Wall clock time and date at job start Mon Mar 30 2020 04:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 N 1.46505 * 109.46984 * 119.99734 * 2 1 3 5 5 N 1.40206 * 126.17193 * 300.90057 * 4 2 1 6 6 C 1.30729 * 109.10931 * 180.02562 * 5 4 2 7 7 C 1.39309 * 108.90684 * 359.79722 * 6 5 4 8 8 C 1.37683 * 126.17107 * 120.92600 * 4 2 1 9 9 C 1.40239 * 126.73338 * 359.92485 * 8 4 2 10 10 H 1.07994 * 119.99973 * 37.25254 * 9 8 4 11 11 C 1.40170 * 120.00004 * 217.24477 * 9 8 4 12 12 N 1.30769 * 119.99659 * 20.08668 * 11 9 8 13 13 Si 1.86798 * 120.00271 * 200.35611 * 11 9 8 14 14 H 1.48496 * 109.46928 * 90.00331 * 13 11 9 15 15 H 1.48498 * 109.47165 * 210.00236 * 13 11 9 16 16 H 1.48496 * 109.47101 * 330.00672 * 13 11 9 17 17 C 1.50797 * 123.99161 * 179.40055 * 7 6 5 18 18 H 1.08998 * 109.51896 * 103.76308 * 17 7 6 19 19 O 1.42901 * 109.86958 * 224.32733 * 17 7 6 20 20 C 1.53399 * 108.30331 * 344.14464 * 17 7 6 21 21 C 1.53043 * 109.60372 * 49.99096 * 20 17 7 22 22 C 1.51092 * 127.72596 * 180.16295 * 6 5 4 23 23 H 1.09004 * 109.46894 * 300.00428 * 1 2 3 24 24 H 1.09000 * 109.46923 * 59.99979 * 1 2 3 25 25 H 1.08997 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46850 * 239.99830 * 2 1 3 27 27 H 1.08997 * 109.46962 * 59.99844 * 3 2 1 28 28 H 1.09000 * 109.46563 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46902 * 299.99403 * 3 2 1 30 30 H 0.96998 * 119.99394 * 181.82555 * 12 11 9 31 31 H 0.96699 * 114.00702 * 178.95867 * 19 17 7 32 32 H 1.09000 * 109.44987 * 289.95135 * 20 17 7 33 33 H 1.08992 * 109.42577 * 170.01846 * 20 17 7 34 34 H 1.09007 * 109.43025 * 168.52644 * 21 20 17 35 35 H 1.08997 * 109.43049 * 48.68130 * 21 20 17 36 36 H 1.08997 * 109.70213 * 282.86098 * 22 6 5 37 37 H 1.09001 * 109.69912 * 43.46473 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7461 -0.3364 2.5253 6 6 2.3489 -1.1774 3.3243 7 6 3.0345 -2.1166 2.5571 8 6 2.8277 -1.8042 1.2182 9 6 3.3386 -2.4917 0.1078 10 1 3.6495 -1.9447 -0.7699 11 6 3.4458 -3.8890 0.1372 12 7 2.7363 -4.5814 0.9900 13 14 4.6078 -4.7616 -1.0366 14 1 5.9442 -4.8940 -0.4028 15 1 4.0731 -6.1108 -1.3507 16 1 4.7300 -3.9735 -2.2892 17 6 3.8586 -3.2388 3.1365 18 1 3.3077 -4.1756 3.0534 19 8 5.0979 -3.3445 2.4331 20 6 4.1274 -2.9259 4.6140 21 6 2.8128 -2.5660 5.3101 22 6 2.3359 -1.1883 4.8351 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 2.8301 -5.5460 1.0285 31 1 5.6822 -4.0386 2.7676 32 1 4.8186 -2.0862 4.6873 33 1 4.5657 -3.7999 5.0957 34 1 2.9679 -2.5439 6.3889 35 1 2.0579 -3.3142 5.0684 36 1 3.0062 -0.4168 5.2139 37 1 1.3235 -1.0055 5.1952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:19 Heat of formation + Delta-G solvation = -0.634288 kcal Electronic energy + Delta-G solvation = -19505.622577 eV Core-core repulsion = 16669.459152 eV Total energy + Delta-G solvation = -2836.163425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48141 -36.56687 -34.70702 -33.80516 -33.01565 -29.74584 -27.92548 -27.71151 -26.64149 -24.95771 -22.83807 -20.87482 -20.25619 -19.24409 -17.19838 -16.66959 -15.93107 -15.35411 -14.51410 -14.01654 -13.76935 -13.64475 -13.33706 -13.13085 -12.66303 -12.24394 -12.21498 -11.82532 -11.71360 -11.50288 -11.30581 -11.07171 -10.88790 -10.72289 -10.55616 -10.43087 -10.40732 -10.15884 -9.88435 -9.51550 -9.03187 -8.66303 -8.62407 -7.51042 -6.70604 -6.42497 -4.35743 3.08466 3.19475 3.22808 3.66072 3.97929 4.16413 4.35305 5.19770 5.38856 5.50444 5.57016 5.60483 5.75237 5.84401 5.96398 6.05213 6.11616 6.24028 6.30543 6.33504 6.36789 6.39123 6.48699 6.56468 6.58730 6.73181 6.80704 6.84535 7.14434 7.24773 7.47806 7.60063 7.76088 8.01461 8.46666 8.54860 8.96183 8.96322 9.24099 9.62367 10.41176 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.013070 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.024424 B = 2141.791958 C = 3551.213241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.175 3.825 3 C -0.156 4.156 4 N -0.420 5.420 5 N -0.371 5.371 6 C 0.079 3.921 7 C -0.312 4.312 8 C 0.301 3.699 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.112 3.888 12 N -0.790 5.790 13 Si 0.909 3.091 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.269 1.269 17 C 0.210 3.790 18 H 0.064 0.936 19 O -0.549 6.549 20 C -0.149 4.149 21 C -0.104 4.104 22 C -0.029 4.029 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.275 0.725 31 H 0.343 0.657 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 1.324 2.186 2.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 C -0.214 4.214 4 N -0.208 5.208 5 N -0.193 5.193 6 C -0.084 4.084 7 C -0.325 4.325 8 C 0.182 3.818 9 C -0.503 4.503 10 H 0.090 0.910 11 C -0.108 4.108 12 N -0.417 5.417 13 Si 0.734 3.266 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.193 1.193 17 C 0.151 3.849 18 H 0.081 0.919 19 O -0.350 6.350 20 C -0.187 4.187 21 C -0.142 4.142 22 C -0.068 4.068 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.186 0.814 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.691 2.749 1.749 3.331 hybrid contribution 1.312 -1.618 -0.176 2.091 sum 0.621 1.131 1.572 2.034 Atomic orbital electron populations 1.22036 0.95442 1.02145 1.01308 1.20646 0.93798 0.92134 0.86255 1.22121 1.01277 0.96493 1.01502 1.49001 1.42015 1.27032 1.02784 1.76486 1.28588 1.26865 0.87345 1.21456 0.98073 0.94593 0.94327 1.19099 1.16191 1.05550 0.91653 1.18111 0.86394 0.83227 0.94024 1.18247 1.40348 0.91293 1.00451 0.90969 1.25371 0.93261 0.96916 0.95230 1.69810 1.32040 1.07799 1.32096 0.86341 0.81615 0.78027 0.80598 1.19106 1.21063 1.19314 1.19691 0.82876 0.96721 0.85600 0.91890 1.86789 1.30118 1.57564 1.60502 1.22374 0.97320 1.00237 0.98805 1.21378 0.97713 0.97095 0.98005 1.19898 1.00421 0.96840 0.89679 0.92146 0.92577 0.92472 0.89052 0.92077 0.92833 0.92495 0.91491 0.81412 0.92298 0.93520 0.92756 0.91855 0.91815 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.44 37.16 0.35 -2.41 16 2 C 0.18 3.63 3.67 -67.93 -0.25 3.38 16 3 C -0.16 -2.78 9.47 37.16 0.35 -2.43 16 4 N -0.42 -10.59 3.36 -52.30 -0.18 -10.77 16 5 N -0.37 -9.44 12.38 33.64 0.42 -9.02 16 6 C 0.08 1.96 7.06 -82.47 -0.58 1.37 16 7 C -0.31 -8.17 5.27 -103.88 -0.55 -8.72 16 8 C 0.30 8.23 6.29 -84.19 -0.53 7.70 16 9 C -0.47 -12.58 8.16 -38.11 -0.31 -12.89 16 10 H 0.07 1.90 7.65 -52.49 -0.40 1.50 16 11 C 0.11 2.83 3.78 -17.28 -0.07 2.76 16 12 N -0.79 -20.35 10.31 55.56 0.57 -19.77 16 13 Si 0.91 19.46 29.61 -169.99 -5.03 14.43 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 C 0.21 4.85 2.58 -27.63 -0.07 4.78 16 18 H 0.06 1.55 6.38 -51.93 -0.33 1.22 16 19 O -0.55 -12.63 11.60 -35.23 -0.41 -13.04 16 20 C -0.15 -2.82 5.52 -26.50 -0.15 -2.97 16 21 C -0.10 -1.83 5.86 -26.54 -0.16 -1.98 16 22 C -0.03 -0.57 6.31 -27.52 -0.17 -0.74 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.89 7.20 -51.93 -0.37 1.52 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 31 H 0.34 6.23 9.09 45.56 0.41 6.65 16 32 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -30.64 298.25 -7.16 -37.80 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.90 Total: 8.02 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.13 Total: -12.15 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.81 Total: -39.56 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.41 Total: -13.04 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.64 -7.16 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.169 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds