Wall clock time and date at job start Mon Mar 30 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86807 * 119.99782 * 2 1 4 4 H 1.48497 * 109.46849 * 269.99821 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00357 * 3 2 1 6 6 H 1.48500 * 109.47007 * 150.00246 * 3 2 1 7 7 C 1.40344 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99879 * 168.59837 * 7 2 1 9 9 C 1.40179 * 120.00477 * 348.59654 * 7 2 1 10 10 C 1.39065 * 119.74404 * 150.51981 * 9 7 2 11 11 C 1.42027 * 118.74247 * 180.02562 * 10 9 7 12 12 N 1.32201 * 120.83434 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00322 * 174.39500 * 12 11 10 14 14 H 1.08995 * 110.01203 * 354.98110 * 13 12 11 15 15 C 1.54266 * 110.03143 * 116.42018 * 13 12 11 16 16 C 1.54891 * 104.19334 * 95.67867 * 15 13 12 17 17 C 1.54887 * 102.75119 * 37.94150 * 16 15 13 18 18 C 1.53878 * 110.03513 * 233.58992 * 13 12 11 19 19 H 1.08996 * 110.02967 * 121.42604 * 18 13 12 20 20 F 1.39900 * 110.03005 * 359.97438 * 18 13 12 21 21 C 1.46917 * 118.33221 * 359.97438 * 11 10 9 22 22 C 1.34382 * 119.37070 * 0.27621 * 21 11 10 23 23 N 1.36422 * 121.21787 * 359.44398 * 22 21 11 24 24 H 0.96998 * 119.09614 * 180.29306 * 23 22 21 25 25 H 0.97004 * 120.00164 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.62933 * 0.04691 * 10 9 7 27 27 H 1.08999 * 110.48420 * 214.35688 * 15 13 12 28 28 H 1.08990 * 110.48904 * 336.99881 * 15 13 12 29 29 H 1.08996 * 110.75528 * 279.62182 * 16 15 13 30 30 H 1.09000 * 110.91344 * 156.33050 * 16 15 13 31 31 H 1.09002 * 110.49063 * 203.37831 * 17 16 15 32 32 H 1.09001 * 110.60316 * 80.78895 * 17 16 15 33 33 H 1.07999 * 120.31368 * 180.02562 * 21 11 10 34 34 H 1.07994 * 119.38931 * 179.72249 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.4873 2.0464 -1.4001 5 1 1.4373 2.6527 0.7001 6 1 3.5374 1.4403 0.7000 7 6 2.0076 -1.2154 -0.0005 8 1 3.0716 -1.2246 -0.1855 9 6 1.3275 -2.4176 0.2389 10 6 1.7923 -3.5984 -0.3299 11 6 1.0866 -4.8040 -0.0736 12 7 1.4923 -5.9501 -0.5928 13 6 0.8259 -7.2002 -0.2194 14 1 0.0842 -7.0102 0.5564 15 6 0.1500 -7.8284 -1.4557 16 6 1.1880 -8.8533 -1.9763 17 6 1.7806 -9.4342 -0.6684 18 6 1.8626 -8.2212 0.2812 19 1 1.6235 -8.5273 1.2996 20 9 3.1449 -7.6636 0.2359 21 6 -0.1049 -4.7457 0.7839 22 6 -0.4937 -3.5641 1.2925 23 7 0.2040 -2.4201 1.0364 24 1 -0.1018 -1.5847 1.4229 25 1 -0.4850 0.8401 0.0004 26 1 2.6734 -3.5987 -0.9543 27 1 -0.7737 -8.3321 -1.1707 28 1 -0.0467 -7.0675 -2.2108 29 1 1.9606 -8.3566 -2.5632 30 1 0.7034 -9.6350 -2.5613 31 1 2.7738 -9.8451 -0.8491 32 1 1.1221 -10.1982 -0.2552 33 1 -0.6654 -5.6432 1.0001 34 1 -1.3721 -3.5202 1.9192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382157432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:11 Heat of formation + Delta-G solvation = -37.669344 kcal Electronic energy + Delta-G solvation = -17895.062998 eV Core-core repulsion = 14933.833307 eV Total energy + Delta-G solvation = -2961.229690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.26818 -40.31385 -38.43647 -35.99860 -34.79050 -32.36878 -30.67555 -28.99681 -28.49111 -27.09104 -23.35511 -22.76375 -21.58531 -20.60214 -19.72723 -18.37057 -17.70999 -17.31374 -16.78926 -15.97327 -15.82676 -15.74287 -15.34545 -14.60782 -14.53706 -14.41550 -14.26685 -13.55020 -13.23495 -13.05969 -12.89744 -12.56776 -12.42816 -12.32589 -12.00762 -11.89702 -11.71531 -11.53073 -11.44214 -11.31150 -10.94175 -9.94119 -9.22977 -8.92719 -7.72142 -6.65119 0.96414 1.07913 1.42292 1.54096 1.60422 2.17357 2.55341 2.92941 3.41448 3.55977 3.74754 3.86475 4.01108 4.13702 4.36422 4.39847 4.52851 4.62536 4.69782 4.79002 4.93168 4.94368 5.03475 5.07760 5.10081 5.19338 5.24396 5.39794 5.45588 5.65427 5.86283 6.00032 6.10585 6.45500 6.54310 6.99855 7.18380 7.98125 8.09472 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.004938 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.821341 B = 5668.488151 C = 5915.825203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.050 3.950 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.256 1.256 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.092 0.908 9 C 0.326 3.674 10 C -0.395 4.395 11 C 0.261 3.739 12 N -0.680 5.680 13 C 0.044 3.956 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.135 4.135 18 C 0.081 3.919 19 H 0.088 0.912 20 F -0.228 7.228 21 C -0.321 4.321 22 C 0.139 3.861 23 N -0.599 5.599 24 H 0.418 0.582 25 H 0.304 0.696 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -5.622 3.750 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.167 4.167 3 Si 0.815 3.185 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.110 0.890 9 C 0.216 3.784 10 C -0.424 4.424 11 C 0.097 3.903 12 N -0.406 5.406 13 C -0.069 4.069 14 H 0.066 0.934 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.172 4.172 18 C 0.045 3.955 19 H 0.106 0.894 20 F -0.209 7.209 21 C -0.350 4.350 22 C 0.010 3.990 23 N -0.208 5.208 24 H 0.257 0.743 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.174 -5.993 3.157 7.957 hybrid contribution -0.235 1.096 0.353 1.176 sum -4.408 -4.897 3.510 7.465 Atomic orbital electron populations 1.69352 1.08592 1.32435 1.35402 1.26844 0.95756 1.04510 0.89566 0.84981 0.79046 0.74944 0.79545 1.19192 1.18002 1.18365 1.19662 0.97491 0.90251 1.46074 0.89003 1.17714 0.82404 0.93958 0.84314 1.20196 1.10018 0.91457 1.20731 1.20468 0.89396 0.92835 0.87552 1.73345 1.36018 0.96702 1.34557 1.22699 0.94262 0.93230 0.96686 0.93424 1.22424 0.98333 0.97607 0.96535 1.22361 0.97708 0.97856 0.96991 1.22921 1.02889 0.96106 0.95320 1.22629 0.78482 0.93635 1.00789 0.89397 1.92737 1.42318 1.87905 1.97925 1.22377 1.03681 0.98001 1.10987 1.21954 0.95389 0.85724 0.95943 1.42046 1.25219 1.10360 1.43214 0.74259 0.88438 0.90054 0.89538 0.94295 0.93978 0.88821 0.90585 0.87104 0.84488 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -35.82 11.24 21.89 0.25 -35.57 16 2 C 0.05 2.19 5.23 85.39 0.45 2.63 16 3 Si 0.99 33.34 29.58 68.60 2.03 35.37 16 4 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.26 -7.81 7.11 99.48 0.71 -7.10 16 6 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 7 C -0.50 -24.91 9.03 23.25 0.21 -24.70 16 8 H 0.09 4.58 7.88 -2.91 -0.02 4.55 16 9 C 0.33 16.69 6.29 38.88 0.24 16.93 16 10 C -0.39 -22.01 9.83 23.41 0.23 -21.78 16 11 C 0.26 13.60 6.80 42.30 0.29 13.89 16 12 N -0.68 -34.95 9.36 -311.19 -2.91 -37.86 16 13 C 0.04 1.76 3.46 45.72 0.16 1.92 16 14 H 0.05 1.83 5.34 -2.39 -0.01 1.82 16 15 C -0.11 -3.76 6.54 31.67 0.21 -3.56 16 16 C -0.11 -3.30 6.91 31.88 0.22 -3.08 16 17 C -0.13 -3.64 6.62 31.67 0.21 -3.43 16 18 C 0.08 2.91 4.68 31.32 0.15 3.06 16 19 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 20 F -0.23 -10.34 16.18 44.97 0.73 -9.62 16 21 C -0.32 -13.68 9.36 23.66 0.22 -13.46 16 22 C 0.14 5.25 11.15 83.10 0.93 6.18 16 23 N -0.60 -25.99 4.83 -188.19 -0.91 -26.90 16 24 H 0.42 16.92 6.66 -92.71 -0.62 16.31 16 25 H 0.30 11.57 8.29 -92.70 -0.77 10.80 16 26 H 0.08 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.00 8.11 -2.39 -0.02 1.98 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.14 5.11 5.97 -2.91 -0.02 5.09 16 34 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -64.34 285.51 3.19 -61.15 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.50 Total: 38.83 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.51 Total: -25.40 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.57 Total: -100.33 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 0.73 Total: -9.62 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.37 kcal Total: -64.34 3.19 -61.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382157432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.477 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds