Wall clock time and date at job start Mon Mar 30 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46981 * 125.37015 * 3 2 1 5 5 C 1.37100 * 119.99917 * 95.86820 * 4 3 2 6 6 H 1.08003 * 120.00205 * 163.68147 * 5 4 3 7 7 C 1.38952 * 120.00246 * 343.68832 * 5 4 3 8 8 N 1.31412 * 119.99546 * 336.65027 * 7 5 4 9 9 Si 1.86795 * 120.00112 * 156.64942 * 7 5 4 10 10 H 1.48496 * 109.47175 * 85.52377 * 9 7 5 11 11 H 1.48506 * 109.47506 * 325.52468 * 9 7 5 12 12 H 1.48499 * 109.47431 * 205.52241 * 9 7 5 13 13 C 1.34778 * 120.00254 * 275.87098 * 4 3 2 14 14 O 1.21284 * 120.00199 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99501 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.46651 * 179.97438 * 15 13 4 17 17 H 1.08996 * 109.50198 * 304.99738 * 16 15 13 18 18 C 1.53121 * 109.49995 * 184.92041 * 16 15 13 19 19 C 1.53119 * 109.16002 * 182.40519 * 18 16 15 20 20 C 1.53046 * 109.27776 * 57.65394 * 19 18 16 21 21 N 1.46847 * 109.52143 * 300.82107 * 20 19 18 22 22 C 1.46845 * 111.23352 * 61.72465 * 21 20 19 23 23 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47517 * 5.37147 * 3 2 1 25 25 H 1.09003 * 109.47166 * 245.36828 * 3 2 1 26 26 H 0.96999 * 119.99346 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46832 * 299.99556 * 15 13 4 28 28 H 1.08999 * 109.47413 * 60.00087 * 15 13 4 29 29 H 1.09005 * 109.52257 * 302.30528 * 18 16 15 30 30 H 1.08992 * 109.52664 * 62.43404 * 18 16 15 31 31 H 1.09002 * 109.50523 * 177.59000 * 19 18 16 32 32 H 1.08994 * 109.50547 * 297.67722 * 19 18 16 33 33 H 1.08996 * 109.46265 * 60.83658 * 20 19 18 34 34 H 1.08996 * 109.45867 * 180.81757 * 20 19 18 35 35 H 1.00897 * 110.99969 * 297.64570 * 21 20 19 36 36 H 1.09002 * 109.50080 * 178.27919 * 22 21 20 37 37 H 1.09003 * 109.43112 * 58.30764 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8004 -1.1263 5 6 3.4763 2.1144 -0.9366 6 1 4.0735 2.6289 -1.6750 7 6 3.0551 2.7842 0.2056 8 7 1.9962 2.3641 0.8607 9 14 3.9941 4.2816 0.8099 10 1 3.5021 5.4922 0.1046 11 1 5.4423 4.1024 0.5343 12 1 3.7844 4.4408 2.2714 13 6 3.2463 0.2446 -2.3490 14 8 3.6498 0.9068 -3.2815 15 6 2.8693 -1.1996 -2.5575 16 6 3.0883 -1.5770 -4.0240 17 1 2.5370 -0.8876 -4.6634 18 6 2.5911 -3.0052 -4.2639 19 6 2.8685 -3.3964 -5.7181 20 6 4.3672 -3.2659 -5.9993 21 7 4.7935 -1.8819 -5.7560 22 6 4.5805 -1.4984 -4.3546 23 1 -1.0501 -0.0003 0.0001 24 1 3.0098 -1.0222 -0.0962 25 1 3.0091 0.4291 0.9342 26 1 1.7019 2.8319 1.6578 27 1 3.4896 -1.8323 -1.9226 28 1 1.8202 -1.3423 -2.2987 29 1 3.1142 -3.6900 -3.5964 30 1 1.5196 -3.0553 -4.0704 31 1 2.5556 -4.4273 -5.8837 32 1 2.3139 -2.7361 -6.3847 33 1 4.9198 -3.9370 -5.3419 34 1 4.5661 -3.5297 -7.0380 35 1 4.3236 -1.2437 -6.3804 36 1 4.9338 -0.4791 -4.1985 37 1 5.1326 -2.1774 -3.7048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300834296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:43 Heat of formation + Delta-G solvation = 18.863365 kcal Electronic energy + Delta-G solvation = -18705.962135 eV Core-core repulsion = 15870.644192 eV Total energy + Delta-G solvation = -2835.317943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33072 -37.93462 -35.18492 -32.76241 -31.98537 -31.21405 -31.11902 -27.30236 -26.28822 -24.31839 -23.32046 -21.84572 -20.02769 -18.77003 -17.85812 -16.59163 -16.08543 -15.65797 -15.10565 -14.63220 -14.51066 -14.21846 -13.95191 -13.46744 -13.05875 -12.61865 -12.27955 -12.07547 -12.05709 -11.68330 -11.53334 -11.30934 -11.06430 -10.94811 -10.75907 -10.55357 -10.42349 -10.27402 -10.10507 -9.38353 -9.22821 -8.90548 -8.33018 -8.07847 -7.84857 -6.34053 -3.83268 3.15708 3.25663 3.31364 3.67354 3.92215 4.03239 4.18641 4.54283 4.78735 4.95627 5.04162 5.06489 5.22675 5.30714 5.46005 5.54342 5.63906 5.70614 5.80415 5.93919 5.96408 6.02755 6.07009 6.13634 6.21599 6.35487 6.42769 6.65154 6.73823 6.77033 7.00812 7.29339 7.57206 7.61914 8.06723 8.43770 8.78254 9.15342 9.38030 9.93762 10.67381 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030851 B = 0.006062 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.357335 B = 4617.518236 C = 5332.001714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.113 4.113 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.316 4.316 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.918 3.082 10 H -0.278 1.278 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.451 3.549 14 O -0.581 6.581 15 C -0.125 4.125 16 C -0.101 4.101 17 H 0.073 0.927 18 C -0.116 4.116 19 C -0.156 4.156 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.058 3.942 23 H 0.199 0.801 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.268 0.732 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.340 0.660 36 H 0.103 0.897 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -10.745 -4.587 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.240 3.760 14 O -0.466 6.466 15 C -0.166 4.166 16 C -0.122 4.122 17 H 0.092 0.908 18 C -0.154 4.154 19 C -0.195 4.195 20 C -0.075 4.075 21 N -0.314 5.314 22 C -0.071 4.071 23 H 0.216 0.784 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.121 0.879 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.142 -10.507 -4.766 11.594 hybrid contribution -1.252 0.884 0.688 1.679 sum -0.109 -9.624 -4.079 10.453 Atomic orbital electron populations 1.24282 0.95389 1.05453 1.02952 1.23226 0.94406 0.95893 0.97963 1.18260 0.84209 0.93410 0.93366 1.43736 1.55939 1.10586 1.05693 1.19629 1.31167 0.86935 1.06612 0.87808 1.25260 0.95219 0.99095 0.97721 1.70117 1.19550 1.41349 1.18952 0.86092 0.80408 0.81409 0.77686 1.20384 1.19441 1.20909 1.20067 0.84149 0.89034 0.82761 1.90471 1.51148 1.64475 1.40484 1.21566 1.02270 0.95875 0.96879 1.21537 0.98831 0.95462 0.96358 0.90817 1.21650 1.00853 0.96837 0.96042 1.22256 0.98632 1.01317 0.97342 1.22020 0.92972 0.91489 1.00992 1.60711 1.61571 1.03008 1.06132 1.22274 0.93502 1.03315 0.88023 0.78402 0.91983 0.87318 0.92195 0.90659 0.90385 0.92084 0.92206 0.91964 0.92167 0.91303 0.91375 0.84305 0.87922 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.11 -2.52 10.92 -37.12 -0.41 -2.92 16 3 C 0.23 5.05 4.91 -6.83 -0.03 5.02 16 4 N -0.44 -10.97 2.60 -117.93 -0.31 -11.28 16 5 C -0.32 -8.63 9.33 -14.93 -0.14 -8.77 16 6 H 0.10 2.99 7.38 -52.48 -0.39 2.60 16 7 C 0.03 0.81 4.83 -17.47 -0.08 0.73 16 8 N -0.86 -22.58 9.57 55.50 0.53 -22.05 16 9 Si 0.92 20.38 29.61 -169.99 -5.03 15.35 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.45 10.59 7.29 -10.99 -0.08 10.51 16 14 O -0.58 -15.28 13.61 5.55 0.08 -15.20 16 15 C -0.12 -2.25 3.78 -27.88 -0.11 -2.36 16 16 C -0.10 -1.64 1.98 -90.53 -0.18 -1.82 16 17 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 18 C -0.12 -1.51 5.29 -26.61 -0.14 -1.65 16 19 C -0.16 -1.77 6.08 -26.65 -0.16 -1.93 16 20 C 0.06 0.65 6.56 -3.83 -0.03 0.62 16 21 N -0.69 -9.85 6.87 -113.81 -0.78 -10.63 16 22 C 0.06 0.95 5.57 -3.83 -0.02 0.93 16 23 H 0.20 3.33 7.80 -54.09 -0.42 2.90 16 24 H 0.06 1.12 6.69 -51.93 -0.35 0.78 16 25 H 0.11 2.51 6.41 -51.93 -0.33 2.18 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.08 1.21 7.42 -51.93 -0.39 0.83 16 28 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.34 4.76 8.86 -39.29 -0.35 4.41 16 36 H 0.10 2.04 5.98 -51.93 -0.31 1.73 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -29.67 300.66 -7.22 -36.89 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.43 Total: 8.87 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.81 Total: -6.48 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.56 Total: -43.96 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.67 -7.22 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300834296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.756 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds