Wall clock time and date at job start Mon Mar 30 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47288 * 2 1 4 4 C 1.47438 * 110.99924 * 174.91551 * 3 2 1 5 5 C 1.54315 * 107.23269 * 236.73969 * 4 3 2 6 6 C 1.55137 * 103.02247 * 337.71918 * 5 4 3 7 7 H 1.09001 * 110.98789 * 277.56398 * 6 5 4 8 8 C 1.52994 * 111.02777 * 153.75722 * 6 5 4 9 9 C 1.50703 * 109.47273 * 72.71483 * 8 6 5 10 10 N 1.30802 * 125.15408 * 89.69192 * 9 8 6 11 11 C 1.33322 * 109.25158 * 179.89243 * 10 9 8 12 12 C 1.39420 * 107.08489 * 0.36935 * 11 10 9 13 13 C 1.39849 * 126.87415 * 179.81602 * 12 11 10 14 14 H 1.07997 * 119.99748 * 179.97438 * 13 12 11 15 15 C 1.40171 * 120.00001 * 359.95349 * 13 12 11 16 16 N 1.30797 * 119.99839 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00065 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47251 * 59.99981 * 17 15 13 19 19 H 1.48496 * 109.47230 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47069 * 300.00265 * 17 15 13 21 21 O 1.34012 * 125.15302 * 270.00404 * 9 8 6 22 22 C 1.47837 * 111.00081 * 54.07041 * 3 2 1 23 23 H 1.09000 * 109.46911 * 53.90560 * 1 2 3 24 24 H 1.09000 * 109.47331 * 173.90684 * 1 2 3 25 25 H 1.08998 * 109.47385 * 293.90848 * 1 2 3 26 26 H 1.09004 * 109.46779 * 240.00075 * 2 1 3 27 27 H 1.08992 * 109.47078 * 120.00231 * 2 1 3 28 28 H 1.08999 * 109.88763 * 356.14739 * 4 3 2 29 29 H 1.09008 * 109.89103 * 117.33824 * 4 3 2 30 30 H 1.09002 * 110.70411 * 96.09777 * 5 4 3 31 31 H 1.09004 * 110.71149 * 219.33307 * 5 4 3 32 32 H 1.09005 * 109.47037 * 192.71381 * 8 6 5 33 33 H 1.08998 * 109.47348 * 312.71388 * 8 6 5 34 34 H 1.08006 * 126.45993 * 180.10832 * 11 10 9 35 35 H 0.97000 * 119.99900 * 179.97438 * 16 15 13 36 36 H 1.09008 * 110.37599 * 265.19323 * 22 3 2 37 37 H 1.09006 * 110.37694 * 27.53271 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4885 1.4260 0.1220 5 6 3.8204 2.2829 1.3617 6 6 2.5444 3.1465 1.5417 7 1 2.5646 4.0149 0.8831 8 6 2.3712 3.5727 3.0008 9 6 3.3927 4.6272 3.3408 10 7 3.2196 5.9162 3.2013 11 6 4.3214 6.5532 3.5985 12 6 5.2345 5.5798 4.0017 13 6 6.5274 5.7930 4.4903 14 1 7.1435 4.9521 4.7723 15 6 7.0237 7.0981 4.6135 16 7 6.2774 8.1166 4.2719 17 14 8.7509 7.3829 5.2653 18 1 9.7322 6.7081 4.3784 19 1 9.0334 8.8403 5.2986 20 1 8.8599 6.8265 6.6379 21 8 4.6183 4.3861 3.8263 22 6 1.4328 2.1545 1.1176 23 1 -0.3633 0.6054 -0.8304 24 1 -0.3634 -1.0218 -0.1091 25 1 -0.3634 0.4165 0.9395 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8780 0.4166 0.2537 29 1 3.9221 1.8798 -0.7693 30 1 3.9841 1.6507 2.2345 31 1 4.6892 2.9136 1.1730 32 1 1.3694 3.9776 3.1446 33 1 2.5106 2.7089 3.6507 34 1 4.4788 7.6218 3.6027 35 1 6.6207 9.0197 4.3575 36 1 0.5484 2.6962 0.7821 37 1 1.1811 1.4905 1.9446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260798360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:44 Heat of formation + Delta-G solvation = -3.206424 kcal Electronic energy + Delta-G solvation = -18148.618661 eV Core-core repulsion = 15312.343700 eV Total energy + Delta-G solvation = -2836.274961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96285 -39.06091 -34.37330 -33.89182 -32.67801 -31.08873 -28.88212 -28.29218 -26.78662 -23.95130 -22.48138 -20.83920 -20.57163 -20.17785 -19.18845 -17.56424 -16.12958 -15.65390 -15.40692 -14.98485 -14.50443 -14.24623 -13.61691 -13.50495 -13.14962 -12.99402 -12.53048 -12.34562 -12.04433 -11.82377 -11.59772 -11.39027 -11.29168 -11.11515 -10.90825 -10.78017 -10.60160 -10.45445 -10.29366 -10.23204 -9.61433 -9.41928 -8.66903 -8.26169 -7.27218 -6.90026 -4.52551 2.82056 2.97229 3.00871 3.36298 3.74973 4.01808 4.40988 4.58724 4.81649 4.93654 5.03365 5.09331 5.14255 5.31336 5.38880 5.45955 5.62146 5.69011 5.74471 5.80345 5.89181 5.95955 6.04865 6.05139 6.11688 6.30653 6.36892 6.49020 6.70466 6.89549 7.02092 7.14215 7.23973 7.49937 7.61828 8.20397 8.37519 8.59614 8.73107 9.78794 10.05216 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048736 B = 0.004319 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.385929 B = 6481.387838 C = 6809.179235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.042 3.958 5 C -0.133 4.133 6 C -0.090 4.090 7 H 0.087 0.913 8 C 0.019 3.981 9 C 0.020 3.980 10 N -0.458 5.458 11 C -0.172 4.172 12 C 0.141 3.859 13 C -0.424 4.424 14 H 0.083 0.917 15 C 0.068 3.932 16 N -0.787 5.787 17 Si 0.940 3.060 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.263 1.263 21 O -0.242 6.242 22 C 0.048 3.952 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.192 0.808 35 H 0.286 0.714 36 H 0.079 0.921 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -10.717 -4.817 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.085 4.085 5 C -0.171 4.171 6 C -0.110 4.110 7 H 0.106 0.894 8 C -0.020 4.020 9 C -0.179 4.179 10 N -0.187 5.187 11 C -0.318 4.318 12 C 0.088 3.912 13 C -0.454 4.454 14 H 0.101 0.899 15 C -0.150 4.150 16 N -0.414 5.414 17 Si 0.763 3.237 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.188 1.188 21 O -0.134 6.134 22 C -0.080 4.080 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.482 -10.094 -5.552 12.758 hybrid contribution 1.712 -0.437 1.307 2.198 sum -3.770 -10.531 -4.245 11.964 Atomic orbital electron populations 1.21842 0.95034 1.01558 1.02534 1.22251 0.95919 0.89655 1.00386 1.63664 1.06122 1.11884 1.43982 1.22823 0.87824 0.99150 0.98727 1.22784 0.98984 0.98090 0.97227 1.22375 0.93787 0.97852 0.97000 0.89420 1.19333 0.94654 0.93815 0.94183 1.24494 0.86798 0.92564 1.14059 1.69569 1.28598 1.04009 1.16513 1.24135 0.89690 1.01106 1.16896 1.20705 0.93975 0.80627 0.95923 1.18324 0.95494 0.93627 1.37975 0.89918 1.25833 1.00584 0.94728 0.93808 1.69581 1.36837 1.00331 1.34663 0.85842 0.79753 0.78071 0.79998 1.18746 1.19911 1.18761 1.84301 1.26653 1.34441 1.67970 1.23095 0.97953 0.95274 0.91668 0.91765 0.92488 0.92572 0.91065 0.95041 0.93087 0.90635 0.91560 0.90528 0.89860 0.91527 0.79177 0.90292 0.90232 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.55 37.16 0.35 -1.06 16 2 C 0.05 0.50 5.35 -3.82 -0.02 0.48 16 3 N -0.53 -7.00 5.28 -231.26 -1.22 -8.22 16 4 C 0.04 0.57 6.89 -2.84 -0.02 0.55 16 5 C -0.13 -2.10 6.16 -24.91 -0.15 -2.26 16 6 C -0.09 -1.48 2.99 -88.49 -0.26 -1.74 16 7 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 8 C 0.02 0.35 5.35 -27.88 -0.15 0.20 16 9 C 0.02 0.49 7.30 -12.72 -0.09 0.40 16 10 N -0.46 -12.50 11.23 -10.02 -0.11 -12.62 16 11 C -0.17 -4.99 10.89 -16.46 -0.18 -5.17 16 12 C 0.14 4.04 7.08 -38.54 -0.27 3.77 16 13 C -0.42 -11.52 9.45 -38.25 -0.36 -11.88 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.07 1.71 5.50 -17.27 -0.09 1.61 16 16 N -0.79 -20.22 10.32 55.56 0.57 -19.64 16 17 Si 0.94 18.38 29.56 -169.99 -5.03 13.35 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 O -0.24 -6.56 10.81 3.12 0.03 -6.52 16 22 C 0.05 0.64 4.90 -2.30 -0.01 0.63 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.53 6.97 -51.93 -0.36 0.16 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.05 0.61 7.56 -51.93 -0.39 0.22 16 29 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.12 7.97 -51.93 -0.41 0.70 16 34 H 0.19 5.60 5.76 -52.48 -0.30 5.30 16 35 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.05 0.58 7.20 -51.93 -0.37 0.21 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -29.66 302.69 -8.06 -37.72 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.60 Total: 5.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.26 Total: -14.48 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.76 Total: -40.48 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.03 Total: -6.52 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.66 -8.06 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260798360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds