6.08945 6.09912 6.52138 6.70301 6.95791 7.29947 8.85045 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.005571 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.834095 B = 5024.408958 C = 5911.269266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.100 3.900 10 C -0.004 4.004 11 C -0.093 4.093 12 O -0.210 6.210 13 C 0.181 3.819 14 C -0.010 4.010 15 C -0.077 4.077 16 C -0.149 4.149 17 C 0.063 3.937 18 N -0.690 5.690 19 C 0.055 3.945 20 C -0.139 4.139 21 N -0.508 5.508 22 H 0.268 0.732 23 H 0.000 1.000 24 H 0.023 0.977 25 H 0.235 0.765 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.347 0.653 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 -14.483 -4.502 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.066 0.934 9 C 0.062 3.938 10 C -0.123 4.123 11 C -0.162 4.162 12 O -0.098 6.098 13 C -0.027 4.027 14 C -0.048 4.048 15 C -0.096 4.096 16 C -0.189 4.189 17 C -0.067 4.067 18 N -0.319 5.319 19 C -0.074 4.074 20 C -0.178 4.178 21 N -0.238 5.238 22 H 0.077 0.923 23 H 0.019 0.981 24 H 0.042 0.958 25 H 0.251 0.749 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.395 -13.999 -5.005 20.694 hybrid contribution -1.107 0.874 1.011 1.735 sum 13.288 -13.126 -3.994 19.100 Atomic orbital electron populations 1.70059 1.07589 1.28234 1.50754 1.25875 0.95786 1.02969 0.94285 0.85483 0.78352 0.78041 0.79086 1.19861 1.20075 1.18863 1.21206 0.92709 0.91155 1.51781 0.93392 1.17375 0.91472 0.88579 0.96332 1.22330 1.01938 0.99241 0.88763 1.24987 0.97230 0.92299 1.01703 1.84346 1.54630 1.46346 1.24482 1.27086 0.97231 0.98320 0.80043 1.20400 0.94843 0.93915 0.95669 1.21139 0.94214 0.95794 0.98474 1.22258 0.98739 0.97898 0.99974 1.21891 0.91991 0.95091 0.97755 1.60674 1.49711 1.12167 1.09349 1.22104 0.95999 0.91665 0.97624 1.22245 0.97226 0.97867 1.00496 1.70327 1.13115 1.07980 1.32406 0.92322 0.98123 0.95834 0.74874 0.86115 0.87315 0.91754 0.91620 0.94573 0.91910 0.91183 0.83449 0.91524 0.88598 0.88990 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -31.30 9.09 25.60 0.23 -31.06 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.10 5.62 5.52 29.10 0.16 5.78 16 10 C 0.00 -0.21 6.30 41.26 0.26 0.05 16 11 C -0.09 -3.72 12.08 66.93 0.81 -2.92 16 12 O -0.21 -7.61 10.78 -3.70 -0.04 -7.65 16 13 C 0.18 6.36 6.83 88.34 0.60 6.97 16 14 C -0.01 -0.24 5.32 29.85 0.16 -0.08 16 15 C -0.08 -1.63 2.24 -10.72 -0.02 -1.65 16 16 C -0.15 -3.95 5.13 30.65 0.16 -3.79 16 17 C 0.06 1.47 6.55 86.33 0.57 2.04 16 18 N -0.69 -12.83 6.87 -513.97 -3.53 -16.36 16 19 C 0.06 0.81 6.55 86.33 0.57 1.38 16 20 C -0.14 -1.91 5.37 30.65 0.16 -1.74 16 21 N -0.51 -22.70 10.66 -291.98 -3.11 -25.81 16 22 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 23 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 24 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.24 7.75 8.06 -2.91 -0.02 7.73 16 26 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.29 6.98 -2.39 -0.02 1.27 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.35 5.58 8.86 -89.69 -0.79 4.79 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.42 306.54 0.00 -70.41 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.26 Total: 12.52 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.12 Total: -24.01 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -6.36 Total: -98.23 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.04 Total: -7.65 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.42 0.00 -70.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260917136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.495 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds