Wall clock time and date at job start Mon Mar 30 2020 03:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99811 * 2 1 4 4 H 1.48503 * 109.47358 * 240.00295 * 3 2 1 5 5 H 1.48500 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47420 * 120.00185 * 3 2 1 7 7 C 1.37873 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00296 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47416 * 300.00049 * 9 7 2 11 11 N 1.46909 * 109.46904 * 59.99836 * 9 7 2 12 12 C 1.50703 * 109.47315 * 179.97438 * 9 7 2 13 13 C 1.38450 * 119.90194 * 286.12560 * 12 9 7 14 14 C 1.38263 * 119.94580 * 179.74185 * 13 12 9 15 15 C 1.38598 * 119.98001 * 0.55042 * 14 13 12 16 16 C 1.38114 * 120.29507 * 359.70427 * 15 14 13 17 17 F 1.35093 * 120.09260 * 180.02562 * 16 15 14 18 18 C 1.38667 * 119.90189 * 106.39994 * 12 9 7 19 19 N 1.39836 * 120.12002 * 0.02562 * 18 12 9 20 20 C 1.51400 * 109.73735 * 180.33227 * 14 13 12 21 21 C 1.54345 * 105.17540 * 17.45158 * 20 14 13 22 22 C 1.51386 * 130.29664 * 0.63915 * 13 12 9 23 23 H 0.96999 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.00900 * 110.99605 * 52.71055 * 11 9 7 25 25 H 1.00897 * 110.99768 * 176.65984 * 11 9 7 26 26 H 1.07997 * 119.85039 * 179.73240 * 15 14 13 27 27 H 0.97001 * 120.00229 * 5.57660 * 19 18 12 28 28 H 0.97000 * 120.00207 * 185.57455 * 19 18 12 29 29 H 1.09005 * 110.30230 * 136.37281 * 20 14 13 30 30 H 1.08997 * 110.30343 * 258.52416 * 20 14 13 31 31 H 1.08999 * 110.82129 * 91.85467 * 21 20 14 32 32 H 1.08999 * 110.82077 * 215.20248 * 21 20 14 33 33 H 1.09006 * 110.45519 * 43.31248 * 22 13 12 34 34 H 1.08999 * 110.17520 * 281.24240 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8903 11 7 0.4069 -2.5772 -1.1993 12 6 2.2304 -3.6446 0.0005 13 6 2.9323 -3.9526 -1.1524 14 6 3.8349 -4.9999 -1.1520 15 6 4.0278 -5.7474 -0.0009 16 6 3.3262 -5.4476 1.1503 17 9 3.5178 -6.1786 2.2701 18 6 2.4216 -4.3906 1.1537 19 7 1.7073 -4.0821 2.3156 20 6 4.4725 -5.1260 -2.5194 21 6 4.1965 -3.7786 -3.2197 22 6 2.9091 -3.2977 -2.5171 23 1 -0.4850 0.8400 -0.0004 24 1 0.9481 -2.4075 -2.0338 25 1 -0.0673 -3.4663 -1.2505 26 1 4.7302 -6.5678 -0.0041 27 1 1.0189 -3.3990 2.2947 28 1 1.9001 -4.5512 3.1424 29 1 5.5460 -5.2889 -2.4226 30 1 4.0139 -5.9428 -3.0766 31 1 5.0149 -3.0789 -3.0501 32 1 4.0280 -3.9239 -4.2867 33 1 2.9148 -2.2121 -2.4189 34 1 2.0304 -3.6218 -3.0748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309572921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:01 Heat of formation + Delta-G solvation = -24.111116 kcal Electronic energy + Delta-G solvation = -18665.450568 eV Core-core repulsion = 15704.808807 eV Total energy + Delta-G solvation = -2960.641762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.30131 -39.73213 -36.18964 -34.45236 -32.61406 -31.63515 -29.14452 -27.39412 -26.74129 -25.65230 -23.09095 -20.91215 -20.32768 -19.56379 -17.35161 -16.37633 -16.22682 -15.66748 -15.24405 -14.88044 -14.72543 -14.39947 -14.12991 -13.69801 -12.95942 -12.66865 -12.51648 -12.15114 -12.02541 -11.71504 -11.42454 -11.04612 -10.93224 -10.80972 -10.75415 -10.63249 -10.44034 -9.76519 -9.60789 -9.20356 -8.46203 -7.83966 -7.09089 -6.77431 -5.91148 -4.05870 1.83400 2.02645 3.32368 3.37571 3.40551 4.19394 4.38090 4.47618 4.71029 5.01345 5.04322 5.32204 5.35778 5.47181 5.69300 5.72565 5.96197 6.06568 6.10286 6.21146 6.31890 6.36274 6.49207 6.54196 6.66618 6.71003 6.85342 7.13416 7.42269 7.55106 7.88094 8.02389 8.14108 8.31690 8.62271 9.01655 9.13123 9.62472 11.12328 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.008930 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.284198 B = 3134.678476 C = 3898.466078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.083 3.917 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.266 3.734 10 H 0.041 0.959 11 N -0.813 5.813 12 C -0.118 4.118 13 C -0.050 4.050 14 C -0.141 4.141 15 C -0.115 4.115 16 C 0.001 3.999 17 F -0.154 7.154 18 C 0.192 3.808 19 N -0.871 5.871 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.084 4.084 23 H 0.256 0.744 24 H 0.325 0.675 25 H 0.295 0.705 26 H 0.119 0.881 27 H 0.409 0.591 28 H 0.391 0.609 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -9.022 -2.692 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.124 4.124 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.156 3.844 10 H 0.058 0.942 11 N -0.340 5.340 12 C -0.125 4.125 13 C -0.052 4.052 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.023 4.023 17 F -0.133 7.133 18 C 0.086 3.914 19 N -0.413 5.413 20 C -0.105 4.105 21 C -0.158 4.158 22 C -0.121 4.121 23 H 0.066 0.934 24 H 0.139 0.861 25 H 0.105 0.895 26 H 0.137 0.863 27 H 0.242 0.758 28 H 0.219 0.781 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.975 -8.280 -2.372 9.946 hybrid contribution 1.063 -0.001 0.444 1.152 sum 6.038 -8.280 -1.928 10.428 Atomic orbital electron populations 1.70095 1.05566 1.25832 1.46644 1.24955 0.94647 0.98468 0.94331 0.86846 0.79760 0.83778 0.78602 1.20284 1.21384 1.20451 1.20795 0.92250 0.89331 1.54388 0.92852 1.17920 0.86994 0.88613 0.90869 0.94166 1.59311 1.34798 1.34579 1.05283 1.20719 1.02401 0.99232 0.90180 1.20085 0.95091 0.95159 0.94819 1.20074 1.01184 0.98323 0.94727 1.20001 1.01123 1.01201 0.91170 1.16932 1.05082 0.96190 0.84066 1.91358 1.94896 1.76525 1.50547 1.17484 0.92387 0.92568 0.88936 1.42472 1.43460 1.46597 1.08730 1.20864 0.99646 0.97935 0.92094 1.22294 0.98211 0.96369 0.98914 1.21121 0.97173 1.02123 0.91638 0.93366 0.86081 0.89511 0.86293 0.75850 0.78125 0.91688 0.91200 0.91242 0.91148 0.88752 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 12.77 55.43 0.71 -22.99 16 2 C 0.08 2.22 5.39 -17.82 -0.10 2.13 16 3 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -13.88 8.03 -34.44 -0.28 -14.15 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.27 6.27 2.67 -70.01 -0.19 6.08 16 10 H 0.04 1.02 5.81 -51.93 -0.30 0.72 16 11 N -0.81 -18.35 8.38 -6.64 -0.06 -18.41 16 12 C -0.12 -2.48 4.84 -104.38 -0.51 -2.99 16 13 C -0.05 -0.95 5.74 -104.20 -0.60 -1.55 16 14 C -0.14 -2.40 6.14 -104.14 -0.64 -3.04 16 15 C -0.12 -1.97 10.01 -39.49 -0.40 -2.37 16 16 C 0.00 0.02 7.31 -39.30 -0.29 -0.26 16 17 F -0.15 -2.73 16.66 2.25 0.04 -2.69 16 18 C 0.19 3.80 6.74 -83.72 -0.56 3.24 16 19 N -0.87 -15.44 9.00 32.44 0.29 -15.14 16 20 C -0.07 -0.92 6.77 -26.83 -0.18 -1.11 16 21 C -0.12 -1.63 7.08 -25.33 -0.18 -1.81 16 22 C -0.08 -1.40 4.70 -26.85 -0.13 -1.52 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.32 7.00 5.41 -39.29 -0.21 6.79 16 25 H 0.29 6.08 8.99 -39.29 -0.35 5.73 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.41 7.51 6.52 -40.82 -0.27 7.25 16 28 H 0.39 5.98 8.34 -40.82 -0.34 5.64 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.79 7.17 -51.93 -0.37 1.42 16 34 H 0.07 1.14 7.46 -51.93 -0.39 0.76 16 LS Contribution 279.45 15.07 4.21 4.21 Total: -1.00 -28.57 279.45 -7.75 -36.33 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -3.89 Total: 20.23 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -4.04 Total: -17.35 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.94 Total: -56.55 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.57 -7.75 -36.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309572921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.214 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds