Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47408 * 34.97794 * 3 2 1 5 5 C 1.37091 * 119.99889 * 95.52014 * 4 3 2 6 6 H 1.08006 * 119.99825 * 163.19568 * 5 4 3 7 7 C 1.38952 * 120.00323 * 342.92183 * 5 4 3 8 8 N 1.31413 * 119.99658 * 341.76780 * 7 5 4 9 9 Si 1.86802 * 120.00298 * 161.77333 * 7 5 4 10 10 H 1.48505 * 109.46877 * 59.99678 * 9 7 5 11 11 H 1.48495 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47097 * 299.99735 * 9 7 5 13 13 C 1.34774 * 119.99653 * 275.52033 * 4 3 2 14 14 O 1.21297 * 119.99625 * 185.35982 * 13 4 3 15 15 C 1.50701 * 120.00320 * 5.35363 * 13 4 3 16 16 H 1.09003 * 109.51991 * 26.80987 * 15 13 4 17 17 C 1.53121 * 109.51801 * 146.93052 * 15 13 4 18 18 C 1.53049 * 109.27452 * 177.56456 * 17 15 13 19 19 N 1.46843 * 109.52059 * 300.81894 * 18 17 15 20 20 C 1.46850 * 111.19998 * 61.74549 * 19 18 17 21 21 H 1.08997 * 109.46229 * 58.26772 * 20 19 18 22 22 C 1.52996 * 109.46492 * 178.25243 * 20 19 18 23 23 C 1.53046 * 109.57404 * 298.28850 * 20 19 18 24 24 H 4.40643 * 5.51474 * 180.02562 * 4 1 2 25 25 H 1.09008 * 109.46976 * 274.97448 * 3 2 1 26 26 H 1.09003 * 109.46781 * 154.97954 * 3 2 1 27 27 H 0.97006 * 119.99983 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.50983 * 297.50020 * 17 15 13 29 29 H 1.08994 * 109.50762 * 57.58770 * 17 15 13 30 30 H 1.08991 * 109.45903 * 60.83725 * 18 17 15 31 31 H 1.08999 * 109.46042 * 180.81946 * 18 17 15 32 32 H 1.00904 * 111.00114 * 185.84126 * 19 18 17 33 33 H 1.08992 * 109.47214 * 59.99807 * 22 20 19 34 34 H 1.09006 * 109.47311 * 180.02562 * 22 20 19 35 35 H 1.08998 * 109.46919 * 299.99954 * 22 20 19 36 36 H 1.09002 * 109.45050 * 299.17622 * 23 20 19 37 37 H 1.08996 * 109.55849 * 179.05701 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1308 -0.7918 5 6 3.4710 -0.9515 -2.1087 6 1 4.0754 -1.6883 -2.6169 7 6 3.0293 0.1753 -2.7913 8 7 2.0221 0.8759 -2.3205 9 14 3.8670 0.6941 -4.3783 10 1 3.7537 -0.3983 -5.3779 11 1 3.2122 1.9177 -4.9066 12 1 5.3007 0.9750 -4.1123 13 6 3.2542 -2.3480 -0.2255 14 8 3.7495 -3.2618 -0.8506 15 6 2.7723 -2.5736 1.1845 16 1 1.9744 -1.8674 1.4141 17 6 2.2446 -4.0044 1.3220 18 6 1.8132 -4.2468 2.7703 19 7 2.9594 -4.0407 3.6647 20 6 3.4538 -2.6602 3.5849 21 1 2.6501 -1.9711 3.8444 22 6 4.6170 -2.4780 4.5620 23 6 3.9337 -2.3689 2.1612 24 1 -1.0499 -0.0002 -0.0004 25 1 3.0093 -0.0883 1.0239 26 1 3.0088 0.9321 -0.4347 27 1 1.7135 1.6624 -2.7972 28 1 1.3897 -4.1422 0.6599 29 1 3.0307 -4.7097 1.0530 30 1 1.0173 -3.5503 3.0335 31 1 1.4504 -5.2693 2.8749 32 1 2.7255 -4.2866 4.6149 33 1 5.4205 -3.1672 4.3028 34 1 4.9837 -1.4531 4.5032 35 1 4.2750 -2.6835 5.5763 36 1 4.7474 -3.0478 1.9063 37 1 4.2850 -1.3390 2.0981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300803221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = 2.914184 kcal Electronic energy + Delta-G solvation = -19029.526173 eV Core-core repulsion = 16193.516622 eV Total energy + Delta-G solvation = -2836.009552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11557 -39.03452 -37.09886 -34.24567 -33.48057 -33.07812 -32.72876 -28.42508 -27.89687 -26.90473 -24.85424 -22.99776 -21.10503 -20.16218 -19.69572 -18.43842 -17.92172 -17.35448 -16.52676 -16.10729 -15.94520 -15.88881 -14.96786 -14.85534 -14.40037 -14.30099 -14.01919 -13.90773 -13.43412 -13.20305 -12.81100 -12.77394 -12.71945 -12.50186 -12.17581 -12.15146 -11.92024 -11.60197 -11.38897 -11.21812 -11.06752 -10.64520 -10.21350 -9.83380 -9.33575 -8.31721 -5.94370 1.36708 1.40780 1.50629 1.88699 2.11605 2.30850 2.36789 3.03267 3.14959 3.25579 3.75662 3.85348 3.90640 3.95466 4.16673 4.30761 4.42521 4.51304 4.56734 4.61136 4.66751 4.82065 4.89352 4.96420 4.99188 5.06240 5.12452 5.23765 5.35009 5.41286 5.44864 5.45563 6.05348 6.11353 6.44851 6.63500 7.11726 7.14084 7.41968 7.99100 8.65855 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.006665 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.902839 B = 4199.872932 C = 4414.255621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.152 4.152 3 C 0.236 3.764 4 N -0.454 5.454 5 C -0.355 4.355 6 H 0.073 0.927 7 C 0.002 3.998 8 N -0.875 5.875 9 Si 0.985 3.015 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.268 1.268 13 C 0.447 3.553 14 O -0.631 6.631 15 C -0.091 4.091 16 H 0.083 0.917 17 C -0.095 4.095 18 C 0.071 3.929 19 N -0.691 5.691 20 C 0.090 3.910 21 H 0.047 0.953 22 C -0.139 4.139 23 C -0.095 4.095 24 H 0.234 0.766 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.272 0.728 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.356 0.644 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -0.899 13.849 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.154 4.154 3 C 0.113 3.887 4 N -0.171 5.171 5 C -0.482 4.482 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.512 5.512 9 Si 0.809 3.191 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.193 1.193 13 C 0.237 3.763 14 O -0.518 6.518 15 C -0.113 4.113 16 H 0.102 0.898 17 C -0.133 4.133 18 C -0.058 4.058 19 N -0.325 5.325 20 C -0.020 4.020 21 H 0.065 0.935 22 C -0.197 4.197 23 C -0.133 4.133 24 H 0.251 0.749 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.879 -1.366 13.027 13.128 hybrid contribution -0.627 0.759 -1.041 1.433 sum -1.505 -0.607 11.987 12.096 Atomic orbital electron populations 1.25142 0.96328 1.01227 1.03811 1.23441 0.94962 0.99527 0.97421 1.18350 0.84711 0.91434 0.94157 1.43912 1.56096 1.07041 1.10048 1.19565 1.32384 1.08366 0.87884 0.90930 1.25960 0.95375 0.96572 1.02148 1.70143 1.21799 1.18127 1.41134 0.85129 0.78762 0.77604 0.77606 1.20620 1.19483 1.19274 1.21021 0.83194 0.81776 0.90270 1.90456 1.50624 1.43575 1.67138 1.21226 0.99402 0.99409 0.91258 0.89844 1.21350 1.00071 0.94533 0.97393 1.21816 0.91286 1.01907 0.90791 1.60220 1.35657 1.23886 1.12763 1.21440 0.97503 0.89146 0.93889 0.93521 1.21776 0.97175 1.02312 0.98428 1.21566 0.96343 1.01413 0.94013 0.74949 0.89258 0.88609 0.91753 0.93099 0.92656 0.94254 0.88815 0.82335 0.92569 0.91292 0.90695 0.92759 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.76 19.25 74.32 1.43 -8.33 16 2 C -0.15 -6.73 10.33 31.13 0.32 -6.41 16 3 C 0.24 10.64 4.78 84.57 0.40 11.04 16 4 N -0.45 -23.93 2.60 -645.39 -1.68 -25.61 16 5 C -0.35 -20.52 9.38 84.04 0.79 -19.73 16 6 H 0.07 4.54 7.33 -2.91 -0.02 4.52 16 7 C 0.00 0.13 4.96 84.93 0.42 0.55 16 8 N -0.87 -45.88 9.26 21.66 0.20 -45.68 16 9 Si 0.99 42.78 29.59 68.60 2.03 44.81 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 C 0.45 22.92 6.59 87.66 0.58 23.50 16 14 O -0.63 -37.55 15.83 -3.08 -0.05 -37.60 16 15 C -0.09 -3.53 1.75 -11.46 -0.02 -3.55 16 16 H 0.08 3.13 5.83 -2.39 -0.01 3.11 16 17 C -0.09 -3.39 5.06 30.65 0.16 -3.24 16 18 C 0.07 1.81 6.55 86.33 0.57 2.37 16 19 N -0.69 -16.12 6.50 -491.67 -3.20 -19.32 16 20 C 0.09 2.16 3.04 44.94 0.14 2.30 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 C -0.14 -2.63 9.43 71.98 0.68 -1.95 16 23 C -0.09 -3.09 4.53 30.65 0.14 -2.95 16 24 H 0.23 7.09 7.80 -4.42 -0.03 7.05 16 25 H 0.09 3.36 5.98 -2.38 -0.01 3.34 16 26 H 0.10 4.60 6.33 -2.39 -0.02 4.58 16 27 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.23 7.77 -2.39 -0.02 2.21 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.36 6.11 8.79 -89.69 -0.79 5.33 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.20 7.13 -2.39 -0.02 2.18 16 Total: -1.00 -69.38 301.15 3.18 -66.20 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.27 Total: 23.60 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.60 Total: -6.41 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.68 Total: -90.60 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.05 Total: -37.60 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -69.38 3.18 -66.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300803221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.117 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds