Wall clock time and date at job start Mon Mar 30 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99736 * 2 1 4 4 C 1.53007 * 109.46871 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46965 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46917 * 180.02562 * 5 4 3 7 7 C 1.38369 * 120.00005 * 180.02562 * 6 5 4 8 8 C 1.39705 * 119.42976 * 359.72289 * 7 6 5 9 9 C 1.36569 * 119.49388 * 180.28372 * 8 7 6 10 10 C 1.41319 * 118.40483 * 359.97438 * 9 8 7 11 11 C 1.41200 * 120.56750 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00199 * 204.90340 * 11 10 9 13 13 C 1.39871 * 119.99885 * 24.90539 * 11 10 9 14 14 N 1.30900 * 120.00083 * 14.67502 * 13 11 10 15 15 Si 1.86806 * 119.99959 * 194.68101 * 13 11 10 16 16 H 1.48501 * 109.47207 * 89.99622 * 15 13 11 17 17 H 1.48498 * 109.47109 * 210.00016 * 15 13 11 18 18 H 1.48506 * 109.47007 * 329.99656 * 15 13 11 19 19 C 1.40752 * 118.86564 * 0.02562 * 10 9 8 20 20 C 1.50698 * 119.81945 * 180.02562 * 19 10 9 21 21 N 1.31489 * 120.36286 * 0.02562 * 19 10 9 22 22 H 1.09002 * 109.47225 * 59.99681 * 1 2 3 23 23 H 1.09006 * 109.47380 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47330 * 299.99796 * 1 2 3 25 25 H 1.08998 * 109.47533 * 60.00610 * 3 2 1 26 26 H 1.09001 * 109.47746 * 300.00043 * 3 2 1 27 27 H 1.09002 * 109.47270 * 59.99904 * 4 3 2 28 28 H 1.08996 * 109.46795 * 299.99899 * 4 3 2 29 29 H 1.09002 * 109.47482 * 59.99695 * 5 4 3 30 30 H 1.09004 * 109.46793 * 299.99206 * 5 4 3 31 31 H 0.97005 * 120.00076 * 359.97438 * 6 5 4 32 32 H 1.08006 * 120.25619 * 0.25468 * 8 7 6 33 33 H 1.07998 * 120.79425 * 179.97438 * 9 8 7 34 34 H 0.97008 * 119.99873 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47543 * 269.98135 * 20 19 10 36 36 H 1.09002 * 109.46468 * 29.98542 * 20 19 10 37 37 H 1.09004 * 109.47029 * 149.97638 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4667 -0.0012 7 6 6.4025 3.6066 -0.0004 8 6 5.7891 4.8618 -0.0042 9 6 6.5620 5.9878 -0.0093 10 6 7.9673 5.8386 -0.0099 11 6 8.8097 6.9717 -0.0156 12 1 9.8124 6.8973 -0.4100 13 6 8.3457 8.1907 0.4896 14 7 7.2603 8.2256 1.2205 15 14 9.2748 9.7689 0.1212 16 1 8.7498 10.3717 -1.1303 17 1 9.0939 10.7234 1.2442 18 1 10.7193 9.4660 -0.0432 19 6 8.5128 4.5411 -0.0058 20 6 10.0085 4.3571 -0.0058 21 7 7.7246 3.4887 -0.0021 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8567 0.6438 -0.8909 28 1 3.8574 0.6436 0.8891 29 1 3.8364 3.1228 0.8904 30 1 3.8358 3.1238 -0.8896 31 1 6.0353 1.5909 -0.0019 32 1 4.7120 4.9412 -0.0037 33 1 6.1100 6.9686 -0.0128 34 1 6.9387 9.0710 1.5712 35 1 10.3688 4.3090 -1.0334 36 1 10.4780 5.1979 0.5049 37 1 10.2607 3.4312 0.5114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309893031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:53 Heat of formation + Delta-G solvation = -27.009576 kcal Electronic energy + Delta-G solvation = -17519.015160 eV Core-core repulsion = 14681.708017 eV Total energy + Delta-G solvation = -2837.307143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.70725 -38.11582 -35.81488 -33.80438 -32.14416 -30.87339 -29.71541 -27.05522 -26.78127 -24.93225 -23.78490 -21.84996 -21.07354 -19.80211 -17.19368 -16.61897 -16.36964 -16.32707 -15.37372 -14.93902 -14.73358 -14.64416 -13.64680 -13.48671 -13.22691 -12.64918 -12.59929 -12.03186 -11.83135 -11.59941 -11.52898 -11.44159 -11.32082 -11.11994 -11.10909 -10.90479 -10.79322 -10.50849 -9.84800 -9.64296 -9.35242 -8.60935 -8.11694 -7.97110 -6.77604 -6.55009 -4.15674 2.76022 3.00300 3.10507 3.13680 3.32079 3.46519 3.97769 4.27941 4.73074 4.88903 4.97947 5.12389 5.16761 5.22243 5.39822 5.46986 5.54018 5.71688 5.75652 5.98245 6.18945 6.19660 6.42249 6.53842 6.59095 6.71812 6.83752 6.96342 7.08556 7.25634 7.42713 7.50906 7.79727 7.94071 8.30367 8.47773 8.69185 8.88506 8.96086 9.77173 10.27473 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003956 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.885026 B = 7075.404535 C = 7748.471260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.065 3.935 4 C -0.128 4.128 5 C 0.148 3.852 6 N -0.745 5.745 7 C 0.285 3.715 8 C -0.209 4.209 9 C -0.091 4.091 10 C 0.032 3.968 11 C -0.452 4.452 12 H 0.080 0.920 13 C 0.072 3.928 14 N -0.809 5.809 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.037 3.963 20 C -0.070 4.070 21 N -0.522 5.522 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.389 0.611 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.278 0.722 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -7.310 -1.651 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.012 4.012 4 C -0.166 4.166 5 C 0.022 3.978 6 N -0.385 5.385 7 C 0.052 3.948 8 C -0.233 4.233 9 C -0.118 4.118 10 C 0.026 3.974 11 C -0.483 4.483 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.436 5.436 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.101 4.101 20 C -0.128 4.128 21 N -0.238 5.238 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.223 0.777 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.986 -7.998 -1.508 12.124 hybrid contribution -0.291 1.586 -0.039 1.613 sum -9.277 -6.412 -1.547 11.383 Atomic orbital electron populations 1.22730 0.81105 1.02616 1.00023 1.87861 1.19649 1.28291 1.95460 1.22431 0.93780 0.84453 1.00565 1.21646 0.93099 0.98001 1.03843 1.20831 0.81393 0.94993 1.00607 1.43543 1.02731 1.05693 1.86508 1.17683 0.87637 0.85555 1.03928 1.20805 0.98530 0.92534 1.11460 1.21342 0.93749 0.97406 0.99289 1.18169 0.92670 0.92644 0.93868 1.19357 1.00318 0.92896 1.35756 0.90220 1.25864 0.94934 1.00787 0.92785 1.69810 1.21029 1.27958 1.24793 0.86310 0.80772 0.80861 0.78728 1.19508 1.20498 1.18671 1.20743 0.94098 0.88001 1.07308 1.20253 0.91446 1.00857 1.00240 1.66304 1.03210 1.35461 1.18842 0.94072 0.89744 0.94065 0.92948 0.92981 0.90653 0.90644 0.93102 0.93156 0.77721 0.88582 0.85283 0.91133 0.93420 0.91335 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.59 10.70 -35.23 -0.38 -4.97 16 3 C 0.06 0.70 5.94 37.16 0.22 0.92 16 4 C -0.13 -1.54 5.70 -26.73 -0.15 -1.70 16 5 C 0.15 2.19 4.87 -4.04 -0.02 2.17 16 6 N -0.74 -13.90 5.70 -60.35 -0.34 -14.25 16 7 C 0.28 6.64 7.64 -155.13 -1.19 5.46 16 8 C -0.21 -4.97 9.24 -39.64 -0.37 -5.33 16 9 C -0.09 -2.38 8.73 -39.01 -0.34 -2.72 16 10 C 0.03 0.85 5.59 -106.65 -0.60 0.25 16 11 C -0.45 -11.83 8.16 -37.85 -0.31 -12.14 16 12 H 0.08 1.99 6.84 -52.49 -0.36 1.63 16 13 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 14 N -0.81 -20.87 10.83 55.54 0.60 -20.26 16 15 Si 0.91 18.69 29.58 -169.99 -5.03 13.66 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 C 0.04 0.95 6.86 -81.79 -0.56 0.39 16 20 C -0.07 -1.52 9.58 36.00 0.34 -1.17 16 21 N -0.52 -13.05 10.29 -8.05 -0.08 -13.13 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 30 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 31 H 0.39 6.82 8.59 -40.82 -0.35 6.47 16 32 H 0.10 2.02 6.64 -52.48 -0.35 1.67 16 33 H 0.13 3.43 6.17 -52.49 -0.32 3.11 16 34 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.46 6.76 -51.93 -0.35 1.10 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -29.36 309.34 -8.00 -37.37 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.49 Total: 7.72 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.94 Total: -10.81 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.17 Total: -47.64 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.38 Total: -4.97 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.36 -8.00 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309893031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.359 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds