Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00110 * 2 1 4 4 C 1.34774 * 119.99791 * 179.72609 * 2 1 3 5 5 O 1.21522 * 119.99849 * 5.57324 * 4 2 1 6 6 C 1.48132 * 120.00142 * 185.57865 * 4 2 1 7 7 C 1.39241 * 120.04515 * 186.40222 * 6 4 2 8 8 N 1.32202 * 120.06033 * 179.97438 * 7 6 4 9 9 C 1.31921 * 120.16586 * 359.96921 * 8 7 6 10 10 C 1.39659 * 120.09579 * 0.02562 * 9 8 7 11 11 N 1.38976 * 120.03367 * 180.02562 * 10 9 8 12 12 C 1.46498 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.50705 * 109.47072 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00269 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99966 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99711 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00134 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47356 * 89.99244 * 17 15 13 19 19 H 1.48503 * 109.47246 * 209.99886 * 17 15 13 20 20 H 1.48510 * 109.46878 * 329.99466 * 17 15 13 21 21 N 1.32348 * 119.93730 * 359.76444 * 10 9 8 22 22 H 1.09002 * 109.47022 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47577 * 120.00201 * 1 2 3 24 24 H 1.09004 * 109.46813 * 240.00320 * 1 2 3 25 25 H 1.09000 * 109.47451 * 95.40160 * 3 2 1 26 26 H 1.09002 * 109.47055 * 215.40677 * 3 2 1 27 27 H 1.09003 * 109.47205 * 335.39989 * 3 2 1 28 28 H 1.08003 * 119.97375 * 359.96894 * 7 6 4 29 29 H 1.08004 * 119.95053 * 179.97438 * 9 8 7 30 30 H 0.96998 * 120.00376 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.47202 * 299.99509 * 12 11 10 32 32 H 1.09001 * 109.47696 * 59.99513 * 12 11 10 33 33 H 0.97009 * 119.99315 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0056 5 8 1.5355 -2.2176 -0.0916 6 6 3.6149 -1.1697 0.1303 7 6 4.3233 -2.3617 0.0027 8 7 5.6407 -2.3642 0.1135 9 6 6.2886 -1.2385 0.3444 10 6 5.5849 -0.0392 0.4735 11 7 6.2689 1.1460 0.7163 12 6 7.7289 1.1377 0.8364 13 6 8.2195 2.5387 1.0964 14 1 7.5143 3.3537 1.1656 15 6 9.5687 2.7799 1.2469 16 7 9.9968 4.0024 1.4742 17 14 10.7885 1.3701 1.1279 18 1 11.2268 1.2124 -0.2822 19 1 11.9671 1.6618 1.9830 20 1 10.1412 0.1153 1.5883 21 7 4.2664 -0.0314 0.3592 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5139 -0.8899 24 1 -0.3633 -0.5138 0.8901 25 1 2.4630 1.5350 1.0231 26 1 3.1046 1.1645 -0.5954 27 1 1.5700 2.0506 -0.4278 28 1 3.7961 -3.2850 -0.1868 29 1 7.3649 -1.2447 0.4347 30 1 5.7797 1.9788 0.8055 31 1 8.0218 0.4905 1.6633 32 1 8.1676 0.7653 -0.0893 33 1 10.9461 4.1721 1.5797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309954792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = 35.739569 kcal Electronic energy + Delta-G solvation = -17750.961422 eV Core-core repulsion = 14812.834942 eV Total energy + Delta-G solvation = -2938.126479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06206 -39.32611 -36.04879 -35.65939 -33.89712 -32.75573 -30.38354 -28.15040 -27.53889 -26.65908 -24.57647 -23.29830 -22.00122 -19.84571 -18.18713 -17.47615 -16.71449 -16.56132 -16.02692 -15.85036 -15.39369 -14.76645 -14.70458 -13.81985 -13.62706 -13.32314 -12.91512 -12.87368 -12.80705 -12.61758 -12.35864 -12.23079 -11.30641 -11.16231 -10.99354 -10.78756 -10.42095 -10.16590 -9.85829 -9.70238 -8.87953 -8.80158 -8.76796 -7.42215 -6.37113 -4.41819 0.66496 1.53032 2.78503 2.86618 3.11809 3.19104 3.20433 3.45152 4.04523 4.15210 4.26584 4.58674 4.73273 4.96495 4.96981 5.16301 5.30328 5.31306 5.42453 5.59488 5.62733 5.74890 6.05733 6.24219 6.36996 6.53752 6.69425 7.00138 7.10654 7.17339 7.67628 7.84708 8.01738 8.23245 8.24936 8.62950 9.19455 10.74762 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.035813 B = 0.005067 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.657068 B = 5524.988786 C = 6274.387813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.604 5.604 3 C 0.087 3.913 4 C 0.576 3.424 5 O -0.534 6.534 6 C 0.079 3.921 7 C 0.016 3.984 8 N -0.406 5.406 9 C 0.014 3.986 10 C 0.360 3.640 11 N -0.679 5.679 12 C 0.220 3.780 13 C -0.547 4.547 14 H 0.082 0.918 15 C 0.080 3.920 16 N -0.886 5.886 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 N -0.491 5.491 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.406 0.594 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -6.324 -2.804 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.337 5.337 3 C -0.055 4.055 4 C 0.362 3.638 5 O -0.410 6.410 6 C -0.063 4.063 7 C -0.145 4.145 8 N -0.118 5.118 9 C -0.159 4.159 10 C 0.115 3.885 11 N -0.306 5.306 12 C 0.098 3.902 13 C -0.584 4.584 14 H 0.100 0.900 15 C -0.125 4.125 16 N -0.523 5.523 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 N -0.219 5.219 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.243 0.757 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.787 -6.735 -2.807 14.723 hybrid contribution 0.623 0.006 0.079 0.628 sum -12.165 -6.730 -2.728 14.167 Atomic orbital electron populations 1.21679 0.78892 1.02430 1.02341 1.47650 1.06989 1.06963 1.72063 1.22213 0.97102 0.82876 1.03323 1.17857 0.85563 0.83515 0.76856 1.90765 1.68821 1.31211 1.50210 1.21612 0.94388 0.90700 0.99557 1.23137 0.90082 0.98380 1.02867 1.68333 1.08618 1.28096 1.06765 1.23455 1.01764 0.87551 1.03118 1.19679 0.88693 0.89310 0.90788 1.45122 1.08194 1.05322 1.72000 1.19742 0.74536 0.99653 0.96262 1.20937 0.93754 0.91661 1.52091 0.89997 1.24793 0.98058 0.95852 0.93779 1.69867 1.15633 1.19687 1.47065 0.86839 0.81253 0.82712 0.78922 1.19653 1.20647 1.18650 1.68387 1.07257 1.27727 1.18540 0.90485 0.91949 0.92081 0.91971 0.88625 0.92278 0.81249 0.81339 0.75748 0.95514 0.95961 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.17 59.85 0.61 1.46 16 2 N -0.60 -7.60 3.27 -190.53 -0.62 -8.22 16 3 C 0.09 0.99 9.11 59.84 0.55 1.53 16 4 C 0.58 8.75 7.65 -12.20 -0.09 8.66 16 5 O -0.53 -9.05 16.36 5.35 0.09 -8.96 16 6 C 0.08 1.25 6.56 -82.87 -0.54 0.71 16 7 C 0.02 0.25 10.76 -17.02 -0.18 0.07 16 8 N -0.41 -6.78 10.48 -12.54 -0.13 -6.91 16 9 C 0.01 0.23 10.49 -16.98 -0.18 0.05 16 10 C 0.36 6.15 7.66 -154.89 -1.19 4.97 16 11 N -0.68 -12.32 5.72 -61.47 -0.35 -12.68 16 12 C 0.22 4.57 3.72 -5.19 -0.02 4.55 16 13 C -0.55 -13.69 9.83 -34.44 -0.34 -14.03 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -24.85 13.96 55.43 0.77 -24.08 16 17 Si 0.88 19.21 27.47 -169.99 -4.67 14.54 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 21 N -0.49 -7.84 6.38 -8.81 -0.06 -7.90 16 22 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 26 H 0.10 1.24 5.78 -51.93 -0.30 0.94 16 27 H 0.06 0.51 7.81 -51.93 -0.41 0.11 16 28 H 0.17 2.41 7.65 -52.48 -0.40 2.01 16 29 H 0.17 2.69 6.72 -52.48 -0.35 2.34 16 30 H 0.41 7.12 8.45 -40.82 -0.34 6.77 16 31 H 0.03 0.56 6.99 -51.93 -0.36 0.20 16 32 H 0.02 0.46 7.37 -51.93 -0.38 0.08 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -28.55 284.76 -5.96 -34.50 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.79 Total: 5.46 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.49 Total: 9.95 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.39 Total: -59.78 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.54 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.55 -5.96 -34.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309954792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.242 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds