Wall clock time and date at job start Mon Mar 30 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48499 * 109.47337 * 270.00016 * 3 2 1 5 5 H 1.48501 * 109.46858 * 150.00258 * 3 2 1 6 6 H 1.48499 * 109.47189 * 30.00567 * 3 2 1 7 7 C 1.38811 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00142 * 160.41567 * 7 2 1 9 9 N 1.36941 * 119.99676 * 340.41008 * 7 2 1 10 10 C 1.46816 * 120.08762 * 326.56471 * 9 7 2 11 11 C 1.53817 * 108.58901 * 235.82977 * 10 9 7 12 12 H 1.09005 * 111.21353 * 186.03550 * 11 10 9 13 13 C 1.53617 * 108.18048 * 63.62842 * 11 10 9 14 14 N 1.46764 * 109.32003 * 301.52877 * 13 11 10 15 15 C 1.46901 * 110.99929 * 171.20111 * 14 13 11 16 16 C 1.52997 * 117.50343 * 248.75108 * 15 14 13 17 17 C 1.52997 * 117.50118 * 180.08850 * 15 14 13 18 18 C 1.46760 * 112.09765 * 295.96177 * 14 13 11 19 19 C 1.53616 * 109.29992 * 64.05379 * 18 14 13 20 20 H 1.09005 * 111.21386 * 181.80066 * 19 18 14 21 21 C 1.46820 * 120.08098 * 146.28013 * 9 7 2 22 22 C 1.52287 * 106.93970 * 307.66586 * 11 10 9 23 23 O 1.20763 * 122.49916 * 240.28285 * 22 11 10 24 24 H 0.97005 * 120.00215 * 174.23426 * 1 2 3 25 25 H 1.09008 * 109.61608 * 355.55422 * 10 9 7 26 26 H 1.08992 * 109.62145 * 115.91917 * 10 9 7 27 27 H 1.08995 * 109.50059 * 61.49098 * 13 11 10 28 28 H 1.08999 * 109.49169 * 181.57841 * 13 11 10 29 29 H 1.09004 * 115.54943 * 34.42136 * 15 14 13 30 30 H 1.08999 * 117.49514 * 0.02562 * 16 15 14 31 31 H 1.08999 * 117.50313 * 145.02034 * 16 15 14 32 32 H 1.09000 * 117.49799 * 214.98266 * 17 15 14 33 33 H 1.09001 * 117.49390 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.50255 * 184.00204 * 18 14 13 35 35 H 1.08998 * 109.49989 * 304.10840 * 18 14 13 36 36 H 1.09001 * 109.61440 * 243.91969 * 21 9 7 37 37 H 1.08997 * 109.61173 * 4.44842 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 3.5477 1.4402 0.7000 6 1 1.4476 2.6527 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2290 -0.3140 9 7 1.3851 -2.3539 0.3966 10 6 0.3607 -2.3106 1.4475 11 6 0.7687 -3.2796 2.5702 12 1 -0.0139 -3.3613 3.3245 13 6 2.0827 -2.7746 3.1852 14 7 3.1109 -2.7004 2.1404 15 6 4.3187 -2.0280 2.6373 16 6 4.6489 -0.6504 2.0594 17 6 5.4888 -1.8677 1.6647 18 6 3.4336 -4.0214 1.5886 19 6 2.1940 -4.5946 0.8853 20 1 2.3902 -5.5914 0.4903 21 6 1.7329 -3.6344 -0.2319 22 6 1.0463 -4.6261 1.9150 23 8 0.4292 -5.6248 2.1980 24 1 -0.4851 -0.8358 -0.0844 25 1 0.2879 -1.2986 1.8461 26 1 -0.6016 -2.6108 1.0331 27 1 1.9271 -1.7846 3.6135 28 1 2.4068 -3.4625 3.9662 29 1 4.5568 -2.2038 3.6864 30 1 3.9696 -0.2428 1.3108 31 1 5.1045 0.0800 2.7281 32 1 6.4966 -1.9377 2.0740 33 1 5.3625 -2.2615 0.6562 34 1 4.2481 -3.9267 0.8705 35 1 3.7353 -4.6891 2.3957 36 1 0.8663 -4.0291 -0.7621 37 1 2.5567 -3.4872 -0.9304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260947895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:31 Heat of formation + Delta-G solvation = 41.917183 kcal Electronic energy + Delta-G solvation = -20280.162339 eV Core-core repulsion = 17445.844085 eV Total energy + Delta-G solvation = -2834.318255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09787 -37.68759 -36.15424 -34.02736 -32.37556 -31.22729 -28.90714 -25.85681 -24.76246 -22.75788 -22.14603 -21.41013 -21.18350 -20.12764 -17.74892 -17.18639 -16.10927 -14.98445 -14.84952 -14.60922 -14.46488 -14.08140 -13.87349 -13.57546 -13.30512 -13.09958 -12.48395 -12.02009 -11.89946 -11.49686 -11.23856 -11.06900 -10.95704 -10.70108 -10.53787 -10.38886 -10.27857 -9.99740 -9.78569 -9.53988 -9.18847 -8.65183 -8.33721 -7.58347 -6.58396 -5.90419 -3.13579 2.45297 3.51631 3.53826 3.68514 4.15862 4.26502 4.49225 4.65000 5.12787 5.16846 5.34444 5.36461 5.41626 5.51040 5.52523 5.58845 5.65218 5.77665 5.96960 5.99452 6.03700 6.10019 6.14238 6.22624 6.28191 6.32653 6.49895 6.58621 6.61260 6.82451 7.00733 7.10844 7.64595 7.68704 8.01845 8.17844 8.67361 9.19213 9.94131 10.38389 11.35458 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.012315 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.792556 B = 2273.110737 C = 3017.074477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.054 2.946 4 H -0.299 1.299 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.295 4.295 8 H 0.051 0.949 9 N -0.564 5.564 10 C 0.171 3.829 11 C -0.165 4.165 12 H 0.088 0.912 13 C 0.092 3.908 14 N -0.461 5.461 15 C 0.010 3.990 16 C -0.168 4.168 17 C -0.179 4.179 18 C 0.086 3.914 19 C -0.156 4.156 20 H 0.087 0.913 21 C 0.166 3.834 22 C 0.369 3.631 23 O -0.480 6.480 24 H 0.267 0.733 25 H 0.091 0.909 26 H 0.018 0.982 27 H 0.082 0.918 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -4.341 4.452 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.885 3.115 4 H -0.227 1.227 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.425 4.425 8 H 0.069 0.931 9 N -0.284 5.284 10 C 0.043 3.957 11 C -0.187 4.187 12 H 0.106 0.894 13 C -0.036 4.036 14 N -0.184 5.184 15 C -0.099 4.099 16 C -0.205 4.205 17 C -0.216 4.216 18 C -0.042 4.042 19 C -0.178 4.178 20 H 0.105 0.895 21 C 0.038 3.962 22 C 0.247 3.753 23 O -0.355 6.355 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.033 0.967 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.512 -2.895 4.283 9.119 hybrid contribution 0.558 -2.182 0.700 2.359 sum 8.070 -5.077 4.983 10.758 Atomic orbital electron populations 1.70752 1.06554 1.30222 1.49769 1.25716 0.96691 1.01140 0.99596 0.83796 0.75014 0.76433 0.76221 1.22696 1.20738 1.21714 1.19693 0.94024 0.86623 1.42163 0.93112 1.43681 1.44579 1.02981 1.37182 1.21021 0.90486 0.97715 0.86465 1.23200 0.98361 0.96290 1.00821 0.89360 1.21818 0.90557 1.00254 0.90994 1.61290 1.06303 1.18153 1.32680 1.22225 0.91818 1.01140 0.94670 1.23560 1.02461 0.90213 1.04301 1.22958 0.93996 1.04591 1.00102 1.21842 0.95924 0.88960 0.97439 1.23495 0.94826 1.00852 0.98605 0.89499 1.20976 0.97740 0.86160 0.91303 1.25829 0.81267 0.88627 0.79612 1.90301 1.48409 1.37833 1.58959 0.92159 0.89054 0.96360 0.89956 0.96657 0.90862 0.85003 0.90232 0.89887 0.88519 0.90155 0.96452 0.95839 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.60 12.49 55.49 0.69 -25.90 16 2 C -0.03 -0.82 4.78 -17.43 -0.08 -0.90 16 3 Si 1.05 23.76 28.90 -169.99 -4.91 18.85 16 4 H -0.30 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.28 -5.71 5.59 56.52 0.32 -5.40 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.29 -7.23 7.17 -15.06 -0.11 -7.34 16 8 H 0.05 1.27 7.27 -52.49 -0.38 0.89 16 9 N -0.56 -12.70 1.46 -171.39 -0.25 -12.95 16 10 C 0.17 3.77 4.00 -3.44 -0.01 3.76 16 11 C -0.17 -3.13 3.66 -90.24 -0.33 -3.46 16 12 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 13 C 0.09 1.61 4.89 -3.58 -0.02 1.60 16 14 N -0.46 -8.16 1.95 -226.09 -0.44 -8.60 16 15 C 0.01 0.16 5.30 -67.71 -0.36 -0.20 16 16 C -0.17 -2.81 10.46 -26.70 -0.28 -3.09 16 17 C -0.18 -2.62 9.66 -26.70 -0.26 -2.87 16 18 C 0.09 1.42 4.89 -3.58 -0.02 1.40 16 19 C -0.16 -2.74 3.70 -88.95 -0.33 -3.07 16 20 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 21 C 0.17 3.29 6.00 -3.15 -0.02 3.27 16 22 C 0.37 7.19 6.00 -26.46 -0.16 7.03 16 23 O -0.48 -10.31 17.98 6.00 0.11 -10.20 16 24 H 0.27 7.71 6.50 -40.82 -0.27 7.45 16 25 H 0.09 2.24 6.39 -51.92 -0.33 1.91 16 26 H 0.02 0.43 7.83 -51.93 -0.41 0.02 16 27 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.13 2.64 3.26 -51.93 -0.17 2.47 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.49 7.17 -51.93 -0.37 1.12 16 34 H 0.08 1.25 6.53 -51.93 -0.34 0.91 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -28.19 279.11 -7.93 -36.12 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.36 Total: 2.35 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.97 Total: -3.88 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.00 Total: -47.45 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.11 Total: -10.20 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.91 Total: 18.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.19 -7.93 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.033 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds