Wall clock time and date at job start Mon Mar 30 2020 04:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47051 * 127.10274 * 3 2 1 5 5 C 1.37098 * 119.99593 * 263.98724 * 4 3 2 6 6 H 1.08004 * 119.99560 * 199.69340 * 5 4 3 7 7 C 1.38949 * 120.00366 * 19.69613 * 5 4 3 8 8 N 1.31414 * 120.00083 * 21.77368 * 7 5 4 9 9 Si 1.86806 * 120.00028 * 201.77239 * 7 5 4 10 10 H 1.48500 * 109.46791 * 89.99915 * 9 7 5 11 11 H 1.48491 * 109.46826 * 209.99824 * 9 7 5 12 12 H 1.48501 * 109.46774 * 330.00059 * 9 7 5 13 13 C 1.34770 * 120.00179 * 83.98548 * 4 3 2 14 14 O 1.21291 * 120.00379 * 180.02562 * 13 4 3 15 15 C 1.50710 * 119.99960 * 359.97438 * 13 4 3 16 16 H 1.09005 * 109.46100 * 319.97997 * 15 13 4 17 17 C 1.53040 * 109.45991 * 79.94851 * 15 13 4 18 18 C 1.53113 * 109.27819 * 179.19646 * 17 15 13 19 19 H 1.09004 * 109.57678 * 62.27687 * 18 17 15 20 20 C 1.53000 * 109.52496 * 182.43595 * 18 17 15 21 21 C 1.53122 * 109.15868 * 302.34614 * 18 17 15 22 22 C 1.53033 * 109.28031 * 57.65292 * 21 18 17 23 23 N 1.46838 * 109.52328 * 300.82220 * 22 21 18 24 24 H 4.40643 * 5.51509 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47279 * 7.10107 * 3 2 1 26 26 H 1.09000 * 109.47058 * 247.10179 * 3 2 1 27 27 H 0.96998 * 120.00018 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.49969 * 299.13353 * 17 15 13 29 29 H 1.08997 * 109.50618 * 59.24956 * 17 15 13 30 30 H 1.08999 * 109.46983 * 179.67783 * 20 18 17 31 31 H 1.08997 * 109.47232 * 299.68275 * 20 18 17 32 32 H 1.09007 * 109.46734 * 59.68358 * 20 18 17 33 33 H 1.08998 * 109.50019 * 297.71069 * 21 18 17 34 34 H 1.09004 * 109.50094 * 177.59594 * 21 18 17 35 35 H 1.08998 * 109.45919 * 180.80435 * 22 21 18 36 36 H 1.09002 * 109.46053 * 60.84189 * 22 21 18 37 37 H 1.00910 * 111.00129 * 185.84042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8341 -1.1016 5 6 3.4799 0.2573 -2.2963 6 1 4.1221 0.7860 -2.9852 7 6 3.0043 -1.0073 -2.6208 8 7 1.9239 -1.4731 -2.0356 9 14 3.9008 -2.0452 -3.8892 10 1 4.9275 -2.8771 -3.2116 11 1 2.9286 -2.9270 -4.5836 12 1 4.5589 -1.1564 -4.8803 13 6 3.2426 2.1678 -0.9407 14 8 3.6462 2.8579 -1.8529 15 6 2.8617 2.8018 0.3724 16 1 1.9621 2.3231 0.7594 17 6 4.0047 2.6249 1.3746 18 6 3.6216 3.2879 2.7005 19 1 2.7408 2.7962 3.1136 20 6 4.7845 3.1673 3.6873 21 6 3.3125 4.7668 2.4520 22 6 2.1897 4.8817 1.4185 23 7 2.6052 4.2332 0.1684 24 1 -1.0502 -0.0003 0.0001 25 1 3.0098 -1.0189 -0.1270 26 1 3.0091 0.4007 0.9467 27 1 1.5921 -2.3561 -2.2618 28 1 4.1844 1.5622 1.5377 29 1 4.9083 3.0913 0.9822 30 1 4.5130 3.6445 4.6289 31 1 5.0038 2.1142 3.8636 32 1 5.6654 3.6573 3.2724 33 1 4.2052 5.2670 2.0765 34 1 2.9977 5.2346 3.3849 35 1 1.9770 5.9337 1.2288 36 1 1.2932 4.3933 1.8006 37 1 1.9207 4.3779 -0.5589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300798560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:10 Heat of formation + Delta-G solvation = 25.772515 kcal Electronic energy + Delta-G solvation = -19072.776095 eV Core-core repulsion = 16237.757755 eV Total energy + Delta-G solvation = -2835.018340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45539 -37.46221 -35.12167 -33.19233 -32.20939 -31.26471 -30.49346 -27.23820 -26.39411 -25.04128 -22.97582 -22.06753 -19.60083 -18.79975 -17.87317 -16.69491 -16.18207 -15.90751 -14.66029 -14.58492 -14.36097 -14.01544 -13.74468 -13.47591 -13.08279 -12.69404 -12.32240 -12.26001 -12.21052 -11.81012 -11.54970 -11.40045 -11.04393 -10.94300 -10.55877 -10.46122 -10.45000 -10.31149 -10.06221 -9.36746 -9.23182 -8.89369 -8.30088 -7.94772 -7.81641 -6.30551 -3.84378 3.16612 3.26892 3.31571 3.66507 3.91674 4.03324 4.17192 4.45782 4.87044 4.97525 4.98259 5.09556 5.17173 5.41227 5.49835 5.54806 5.66609 5.71913 5.78077 5.83841 5.88902 6.00308 6.02308 6.17363 6.24086 6.28282 6.33289 6.45506 6.66818 6.70985 7.00479 7.35617 7.58804 7.75314 8.11724 8.46631 8.79474 9.17424 9.38598 9.96279 10.70192 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027922 B = 0.006793 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.549039 B = 4121.058825 C = 4277.879729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.112 4.112 3 C 0.229 3.771 4 N -0.442 5.442 5 C -0.315 4.315 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.565 6.565 15 C 0.079 3.921 16 H 0.050 0.950 17 C -0.102 4.102 18 C -0.094 4.094 19 H 0.066 0.934 20 C -0.144 4.144 21 C -0.111 4.111 22 C 0.059 3.941 23 N -0.665 5.665 24 H 0.198 0.802 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.267 0.733 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 4.855 11.191 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.114 4.114 3 C 0.105 3.895 4 N -0.162 5.162 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.446 6.446 15 C -0.035 4.035 16 H 0.068 0.932 17 C -0.141 4.141 18 C -0.112 4.112 19 H 0.084 0.916 20 C -0.201 4.201 21 C -0.149 4.149 22 C -0.071 4.071 23 N -0.298 5.298 24 H 0.216 0.784 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.995 5.190 10.760 11.988 hybrid contribution -1.062 -1.159 -0.583 1.677 sum -0.068 4.031 10.177 10.947 Atomic orbital electron populations 1.24258 0.95363 1.04135 1.04365 1.23204 0.94397 0.97166 0.96619 1.18331 0.84271 0.98083 0.88770 1.43670 1.56515 1.03999 1.11971 1.19648 1.28319 0.99789 0.96501 0.87906 1.25286 0.95010 0.98469 0.98523 1.70091 1.17975 1.18545 1.43382 0.86029 0.79156 0.79662 0.80516 1.20364 1.21173 1.19398 1.19948 0.84393 0.82270 0.88947 1.90529 1.49724 1.61240 1.43151 1.21381 0.98039 0.88847 0.95201 0.93250 1.21656 0.98457 1.00597 0.93352 1.21196 0.98410 0.96161 0.95482 0.91578 1.21798 0.98242 1.01646 0.98448 1.21646 0.99334 0.96177 0.97702 1.21909 0.95772 0.98788 0.90590 1.59942 1.50886 1.11497 1.07498 0.78450 0.87661 0.91729 0.92230 0.91171 0.90689 0.92995 0.92657 0.92599 0.91107 0.92062 0.90977 0.95723 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.46 19.25 29.55 0.57 -4.90 16 2 C -0.11 -2.52 10.40 -37.12 -0.39 -2.91 16 3 C 0.23 5.06 4.80 -6.82 -0.03 5.03 16 4 N -0.44 -11.18 2.60 -117.92 -0.31 -11.48 16 5 C -0.32 -8.71 9.28 -14.93 -0.14 -8.85 16 6 H 0.10 3.01 7.42 -52.48 -0.39 2.62 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.74 9.59 55.50 0.53 -22.21 16 9 Si 0.92 20.57 29.61 -169.99 -5.03 15.54 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 13 C 0.46 11.22 6.73 -10.98 -0.07 11.15 16 14 O -0.56 -15.93 16.19 5.55 0.09 -15.84 16 15 C 0.08 1.51 2.01 -68.87 -0.14 1.38 16 16 H 0.05 0.96 6.46 -51.93 -0.34 0.62 16 17 C -0.10 -1.68 4.41 -26.65 -0.12 -1.80 16 18 C -0.09 -1.22 2.79 -90.50 -0.25 -1.48 16 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.14 -1.57 9.20 37.16 0.34 -1.23 16 21 C -0.11 -1.38 5.38 -26.65 -0.14 -1.53 16 22 C 0.06 0.82 6.55 -3.84 -0.03 0.79 16 23 N -0.67 -11.91 6.09 -107.99 -0.66 -12.57 16 24 H 0.20 3.36 7.80 -54.08 -0.42 2.94 16 25 H 0.11 2.45 6.60 -51.93 -0.34 2.10 16 26 H 0.06 1.21 4.97 -51.93 -0.26 0.95 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.35 6.40 8.74 -39.29 -0.34 6.05 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -30.95 300.78 -6.68 -37.62 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.35 Total: 8.01 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.48 Total: -3.61 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.43 Total: -46.26 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.95 -6.68 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300798560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.394 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds