Wall clock time and date at job start Mon Mar 30 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47242 * 2 1 4 4 N 1.46496 * 109.47201 * 120.00113 * 2 1 3 5 5 C 1.38699 * 125.98499 * 296.96940 * 4 2 1 6 6 C 1.32862 * 107.91510 * 179.82451 * 5 4 2 7 7 N 1.38697 * 107.91483 * 0.43223 * 6 5 4 8 8 C 1.46497 * 125.98347 * 179.68550 * 7 6 5 9 9 C 1.53003 * 109.47509 * 264.69078 * 8 7 6 10 10 C 1.50701 * 115.54690 * 39.70666 * 9 8 7 11 11 H 1.08003 * 119.99949 * 269.60735 * 10 9 8 12 12 C 1.37876 * 119.99992 * 89.60518 * 10 9 8 13 13 N 1.31514 * 119.99859 * 178.17366 * 12 10 9 14 14 Si 1.86798 * 120.00157 * 358.18039 * 12 10 9 15 15 H 1.48508 * 109.47237 * 88.01552 * 14 12 10 16 16 H 1.48504 * 109.47316 * 208.01463 * 14 12 10 17 17 H 1.48502 * 109.47141 * 328.01699 * 14 12 10 18 18 C 1.52998 * 117.49820 * 253.99854 * 9 8 7 19 19 C 1.52995 * 117.49899 * 185.37267 * 9 8 7 20 20 C 1.34755 * 108.03240 * 359.72529 * 7 6 5 21 21 O 1.21788 * 125.94801 * 180.02562 * 20 7 6 22 22 H 1.09002 * 109.46894 * 300.00101 * 1 2 3 23 23 H 1.08996 * 109.47511 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47312 * 59.99859 * 1 2 3 25 25 H 1.09002 * 109.46894 * 239.99898 * 2 1 3 26 26 H 1.09001 * 109.46584 * 63.12428 * 3 2 1 27 27 H 1.09001 * 109.46842 * 183.12379 * 3 2 1 28 28 H 1.09004 * 109.46884 * 303.11998 * 3 2 1 29 29 H 1.08000 * 126.04198 * 359.97438 * 5 4 2 30 30 H 1.07998 * 126.04407 * 180.15654 * 6 5 4 31 31 H 1.09005 * 109.47214 * 24.68961 * 8 7 6 32 32 H 1.08999 * 109.47152 * 144.69022 * 8 7 6 33 33 H 0.97007 * 120.00232 * 179.97438 * 13 12 10 34 34 H 1.08991 * 117.49939 * 0.02562 * 18 9 8 35 35 H 1.09002 * 117.49303 * 145.02009 * 18 9 8 36 36 H 1.09004 * 117.50234 * 214.97399 * 19 9 8 37 37 H 1.09005 * 117.50406 * 0.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.8101 -0.2934 2.5086 6 6 2.4041 -1.1779 3.3024 7 7 3.0021 -2.1377 2.4995 8 6 3.7705 -3.2940 2.9672 9 6 5.2616 -2.9510 2.9635 10 6 5.6093 -1.5587 3.4238 11 1 5.6668 -0.7519 2.7081 12 6 5.8540 -1.3150 4.7586 13 7 6.1926 -0.1076 5.1552 14 14 5.7048 -2.6995 6.0036 15 1 7.0029 -3.4132 6.1083 16 1 5.3412 -2.1366 7.3288 17 1 4.6517 -3.6496 5.5635 18 6 6.1256 -3.5678 1.8617 19 6 6.2454 -4.0730 3.3010 20 6 2.7534 -1.8199 1.2138 21 8 3.1274 -2.4448 0.2376 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.7231 1.9399 0.9167 27 1 3.1286 1.4430 -0.0560 28 1 1.6317 1.9723 -0.8607 29 1 1.2601 0.5792 2.8288 30 1 2.4222 -1.1514 4.3819 31 1 3.4595 -3.5514 3.9797 32 1 3.5910 -4.1413 2.3055 33 1 6.3644 0.0640 6.0944 34 1 5.6317 -4.2175 1.1393 35 1 6.9458 -2.9664 1.4695 36 1 7.1445 -3.8041 3.8555 37 1 5.8305 -5.0557 3.5253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124750230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:53 Heat of formation + Delta-G solvation = 25.096025 kcal Electronic energy + Delta-G solvation = -19184.603768 eV Core-core repulsion = 16349.556093 eV Total energy + Delta-G solvation = -2835.047675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.02201 -38.96528 -37.65381 -36.95571 -34.21467 -33.21012 -29.73626 -28.29935 -28.10324 -27.22099 -23.77939 -23.34855 -22.33851 -20.95399 -20.75547 -18.66604 -17.88550 -17.10646 -16.95806 -16.36663 -15.90204 -15.53186 -15.27106 -15.00672 -14.76602 -14.63016 -14.17563 -14.07621 -13.43159 -13.15277 -13.10375 -13.02560 -12.68552 -12.49323 -12.38685 -12.15701 -11.93693 -11.92298 -11.62972 -11.24382 -10.95452 -10.75832 -10.37437 -10.30906 -8.43810 -8.23145 -6.30655 1.40159 1.42243 1.48107 1.55063 1.63840 2.10139 2.40601 2.78273 3.09703 3.18981 3.75285 4.02687 4.11252 4.14342 4.21707 4.34656 4.37287 4.46199 4.56528 4.61219 4.74202 4.76774 4.80048 4.88937 4.92397 4.96758 5.02352 5.17812 5.23419 5.31781 5.37850 5.44241 5.67902 5.78037 6.21131 6.35353 6.71958 6.73848 7.36745 7.52046 8.92643 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.007975 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.839410 B = 3510.043896 C = 3918.459704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 C -0.153 4.153 4 N -0.526 5.526 5 C -0.025 4.025 6 C 0.003 3.997 7 N -0.507 5.507 8 C 0.164 3.836 9 C -0.042 4.042 10 C -0.467 4.467 11 H 0.010 0.990 12 C 0.031 3.969 13 N -0.945 5.945 14 Si 0.940 3.060 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.228 1.228 18 C -0.174 4.174 19 C -0.178 4.178 20 C 0.624 3.376 21 O -0.633 6.633 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.211 0.789 30 H 0.183 0.817 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.266 0.734 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.059 -0.916 -2.990 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 C -0.211 4.211 4 N -0.246 5.246 5 C -0.147 4.147 6 C -0.121 4.121 7 N -0.221 5.221 8 C 0.041 3.959 9 C -0.044 4.044 10 C -0.504 4.504 11 H 0.028 0.972 12 C -0.167 4.167 13 N -0.584 5.584 14 Si 0.765 3.235 15 H -0.201 1.201 16 H -0.221 1.221 17 H -0.150 1.150 18 C -0.212 4.212 19 C -0.216 4.216 20 C 0.327 3.673 21 O -0.518 6.518 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.228 0.772 30 H 0.200 0.800 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.764 -1.253 -3.552 13.308 hybrid contribution 0.858 -0.095 0.575 1.037 sum -11.906 -1.348 -2.977 12.346 Atomic orbital electron populations 1.22071 0.91276 1.02450 1.04593 1.21332 0.96512 0.93384 0.84789 1.22115 1.00336 0.94049 1.04572 1.45602 1.48169 1.22980 1.07864 1.21991 1.08777 1.02953 0.80962 1.22018 0.99933 0.91699 0.98445 1.45108 1.46382 1.24978 1.05680 1.21323 0.89939 0.84678 0.99914 1.19806 0.89891 0.93274 1.01405 1.19945 1.46714 0.91192 0.92565 0.97162 1.25716 0.93462 0.97682 0.99810 1.70053 1.48375 1.23125 1.16828 0.85915 0.80361 0.80019 0.77236 1.20066 1.22136 1.15037 1.22784 1.03209 1.03719 0.91457 1.23023 1.01729 0.98516 0.98284 1.16534 0.83280 0.83679 0.83817 1.90867 1.63500 1.59860 1.37565 0.90368 0.93434 0.88486 0.90625 0.90641 0.95011 0.88009 0.77204 0.80008 0.88232 0.90677 0.92544 0.89280 0.91687 0.90293 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.29 71.98 0.67 -2.08 16 2 C 0.14 3.85 3.56 44.99 0.16 4.01 16 3 C -0.15 -3.54 9.25 71.98 0.67 -2.88 16 4 N -0.53 -18.50 2.63 -633.61 -1.66 -20.17 16 5 C -0.02 -0.77 10.44 82.43 0.86 0.09 16 6 C 0.00 0.10 10.97 82.43 0.90 1.00 16 7 N -0.51 -21.29 2.25 -656.21 -1.48 -22.77 16 8 C 0.16 6.69 5.97 86.38 0.52 7.21 16 9 C -0.04 -1.96 1.24 -52.93 -0.07 -2.03 16 10 C -0.47 -26.17 8.33 25.60 0.21 -25.96 16 11 H 0.01 0.68 8.06 -2.91 -0.02 0.65 16 12 C 0.03 1.71 5.47 84.65 0.46 2.17 16 13 N -0.94 -56.52 13.96 21.45 0.30 -56.22 16 14 Si 0.94 41.29 24.91 68.60 1.71 43.00 16 15 H -0.27 -11.95 7.03 99.48 0.70 -11.25 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.23 -8.66 5.59 99.48 0.56 -8.10 16 18 C -0.17 -7.74 9.88 30.60 0.30 -7.44 16 19 C -0.18 -7.23 7.58 30.59 0.23 -7.00 16 20 C 0.62 27.83 8.52 179.07 1.53 29.36 16 21 O -0.63 -32.47 17.46 -4.63 -0.08 -32.55 16 22 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 2.37 7.73 -2.39 -0.02 2.35 16 26 H 0.07 1.56 7.77 -2.39 -0.02 1.54 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.21 4.47 8.04 -2.91 -0.02 4.44 16 30 H 0.18 5.89 8.06 -2.91 -0.02 5.87 16 31 H 0.10 3.62 6.53 -2.38 -0.02 3.60 16 32 H 0.07 2.92 7.95 -2.39 -0.02 2.90 16 33 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 34 H 0.09 3.70 8.08 -2.39 -0.02 3.68 16 35 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.08 3.39 6.96 -2.38 -0.02 3.37 16 37 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 Total: -1.00 -74.57 305.76 6.11 -68.46 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.88 Total: 23.78 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 6.45 Total: -3.53 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -2.84 Total: -99.15 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.08 Total: -32.55 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.71 Total: 43.00 kcal Total: -74.57 6.11 -68.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124750230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.553 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds