Wall clock time and date at job start Mon Mar 30 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42896 * 109.57372 * 305.47306 * 3 2 1 5 5 C 1.53121 * 109.52047 * 185.31627 * 3 2 1 6 6 C 1.53036 * 109.27850 * 297.74793 * 5 3 2 7 7 N 1.46846 * 109.52259 * 300.82302 * 6 5 3 8 8 C 1.46903 * 110.99910 * 185.83781 * 7 6 5 9 9 C 1.53005 * 109.46978 * 160.19610 * 8 7 6 10 10 C 1.50697 * 115.55212 * 61.03606 * 9 8 7 11 11 H 1.07994 * 119.99818 * 232.64658 * 10 9 8 12 12 C 1.37878 * 119.99942 * 52.63738 * 10 9 8 13 13 N 1.31508 * 120.00091 * 6.66922 * 12 10 9 14 14 Si 1.86796 * 119.99926 * 186.94151 * 12 10 9 15 15 H 1.48497 * 109.47432 * 90.00419 * 14 12 10 16 16 H 1.48504 * 109.47008 * 210.00607 * 14 12 10 17 17 H 1.48498 * 109.47158 * 330.00257 * 14 12 10 18 18 C 1.53002 * 117.49595 * 206.70254 * 9 8 7 19 19 C 1.53001 * 117.49642 * 275.36442 * 9 8 7 20 20 C 1.46847 * 111.20161 * 61.74463 * 7 6 5 21 21 C 1.53044 * 109.51859 * 298.25828 * 20 7 6 22 22 H 0.96707 * 114.00041 * 59.84206 * 4 3 2 23 23 H 1.08996 * 109.49916 * 177.80783 * 5 3 2 24 24 H 1.08996 * 109.50240 * 57.68969 * 5 3 2 25 25 H 1.08995 * 109.46634 * 180.80560 * 6 5 3 26 26 H 1.09001 * 109.45409 * 60.82898 * 6 5 3 27 27 H 1.09001 * 109.46900 * 40.20044 * 8 7 6 28 28 H 1.08993 * 109.47580 * 280.19632 * 8 7 6 29 29 H 0.96998 * 120.00429 * 184.97989 * 13 12 10 30 30 H 1.08999 * 117.49535 * 214.99680 * 18 9 8 31 31 H 1.09001 * 117.50360 * 0.03124 * 18 9 8 32 32 H 1.09003 * 117.50196 * 359.97438 * 19 9 8 33 33 H 1.09002 * 117.49722 * 144.97816 * 19 9 8 34 34 H 1.09001 * 109.46470 * 58.26828 * 20 7 6 35 35 H 1.08999 * 109.46643 * 178.24511 * 20 7 6 36 36 H 1.09000 * 109.49881 * 299.23581 * 21 20 7 37 37 H 1.08999 * 109.50330 * 179.12208 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0871 -0.7805 1.0965 5 6 3.1190 1.4379 0.1337 6 6 2.6536 2.2541 -1.0743 7 7 3.1698 1.6446 -2.3066 8 6 2.8592 2.4778 -3.4760 9 6 3.7946 2.1076 -4.6288 10 6 3.6998 0.6830 -5.1110 11 1 4.5905 0.0765 -5.1820 12 6 2.4757 0.1538 -5.4612 13 7 1.4123 0.9264 -5.5007 14 14 2.3264 -1.6623 -5.8722 15 1 2.0241 -2.4265 -4.6354 16 1 1.2313 -1.8588 -6.8557 17 1 3.6053 -2.1453 -6.4523 18 6 4.0936 3.1875 -5.6706 19 6 5.1708 2.7752 -4.6641 20 6 2.6545 0.2806 -2.4806 21 6 3.1200 -0.5945 -1.3146 22 1 2.8011 -1.7041 1.0761 23 1 4.2083 1.4346 0.1728 24 1 2.7228 1.8814 1.0471 25 1 3.0278 3.2742 -0.9893 26 1 1.5641 2.2682 -1.1049 27 1 2.9961 3.5285 -3.2201 28 1 1.8257 2.3091 -3.7782 29 1 0.5394 0.5416 -5.6761 30 1 4.2218 2.8675 -6.7046 31 1 3.6244 4.1619 -5.5344 32 1 5.4097 3.4785 -3.8663 33 1 6.0077 2.1838 -5.0357 34 1 1.5650 0.3041 -2.5046 35 1 3.0295 -0.1326 -3.4170 36 1 4.2093 -0.6297 -1.2983 37 1 2.7245 -1.6030 -1.4359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709377193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:02 Heat of formation + Delta-G solvation = 14.062502 kcal Electronic energy + Delta-G solvation = -19352.537656 eV Core-core repulsion = 16517.011532 eV Total energy + Delta-G solvation = -2835.526124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62373 -37.25270 -35.67146 -35.38896 -32.35009 -31.41546 -30.46830 -26.07543 -25.60859 -22.99314 -22.69808 -21.09640 -20.57224 -19.03304 -18.02580 -16.32453 -15.95663 -15.13751 -14.79427 -14.53951 -14.25123 -13.86637 -13.65205 -13.33831 -13.11724 -12.71210 -12.30592 -12.09022 -12.01342 -11.82235 -11.52192 -11.23386 -10.99978 -10.84899 -10.79147 -10.62107 -10.47677 -10.31416 -10.17877 -9.75633 -9.36003 -8.91173 -8.56688 -8.06481 -7.34010 -6.13552 -4.11824 2.73965 2.83494 3.18024 3.29156 3.30258 3.89161 4.15837 4.27735 4.65837 4.92910 4.94961 5.06727 5.52687 5.55978 5.68973 5.79099 5.94809 5.98650 6.04149 6.13515 6.25112 6.31779 6.39267 6.60903 6.67853 6.79469 6.80119 7.00074 7.15575 7.28192 7.39890 7.41921 7.45051 7.59771 7.79200 8.06884 8.13058 8.42507 8.82366 9.40298 10.90325 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.009441 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.998781 B = 2965.191680 C = 3692.611692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.187 3.813 3 C 0.231 3.769 4 O -0.542 6.542 5 C -0.093 4.093 6 C 0.049 3.951 7 N -0.517 5.517 8 C 0.094 3.906 9 C 0.061 3.939 10 C -0.475 4.475 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.874 5.874 14 Si 0.873 3.127 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.270 1.270 18 C -0.194 4.194 19 C -0.198 4.198 20 C 0.034 3.966 21 C -0.137 4.137 22 H 0.381 0.619 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.018 0.982 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -1.101 8.758 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.132 4.132 3 C 0.187 3.813 4 O -0.346 6.346 5 C -0.132 4.132 6 C -0.080 4.080 7 N -0.241 5.241 8 C -0.033 4.033 9 C 0.061 3.939 10 C -0.513 4.513 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.511 5.511 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.232 4.232 19 C -0.235 4.235 20 C -0.093 4.093 21 C -0.176 4.176 22 H 0.230 0.770 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.676 -0.563 8.881 9.292 hybrid contribution -1.087 -1.387 -0.440 1.816 sum 1.590 -1.949 8.441 8.807 Atomic orbital electron populations 1.81116 1.13284 1.07570 1.08022 1.30281 0.96169 0.93690 0.93075 1.18965 0.78653 0.94944 0.88764 1.86636 1.75241 1.25702 1.47059 1.21553 1.03311 0.89761 0.98541 1.22121 0.96882 0.98154 0.90847 1.61842 1.58559 1.02388 1.01360 1.21593 1.00941 0.92351 0.88378 1.18753 0.90525 0.92343 0.92326 1.20487 0.93369 0.95488 1.41954 0.91904 1.24959 0.96236 0.97427 0.94793 1.69944 0.98872 1.34178 1.48124 0.86882 0.78279 0.86076 0.78747 1.20176 1.21108 1.19421 1.22858 1.04593 0.99613 0.96159 1.22786 0.94227 1.04752 1.01730 1.22883 0.96555 0.88995 1.00895 1.22426 1.03498 0.99167 0.92542 0.77048 0.88310 0.90951 0.90326 0.96018 0.94620 0.91208 0.92882 0.90537 0.92051 0.91463 0.90914 0.96423 0.83708 0.88256 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.85 18.54 42.15 0.78 -7.07 16 2 C 0.19 3.08 11.95 -20.76 -0.25 2.83 16 3 C 0.23 3.27 1.10 -93.28 -0.10 3.16 16 4 O -0.54 -6.46 12.96 -35.23 -0.46 -6.91 16 5 C -0.09 -1.28 5.23 -26.65 -0.14 -1.42 16 6 C 0.05 0.80 5.22 -3.83 -0.02 0.78 16 7 N -0.52 -10.00 4.59 -234.66 -1.08 -11.08 16 8 C 0.09 2.07 4.77 -3.82 -0.02 2.05 16 9 C 0.06 1.42 1.76 -155.66 -0.27 1.14 16 10 C -0.48 -11.80 6.58 -34.44 -0.23 -12.03 16 11 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 12 C 0.07 1.72 3.68 -17.82 -0.07 1.66 16 13 N -0.87 -23.09 11.49 55.43 0.64 -22.45 16 14 Si 0.87 19.58 29.00 -169.99 -4.93 14.65 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 C -0.19 -4.29 9.94 -26.69 -0.27 -4.56 16 19 C -0.20 -4.12 9.95 -26.69 -0.27 -4.39 16 20 C 0.03 0.67 4.52 -3.83 -0.02 0.65 16 21 C -0.14 -2.13 5.20 -26.65 -0.14 -2.26 16 22 H 0.38 3.11 9.03 45.56 0.41 3.53 16 23 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 26 H 0.02 0.39 7.31 -51.93 -0.38 0.01 16 27 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 28 H 0.07 1.74 6.19 -51.93 -0.32 1.42 16 29 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 30 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.02 0.39 7.31 -51.93 -0.38 0.01 16 35 H 0.15 3.26 3.04 -51.93 -0.16 3.11 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -27.43 297.66 -6.91 -34.34 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.57 Total: 6.42 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.78 Total: -12.38 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.34 Total: -40.60 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.46 Total: -6.91 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.93 Total: 14.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.43 -6.91 -34.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709377193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.404 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds