Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00110 * 2 1 4 4 C 1.34774 * 119.99791 * 179.72609 * 2 1 3 5 5 O 1.21522 * 119.99849 * 5.57324 * 4 2 1 6 6 C 1.48132 * 120.00142 * 185.57865 * 4 2 1 7 7 C 1.39241 * 120.04515 * 186.40222 * 6 4 2 8 8 N 1.32202 * 120.06033 * 179.97438 * 7 6 4 9 9 C 1.31921 * 120.16586 * 359.96921 * 8 7 6 10 10 C 1.39659 * 120.09579 * 0.02562 * 9 8 7 11 11 N 1.38976 * 120.03367 * 180.02562 * 10 9 8 12 12 C 1.46498 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.50705 * 109.47072 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00269 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99966 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99711 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00134 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47356 * 89.99244 * 17 15 13 19 19 H 1.48503 * 109.47246 * 209.99886 * 17 15 13 20 20 H 1.48510 * 109.46878 * 329.99466 * 17 15 13 21 21 N 1.32348 * 119.93730 * 359.76444 * 10 9 8 22 22 H 1.09002 * 109.47022 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47577 * 120.00201 * 1 2 3 24 24 H 1.09004 * 109.46813 * 240.00320 * 1 2 3 25 25 H 1.09000 * 109.47451 * 95.40160 * 3 2 1 26 26 H 1.09002 * 109.47055 * 215.40677 * 3 2 1 27 27 H 1.09003 * 109.47205 * 335.39989 * 3 2 1 28 28 H 1.08003 * 119.97375 * 359.96894 * 7 6 4 29 29 H 1.08004 * 119.95053 * 179.97438 * 9 8 7 30 30 H 0.96998 * 120.00376 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.47202 * 299.99509 * 12 11 10 32 32 H 1.09001 * 109.47696 * 59.99513 * 12 11 10 33 33 H 0.97009 * 119.99315 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0056 5 8 1.5355 -2.2176 -0.0916 6 6 3.6149 -1.1697 0.1303 7 6 4.3233 -2.3617 0.0027 8 7 5.6407 -2.3642 0.1135 9 6 6.2886 -1.2385 0.3444 10 6 5.5849 -0.0392 0.4735 11 7 6.2689 1.1460 0.7163 12 6 7.7289 1.1377 0.8364 13 6 8.2195 2.5387 1.0964 14 1 7.5143 3.3537 1.1656 15 6 9.5687 2.7799 1.2469 16 7 9.9968 4.0024 1.4742 17 14 10.7885 1.3701 1.1279 18 1 11.2268 1.2124 -0.2822 19 1 11.9671 1.6618 1.9830 20 1 10.1412 0.1153 1.5883 21 7 4.2664 -0.0314 0.3592 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5139 -0.8899 24 1 -0.3633 -0.5138 0.8901 25 1 2.4630 1.5350 1.0231 26 1 3.1046 1.1645 -0.5954 27 1 1.5700 2.0506 -0.4278 28 1 3.7961 -3.2850 -0.1868 29 1 7.3649 -1.2447 0.4347 30 1 5.7797 1.9788 0.8055 31 1 8.0218 0.4905 1.6633 32 1 8.1676 0.7653 -0.0893 33 1 10.9461 4.1721 1.5797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309954792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = 15.775112 kcal Electronic energy + Delta-G solvation = -17751.827146 eV Core-core repulsion = 14812.834942 eV Total energy + Delta-G solvation = -2938.992203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.32434 -40.49440 -37.47617 -36.78912 -35.24054 -34.56217 -31.83125 -29.19734 -29.03815 -27.75052 -25.77788 -24.75409 -23.54899 -21.03134 -19.72614 -18.82333 -18.16891 -17.80923 -17.16069 -17.00833 -16.75578 -16.47347 -15.97754 -15.27911 -14.82014 -14.72993 -14.51826 -14.10966 -13.84075 -13.75877 -13.47024 -13.06935 -12.95042 -12.82821 -12.42993 -12.00722 -11.88308 -11.67654 -11.58193 -11.24750 -10.80707 -10.05660 -9.78354 -8.80618 -8.35392 -6.44517 -0.59787 0.22080 1.41796 1.43188 1.52012 1.58455 1.81668 2.09635 2.32760 2.76463 3.00985 3.07872 3.31924 3.42535 3.88907 4.14141 4.31259 4.36172 4.46507 4.53800 4.61995 4.82636 4.88750 5.03036 5.10991 5.17508 5.29242 5.47468 5.60427 6.02647 6.12021 6.44571 6.52894 6.62564 6.84793 6.94333 7.21864 8.79810 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.035813 B = 0.005067 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.657068 B = 5524.988786 C = 6274.387813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.088 3.912 4 C 0.570 3.430 5 O -0.557 6.557 6 C 0.073 3.927 7 C 0.020 3.980 8 N -0.412 5.412 9 C 0.008 3.992 10 C 0.351 3.649 11 N -0.684 5.684 12 C 0.232 3.768 13 C -0.549 4.549 14 H 0.048 0.952 15 C 0.022 3.978 16 N -0.938 5.938 17 Si 0.941 3.059 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.236 1.236 21 N -0.480 5.480 22 H 0.109 0.891 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.179 0.821 30 H 0.407 0.593 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 -7.640 -3.180 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C -0.054 4.054 4 C 0.356 3.644 5 O -0.436 6.436 6 C -0.069 4.069 7 C -0.141 4.141 8 N -0.125 5.125 9 C -0.163 4.163 10 C 0.108 3.892 11 N -0.313 5.313 12 C 0.109 3.891 13 C -0.587 4.587 14 H 0.067 0.933 15 C -0.178 4.178 16 N -0.576 5.576 17 Si 0.764 3.236 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.159 1.159 21 N -0.208 5.208 22 H 0.127 0.873 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.201 0.799 29 H 0.196 0.804 30 H 0.243 0.757 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.591 -8.050 -3.189 16.115 hybrid contribution 0.683 0.464 0.179 0.844 sum -12.908 -7.587 -3.010 15.272 Atomic orbital electron populations 1.21917 0.76853 1.04631 1.02367 1.47811 1.08368 1.06501 1.70304 1.22225 0.97147 0.83080 1.02947 1.17831 0.85256 0.84086 0.77233 1.90751 1.69004 1.32069 1.51753 1.21843 0.95053 0.90581 0.99411 1.23429 0.89940 0.99038 1.01720 1.68376 1.09003 1.28023 1.07092 1.23618 1.02306 0.87405 1.02988 1.19680 0.89126 0.88957 0.91444 1.44817 1.07250 1.05851 1.73345 1.19466 0.75992 0.96842 0.96835 1.21217 0.93392 0.93086 1.51011 0.93334 1.25715 1.00261 0.98384 0.93467 1.70014 1.16123 1.22259 1.49246 0.85808 0.78447 0.80205 0.79176 1.18836 1.21060 1.15944 1.68440 1.06813 1.27863 1.17708 0.87255 0.91832 0.92133 0.92412 0.90328 0.89059 0.79858 0.80400 0.75694 0.94805 0.94855 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.17 127.77 1.30 2.68 16 2 N -0.60 -13.82 3.27 -875.02 -2.86 -16.68 16 3 C 0.09 1.80 9.11 127.77 1.16 2.97 16 4 C 0.57 16.51 7.65 86.87 0.66 17.18 16 5 O -0.56 -18.21 16.36 -3.79 -0.06 -18.28 16 6 C 0.07 2.21 6.56 41.82 0.27 2.48 16 7 C 0.02 0.59 10.76 84.88 0.91 1.50 16 8 N -0.41 -13.03 10.48 -193.60 -2.03 -15.06 16 9 C 0.01 0.26 10.49 85.02 0.89 1.15 16 10 C 0.35 11.54 7.66 133.22 1.02 12.56 16 11 N -0.68 -24.25 5.72 -348.39 -1.99 -26.24 16 12 C 0.23 9.31 3.72 85.64 0.32 9.63 16 13 C -0.55 -27.69 9.83 25.60 0.25 -27.44 16 14 H 0.05 2.70 7.84 -2.91 -0.02 2.68 16 15 C 0.02 1.13 5.47 84.66 0.46 1.59 16 16 N -0.94 -53.75 13.96 21.45 0.30 -53.46 16 17 Si 0.94 38.70 27.47 68.60 1.88 40.59 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.24 -8.68 6.54 99.48 0.65 -8.03 16 21 N -0.48 -14.74 6.38 -181.80 -1.16 -15.90 16 22 H 0.11 1.09 7.72 -2.39 -0.02 1.07 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.25 8.00 -2.39 -0.02 1.23 16 26 H 0.08 1.92 5.78 -2.39 -0.01 1.91 16 27 H 0.09 1.30 7.81 -2.39 -0.02 1.28 16 28 H 0.18 4.92 7.65 -2.91 -0.02 4.89 16 29 H 0.18 5.25 6.72 -2.91 -0.02 5.23 16 30 H 0.41 14.23 8.45 -92.71 -0.78 13.44 16 31 H 0.03 1.33 6.99 -2.38 -0.02 1.32 16 32 H 0.03 1.29 7.37 -2.39 -0.02 1.27 16 33 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -61.16 284.76 1.64 -59.52 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.30 Total: 21.22 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 7.26 Total: 24.29 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -7.75 Total: -127.34 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.06 Total: -18.28 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.88 Total: 40.59 kcal Total: -61.16 1.64 -59.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309954792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.293 kcal (2) G-P(sol) polarization free energy of solvation -61.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds