Wall clock time and date at job start Mon Mar 30 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47506 * 2 1 4 4 C 1.53004 * 109.47079 * 240.00106 * 2 1 3 5 5 O 1.42902 * 109.47001 * 60.00025 * 4 2 1 6 6 N 1.46505 * 109.47031 * 120.00340 * 2 1 3 7 7 C 1.39850 * 119.99780 * 305.49196 * 6 2 1 8 8 C 1.39606 * 119.84403 * 352.31563 * 7 6 2 9 9 C 1.38051 * 120.55189 * 180.29910 * 8 7 6 10 10 C 1.38739 * 120.21679 * 359.44353 * 9 8 7 11 11 N 1.38869 * 120.16254 * 180.25191 * 10 9 8 12 12 C 1.41553 * 119.67688 * 0.27896 * 10 9 8 13 13 C 1.41030 * 120.26693 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00011 * 334.37736 * 13 12 10 15 15 C 1.39885 * 119.99957 * 154.38293 * 13 12 10 16 16 N 1.30904 * 120.00355 * 341.08821 * 15 13 12 17 17 Si 1.86802 * 120.00247 * 161.08548 * 15 13 12 18 18 H 1.48500 * 109.46845 * 94.98790 * 17 15 13 19 19 H 1.48497 * 109.47673 * 214.98486 * 17 15 13 20 20 H 1.48504 * 109.46993 * 334.99098 * 17 15 13 21 21 C 1.38006 * 119.83718 * 172.05550 * 7 6 2 22 22 H 1.09003 * 109.46850 * 306.51742 * 1 2 3 23 23 H 1.08994 * 109.47015 * 66.51616 * 1 2 3 24 24 H 1.08999 * 109.47322 * 186.51933 * 1 2 3 25 25 H 1.08993 * 109.47634 * 191.71213 * 3 2 1 26 26 H 1.09006 * 109.47022 * 311.71884 * 3 2 1 27 27 H 1.09007 * 109.46979 * 71.71285 * 3 2 1 28 28 H 1.08997 * 109.47271 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.46803 * 300.00456 * 4 2 1 30 30 H 0.96698 * 113.99685 * 180.02562 * 5 4 2 31 31 H 0.96995 * 119.99927 * 125.49685 * 6 2 1 32 32 H 1.08000 * 119.72363 * 0.03856 * 8 7 6 33 33 H 1.08000 * 119.89455 * 179.71819 * 9 8 7 34 34 H 0.97000 * 119.99788 * 0.02562 * 11 10 9 35 35 H 0.96993 * 120.00196 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00795 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.11509 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5637 -0.0476 -2.4160 6 7 2.0184 -0.6907 1.1962 7 6 1.5884 -0.2836 2.4631 8 6 0.8243 0.8770 2.5978 9 6 0.3974 1.2957 3.8421 10 6 0.7149 0.5586 4.9737 11 7 0.2804 0.9780 6.2242 12 6 1.4843 -0.6229 4.8475 13 6 1.8137 -1.3820 5.9895 14 1 1.8630 -0.9068 6.9580 15 6 2.0766 -2.7505 5.8676 16 7 1.6709 -3.4033 4.8080 17 14 3.0069 -3.6467 7.2170 18 1 2.0393 -4.2765 8.1510 19 1 3.8664 -4.6962 6.6129 20 1 3.8545 -2.6798 7.9601 21 6 1.9171 -1.0340 3.5737 22 1 -0.3633 0.6116 0.8259 23 1 -0.3633 0.4095 -0.9425 24 1 -0.3634 -1.0210 0.1167 25 1 3.1099 1.4496 -0.2086 26 1 1.5165 2.0130 -0.7671 27 1 1.8572 1.8925 0.9758 28 1 3.1300 -0.7217 -1.2491 29 1 1.6766 -1.7489 -1.2493 30 1 1.8487 -0.4513 -3.2472 31 1 2.6399 -1.4303 1.1094 32 1 0.5686 1.4544 1.7216 33 1 -0.1894 2.1977 3.9344 34 1 -0.2467 1.7879 6.3080 35 1 0.5040 0.4610 7.0139 36 1 1.8535 -4.3521 4.7233 37 1 2.5052 -1.9334 3.4654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166378795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:45 Heat of formation + Delta-G solvation = -15.797740 kcal Electronic energy + Delta-G solvation = -18630.753132 eV Core-core repulsion = 15793.932171 eV Total energy + Delta-G solvation = -2836.820962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.84737 -37.27121 -35.53665 -33.43626 -32.59726 -30.26545 -29.30519 -26.74002 -26.65968 -25.71875 -24.40036 -21.13101 -20.09244 -19.03107 -17.51865 -16.78220 -16.34147 -15.43253 -15.01644 -14.86035 -14.80123 -14.12267 -13.69266 -12.83459 -12.82099 -12.42209 -12.27359 -12.08606 -11.96817 -11.56658 -11.46243 -11.15551 -11.01728 -10.91727 -10.79754 -10.38798 -10.02911 -10.01901 -9.81780 -9.62597 -9.09410 -8.99985 -7.72442 -7.20389 -6.61944 -5.51893 -4.02709 2.91641 3.13849 3.18369 3.32645 3.50007 3.97453 4.04517 4.79287 4.82432 5.16495 5.21539 5.44579 5.46540 5.70894 5.86034 5.96563 6.21937 6.26744 6.33249 6.40117 6.44610 6.59248 6.82573 6.91243 7.15227 7.20365 7.33320 7.50610 7.61503 7.73981 7.90981 8.02060 8.14094 8.48270 8.77327 8.92193 8.95845 9.02301 9.28549 9.37181 10.37671 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.006423 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.687923 B = 4358.136687 C = 5187.706292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.192 3.808 3 C -0.167 4.167 4 C 0.078 3.922 5 O -0.565 6.565 6 N -0.755 5.755 7 C 0.184 3.816 8 C -0.265 4.265 9 C -0.154 4.154 10 C 0.084 3.916 11 N -0.889 5.889 12 C 0.096 3.904 13 C -0.466 4.466 14 H 0.071 0.929 15 C 0.079 3.921 16 N -0.797 5.797 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.202 4.202 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.375 0.625 31 H 0.384 0.616 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.374 0.626 35 H 0.388 0.612 36 H 0.274 0.726 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 2.938 -7.931 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.104 3.896 3 C -0.226 4.226 4 C 0.000 4.000 5 O -0.369 6.369 6 N -0.391 5.391 7 C 0.086 3.914 8 C -0.288 4.288 9 C -0.179 4.179 10 C -0.017 4.017 11 N -0.432 5.432 12 C 0.091 3.909 13 C -0.497 4.497 14 H 0.089 0.911 15 C -0.138 4.138 16 N -0.424 5.424 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.226 4.226 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.217 0.783 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.199 0.801 35 H 0.216 0.784 36 H 0.085 0.915 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.618 3.170 -7.758 8.404 hybrid contribution 0.788 -1.218 0.440 1.516 sum 1.406 1.952 -7.318 7.703 Atomic orbital electron populations 1.22412 0.95090 1.02605 1.02330 1.19705 0.94071 0.91976 0.83894 1.22442 1.00191 0.96656 1.03265 1.22281 0.97068 0.94955 0.85715 1.86457 1.77481 1.57221 1.15718 1.44313 1.53637 1.39057 1.02071 1.17373 0.96631 0.93763 0.83613 1.20136 1.12278 1.00284 0.96090 1.19767 1.06177 0.99892 0.92047 1.17869 1.00981 0.97836 0.85016 1.41810 1.64516 1.30443 1.06414 1.16948 0.90731 0.90113 0.93109 1.19108 1.43128 0.92752 0.94710 0.91125 1.25734 0.93890 0.97907 0.96226 1.69900 1.35183 1.09447 1.27846 0.86481 0.80282 0.79353 0.81570 1.19970 1.20356 1.18730 1.20426 1.09225 1.02340 0.90648 0.90101 0.92496 0.93016 0.93611 0.92557 0.89950 0.93667 0.93464 0.77850 0.78278 0.87480 0.89834 0.80142 0.78398 0.91501 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.19 3.17 0.89 -131.81 -0.12 3.05 16 3 C -0.17 -2.72 8.01 37.16 0.30 -2.42 16 4 C 0.08 1.05 6.00 37.16 0.22 1.27 16 5 O -0.56 -6.87 12.43 -35.23 -0.44 -7.31 16 6 N -0.75 -14.52 5.25 -45.99 -0.24 -14.77 16 7 C 0.18 4.25 6.21 -83.77 -0.52 3.73 16 8 C -0.26 -5.92 6.78 -39.14 -0.27 -6.18 16 9 C -0.15 -3.54 9.86 -39.47 -0.39 -3.93 16 10 C 0.08 2.04 6.79 -83.23 -0.56 1.47 16 11 N -0.89 -18.35 8.98 32.75 0.29 -18.06 16 12 C 0.10 2.56 5.57 -106.66 -0.59 1.96 16 13 C -0.47 -12.28 8.48 -37.91 -0.32 -12.60 16 14 H 0.07 1.78 6.70 -52.49 -0.35 1.42 16 15 C 0.08 1.99 5.10 -17.33 -0.09 1.91 16 16 N -0.80 -20.91 11.10 55.55 0.62 -20.29 16 17 Si 0.90 18.96 29.60 -169.99 -5.03 13.93 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.20 -5.23 8.51 -38.75 -0.33 -5.56 16 22 H 0.08 1.50 4.74 -51.93 -0.25 1.25 16 23 H 0.06 0.89 7.49 -51.93 -0.39 0.50 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.06 0.85 7.99 -51.93 -0.41 0.44 16 27 H 0.08 1.48 4.86 -51.93 -0.25 1.23 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.38 2.69 9.12 45.56 0.42 3.10 16 31 H 0.38 7.01 8.49 -40.82 -0.35 6.66 16 32 H 0.11 2.18 3.42 -52.49 -0.18 2.00 16 33 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.37 6.54 8.83 -40.82 -0.36 6.18 16 35 H 0.39 7.87 7.04 -40.82 -0.29 7.58 16 36 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 37 H 0.11 3.05 6.28 -52.49 -0.33 2.72 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -29.27 292.80 -6.75 -36.01 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -3.99 Total: 25.92 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.37 Total: -19.85 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.67 Total: -53.11 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.44 Total: -7.31 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.27 -6.75 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166378795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.217 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds