Wall clock time and date at job start Mon Mar 30 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99736 * 2 1 4 4 C 1.53007 * 109.46871 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46965 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46917 * 180.02562 * 5 4 3 7 7 C 1.38369 * 120.00005 * 180.02562 * 6 5 4 8 8 C 1.39705 * 119.42976 * 359.72289 * 7 6 5 9 9 C 1.36569 * 119.49388 * 180.28372 * 8 7 6 10 10 C 1.41319 * 118.40483 * 359.97438 * 9 8 7 11 11 C 1.41200 * 120.56750 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00199 * 204.90340 * 11 10 9 13 13 C 1.39871 * 119.99885 * 24.90539 * 11 10 9 14 14 N 1.30900 * 120.00083 * 14.67502 * 13 11 10 15 15 Si 1.86806 * 119.99959 * 194.68101 * 13 11 10 16 16 H 1.48501 * 109.47207 * 89.99622 * 15 13 11 17 17 H 1.48498 * 109.47109 * 210.00016 * 15 13 11 18 18 H 1.48506 * 109.47007 * 329.99656 * 15 13 11 19 19 C 1.40752 * 118.86564 * 0.02562 * 10 9 8 20 20 C 1.50698 * 119.81945 * 180.02562 * 19 10 9 21 21 N 1.31489 * 120.36286 * 0.02562 * 19 10 9 22 22 H 1.09002 * 109.47225 * 59.99681 * 1 2 3 23 23 H 1.09006 * 109.47380 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47330 * 299.99796 * 1 2 3 25 25 H 1.08998 * 109.47533 * 60.00610 * 3 2 1 26 26 H 1.09001 * 109.47746 * 300.00043 * 3 2 1 27 27 H 1.09002 * 109.47270 * 59.99904 * 4 3 2 28 28 H 1.08996 * 109.46795 * 299.99899 * 4 3 2 29 29 H 1.09002 * 109.47482 * 59.99695 * 5 4 3 30 30 H 1.09004 * 109.46793 * 299.99206 * 5 4 3 31 31 H 0.97005 * 120.00076 * 359.97438 * 6 5 4 32 32 H 1.08006 * 120.25619 * 0.25468 * 8 7 6 33 33 H 1.07998 * 120.79425 * 179.97438 * 9 8 7 34 34 H 0.97008 * 119.99873 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47543 * 269.98135 * 20 19 10 36 36 H 1.09002 * 109.46468 * 29.98542 * 20 19 10 37 37 H 1.09004 * 109.47029 * 149.97638 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4667 -0.0012 7 6 6.4025 3.6066 -0.0004 8 6 5.7891 4.8618 -0.0042 9 6 6.5620 5.9878 -0.0093 10 6 7.9673 5.8386 -0.0099 11 6 8.8097 6.9717 -0.0156 12 1 9.8124 6.8973 -0.4100 13 6 8.3457 8.1907 0.4896 14 7 7.2603 8.2256 1.2205 15 14 9.2748 9.7689 0.1212 16 1 8.7498 10.3717 -1.1303 17 1 9.0939 10.7234 1.2442 18 1 10.7193 9.4660 -0.0432 19 6 8.5128 4.5411 -0.0058 20 6 10.0085 4.3571 -0.0058 21 7 7.7246 3.4887 -0.0021 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8567 0.6438 -0.8909 28 1 3.8574 0.6436 0.8891 29 1 3.8364 3.1228 0.8904 30 1 3.8358 3.1238 -0.8896 31 1 6.0353 1.5909 -0.0019 32 1 4.7120 4.9412 -0.0037 33 1 6.1100 6.9686 -0.0128 34 1 6.9387 9.0710 1.5712 35 1 10.3688 4.3090 -1.0334 36 1 10.4780 5.1979 0.5049 37 1 10.2607 3.4312 0.5114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309893031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:53 Heat of formation + Delta-G solvation = -45.059930 kcal Electronic energy + Delta-G solvation = -17519.797882 eV Core-core repulsion = 14681.708017 eV Total energy + Delta-G solvation = -2838.089865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50930 -38.99741 -37.28641 -35.57366 -33.60541 -32.70276 -31.30660 -28.68927 -27.84437 -26.31394 -25.27242 -23.25245 -22.68725 -21.50546 -19.09717 -18.09036 -17.46374 -17.22606 -16.90317 -16.62657 -15.79717 -15.73796 -15.39599 -14.98954 -14.85053 -14.36848 -13.72845 -13.62701 -13.45092 -13.17674 -12.93129 -12.81642 -12.72470 -12.60569 -12.56467 -12.19716 -12.01622 -12.01428 -11.50275 -11.16865 -10.61963 -10.35848 -9.99800 -9.88829 -8.62000 -8.36081 -6.08562 0.89429 1.14740 1.43139 1.55361 1.58803 2.26390 2.43269 2.85302 3.04342 3.77149 3.98225 4.08994 4.17494 4.22292 4.49140 4.51778 4.54169 4.60246 4.62503 4.68029 4.72188 4.77669 4.86519 5.01503 5.06073 5.14138 5.15785 5.23124 5.40011 5.56572 5.68049 5.91866 6.03238 6.21589 6.51943 6.66039 6.87725 6.97634 7.16152 7.88942 8.44061 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003956 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.885026 B = 7075.404535 C = 7748.471260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.066 3.934 4 C -0.116 4.116 5 C 0.146 3.854 6 N -0.737 5.737 7 C 0.286 3.714 8 C -0.216 4.216 9 C -0.110 4.110 10 C -0.003 4.003 11 C -0.480 4.480 12 H 0.083 0.917 13 C 0.030 3.970 14 N -0.841 5.841 15 Si 0.981 3.019 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.257 1.257 19 C 0.021 3.979 20 C -0.064 4.064 21 N -0.538 5.538 22 H 0.050 0.950 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.284 0.716 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -7.606 -1.919 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.154 4.154 5 C 0.021 3.979 6 N -0.377 5.377 7 C 0.052 3.948 8 C -0.240 4.240 9 C -0.136 4.136 10 C -0.008 4.008 11 C -0.511 4.511 12 H 0.101 0.899 13 C -0.182 4.182 14 N -0.469 5.469 15 Si 0.803 3.197 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.180 1.180 19 C -0.117 4.117 20 C -0.121 4.121 21 N -0.255 5.255 22 H 0.069 0.931 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.558 -8.336 -1.777 12.806 hybrid contribution -0.248 1.535 0.053 1.556 sum -9.806 -6.801 -1.723 12.057 Atomic orbital electron populations 1.22936 0.79361 1.03860 1.00935 1.87815 1.21605 1.28608 1.95654 1.22395 0.92639 0.84561 1.01495 1.21493 0.94126 0.95970 1.03805 1.21006 0.79138 0.96981 1.00788 1.43698 1.04056 1.04652 1.85250 1.18060 0.87726 0.86921 1.02085 1.21009 0.99696 0.92157 1.11175 1.21375 0.94128 0.97673 1.00461 1.18525 0.93303 0.93694 0.95325 1.19578 1.00684 0.93802 1.37011 0.89933 1.26698 0.95786 1.03712 0.92019 1.69873 1.22439 1.29088 1.25479 0.85208 0.79492 0.76443 0.78589 1.19039 1.19799 1.18039 1.21301 0.95933 0.87840 1.06666 1.20241 0.89220 1.01359 1.01321 1.66445 1.03945 1.35274 1.19886 0.93102 0.88459 0.93189 0.92139 0.91976 0.90590 0.90791 0.93016 0.92660 0.76980 0.86167 0.86533 0.90540 0.91936 0.91484 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.91 10.70 -148.98 -1.59 -10.51 16 3 C 0.07 1.28 5.94 71.98 0.43 1.71 16 4 C -0.12 -2.58 5.70 30.60 0.17 -2.40 16 5 C 0.15 4.05 4.87 86.38 0.42 4.47 16 6 N -0.74 -26.53 5.70 -344.85 -1.97 -28.50 16 7 C 0.29 13.21 7.64 133.32 1.02 14.22 16 8 C -0.22 -10.25 9.24 22.23 0.21 -10.05 16 9 C -0.11 -5.84 8.73 22.64 0.20 -5.64 16 10 C 0.00 -0.18 5.59 -21.18 -0.12 -0.30 16 11 C -0.48 -25.49 8.16 23.39 0.19 -25.30 16 12 H 0.08 4.17 6.84 -2.91 -0.02 4.15 16 13 C 0.03 1.52 5.22 85.23 0.45 1.96 16 14 N -0.84 -44.05 10.83 21.82 0.24 -43.81 16 15 Si 0.98 38.24 29.58 68.60 2.03 40.27 16 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 19 C 0.02 1.07 6.86 43.22 0.30 1.36 16 20 C -0.06 -2.73 9.58 71.24 0.68 -2.05 16 21 N -0.54 -26.78 10.29 -179.37 -1.85 -28.62 16 22 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.46 7.91 -2.39 -0.02 1.44 16 30 H 0.06 1.52 7.90 -2.38 -0.02 1.50 16 31 H 0.40 13.30 8.59 -92.70 -0.80 12.50 16 32 H 0.12 4.95 6.64 -2.91 -0.02 4.93 16 33 H 0.12 6.40 6.17 -2.91 -0.02 6.38 16 34 H 0.28 13.55 8.30 -92.70 -0.77 12.78 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.84 6.76 -2.39 -0.02 2.83 16 37 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -62.79 309.34 2.32 -60.47 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.27 Total: 31.10 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.19 Total: -20.41 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.58 Total: -100.93 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.59 Total: -10.51 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -62.79 2.32 -60.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309893031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.412 kcal (2) G-P(sol) polarization free energy of solvation -62.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds