Wall clock time and date at job start Mon Mar 30 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47124 * 2 1 4 4 C 1.46847 * 111.00045 * 293.95536 * 3 2 1 5 5 C 1.53039 * 109.52409 * 185.83890 * 4 3 2 6 6 C 1.53121 * 109.27635 * 300.82179 * 5 4 3 7 7 C 1.53122 * 109.16218 * 57.65069 * 6 5 4 8 8 H 1.09006 * 109.50142 * 62.32528 * 7 6 5 9 9 C 1.50699 * 109.50312 * 182.40250 * 7 6 5 10 10 N 1.29916 * 125.08237 * 239.64036 * 9 7 6 11 11 C 1.36277 * 108.61772 * 180.26785 * 10 9 7 12 12 C 1.41257 * 126.67679 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99941 * 359.97438 * 12 11 10 14 14 C 1.39729 * 120.00444 * 180.02562 * 12 11 10 15 15 N 1.31000 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00266 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47209 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47229 * 119.99918 * 16 14 12 19 19 H 1.48495 * 109.47064 * 239.99467 * 16 14 12 20 20 C 1.38798 * 106.64703 * 0.02562 * 11 10 9 21 21 O 1.34064 * 125.07856 * 59.95122 * 9 7 6 22 22 C 1.46853 * 110.99414 * 58.20496 * 3 2 1 23 23 H 1.09008 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47021 * 299.99415 * 1 2 3 25 25 H 1.09003 * 109.47049 * 59.99869 * 1 2 3 26 26 H 1.09004 * 109.47113 * 239.99973 * 2 1 3 27 27 H 1.08997 * 109.47024 * 120.00595 * 2 1 3 28 28 H 1.09005 * 109.46186 * 65.82103 * 4 3 2 29 29 H 1.09003 * 109.45193 * 305.84907 * 4 3 2 30 30 H 1.08998 * 109.50603 * 180.88130 * 5 4 3 31 31 H 1.09004 * 109.50271 * 60.75729 * 5 4 3 32 32 H 1.09002 * 109.52050 * 297.75093 * 6 5 4 33 33 H 1.08998 * 109.52281 * 177.55687 * 6 5 4 34 34 H 0.96999 * 119.99757 * 180.02562 * 15 14 12 35 35 H 1.08004 * 126.74128 * 179.97438 * 20 11 10 36 36 H 1.08997 * 109.49173 * 54.16381 * 22 3 2 37 37 H 1.08996 * 109.42986 * 294.19418 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 -1.2528 5 6 2.3185 3.4528 -1.2788 6 6 1.8234 4.2649 -0.0788 7 6 2.1567 3.5099 1.2110 8 1 3.2380 3.4074 1.3036 9 6 1.6206 4.2739 2.3941 10 7 2.3391 4.7328 3.3744 11 6 1.5158 5.3611 4.2602 12 6 1.8978 5.9959 5.4629 13 1 2.9366 6.0138 5.7578 14 6 0.9315 6.6000 6.2716 15 7 -0.3285 6.5779 5.9141 16 14 1.4366 7.4389 7.8623 17 1 2.9069 7.3249 8.0370 18 1 1.0537 8.8728 7.8090 19 1 0.7505 6.7857 9.0058 20 6 0.2289 5.2547 3.7514 21 8 0.3301 4.5765 2.5953 22 6 1.5140 2.1218 1.1653 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5873 2.1708 -1.3199 29 1 2.0319 1.4808 -2.0979 30 1 2.0462 3.9646 -2.2018 31 1 3.4022 3.3488 -1.2257 32 1 0.7446 4.4022 -0.1520 33 1 2.3156 5.2374 -0.0691 34 1 -0.9993 6.9976 6.4752 35 1 -0.6760 5.6411 4.1968 36 1 1.7620 1.5766 2.0760 37 1 0.4318 2.2251 1.0873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260835445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:23 Heat of formation + Delta-G solvation = -22.690377 kcal Electronic energy + Delta-G solvation = -18505.498975 eV Core-core repulsion = 15668.379127 eV Total energy + Delta-G solvation = -2837.119849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.22933 -40.21052 -36.14360 -35.67599 -34.51797 -32.63139 -30.48263 -29.83041 -27.34870 -25.78144 -24.62337 -22.97236 -22.57936 -21.47569 -20.40127 -19.09403 -17.54636 -16.90744 -16.88915 -16.38673 -16.01841 -15.70116 -15.29605 -15.18401 -15.03613 -14.33942 -14.11746 -13.83239 -13.43527 -13.26203 -13.05443 -12.98960 -12.68193 -12.53585 -12.33847 -11.96158 -11.89634 -11.76868 -11.64033 -11.52949 -11.41483 -10.99033 -10.96897 -9.28557 -9.21521 -8.66717 -6.52617 1.11155 1.38358 1.38493 1.56009 2.15305 2.20954 2.44847 2.94456 3.31684 3.56181 3.78692 3.82602 4.07742 4.14639 4.26507 4.31094 4.35366 4.52598 4.57169 4.66274 4.76238 4.82372 4.91829 4.94643 5.00355 5.08076 5.09926 5.20548 5.29097 5.33479 5.38229 5.42448 5.61448 5.83807 6.03841 6.18729 6.31278 6.69742 6.84369 7.54380 8.39393 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042276 B = 0.004800 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.153498 B = 5831.418169 C = 6036.912619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.050 3.950 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.026 3.974 8 H 0.105 0.895 9 C 0.161 3.839 10 N -0.546 5.546 11 C 0.106 3.894 12 C -0.459 4.459 13 H 0.070 0.930 14 C 0.020 3.980 15 N -0.853 5.853 16 Si 1.010 2.990 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.262 1.262 20 C -0.228 4.228 21 O -0.233 6.233 22 C 0.075 3.925 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.290 0.710 35 H 0.223 0.777 36 H 0.063 0.937 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -8.855 -12.410 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.078 4.078 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.006 3.994 8 H 0.123 0.877 9 C -0.047 4.047 10 N -0.282 5.282 11 C -0.009 4.009 12 C -0.492 4.492 13 H 0.089 0.911 14 C -0.190 4.190 15 N -0.485 5.485 16 Si 0.830 3.170 17 H -0.187 1.187 18 H -0.186 1.186 19 H -0.186 1.186 20 C -0.297 4.297 21 O -0.121 6.121 22 C -0.054 4.054 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.608 -8.889 -12.306 15.266 hybrid contribution -1.701 0.719 1.076 2.137 sum -0.094 -8.171 -11.230 13.888 Atomic orbital electron populations 1.22415 0.98128 1.02999 1.01422 1.22245 0.93024 0.88583 1.03824 1.62115 1.59502 1.02818 1.01896 1.22260 0.98306 0.95324 0.91889 1.21576 1.01545 0.94308 0.96886 1.21629 1.01192 0.98895 0.93285 1.19638 1.00437 0.92336 0.86974 0.87674 1.26420 0.78899 1.00833 0.98528 1.70736 1.35419 1.17240 1.04777 1.19845 0.88765 0.97080 0.95188 1.18848 0.95592 1.32064 1.02705 0.91122 1.26730 0.93853 0.95240 1.03167 1.69344 1.02520 1.37889 1.38731 0.84738 0.79236 0.77938 0.75137 1.18665 1.18566 1.18603 1.26415 1.02341 1.12567 0.88404 1.84055 1.30070 1.59169 1.38807 1.21837 0.96716 0.92415 0.94460 0.90545 0.94407 0.92152 0.88236 0.90885 0.94661 0.88022 0.88738 0.90381 0.92531 0.92030 0.89860 0.76105 0.91880 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 9.21 71.98 0.66 -3.01 16 2 C 0.05 0.98 6.08 86.30 0.52 1.50 16 3 N -0.54 -12.98 4.86 -896.35 -4.35 -17.34 16 4 C 0.05 0.98 5.05 86.33 0.44 1.42 16 5 C -0.11 -2.20 6.09 30.65 0.19 -2.01 16 6 C -0.11 -3.33 5.27 30.68 0.16 -3.17 16 7 C 0.03 0.94 2.82 -11.49 -0.03 0.91 16 8 H 0.11 3.80 8.14 -2.38 -0.02 3.79 16 9 C 0.16 7.93 6.78 88.39 0.60 8.53 16 10 N -0.55 -31.24 11.36 -296.17 -3.36 -34.60 16 11 C 0.11 6.50 6.89 39.33 0.27 6.77 16 12 C -0.46 -27.51 9.49 23.37 0.22 -27.28 16 13 H 0.07 4.18 7.84 -2.91 -0.02 4.16 16 14 C 0.02 1.05 5.49 85.18 0.47 1.52 16 15 N -0.85 -46.29 10.34 21.79 0.23 -46.07 16 16 Si 1.01 40.70 29.56 68.60 2.03 42.73 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 20 C -0.23 -13.42 11.18 67.95 0.76 -12.66 16 21 O -0.23 -12.40 10.72 -1.29 -0.01 -12.41 16 22 C 0.07 2.36 4.10 86.32 0.35 2.72 16 23 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.04 0.90 6.50 -2.39 -0.02 0.89 16 25 H 0.06 1.10 6.68 -2.39 -0.02 1.09 16 26 H 0.10 1.45 8.06 -2.38 -0.02 1.43 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 0.72 6.75 -2.38 -0.02 0.71 16 29 H 0.10 1.50 8.06 -2.39 -0.02 1.48 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 35 H 0.22 13.07 5.78 -2.91 -0.02 13.06 16 36 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 37 H 0.03 1.14 6.60 -2.39 -0.02 1.13 16 Total: -1.00 -68.40 296.32 0.19 -68.21 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.05 Total: 24.25 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.61 Total: -24.78 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -7.49 Total: -98.00 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.01 Total: -12.41 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -68.40 0.19 -68.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260835445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.521 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds