Wall clock time and date at job start Mon Mar 30 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46970 * 323.02106 * 3 2 1 5 5 C 1.37104 * 120.00026 * 275.96783 * 4 3 2 6 6 H 1.08002 * 119.99758 * 40.04222 * 5 4 3 7 7 C 1.38948 * 119.99994 * 220.04834 * 5 4 3 8 8 N 1.31414 * 120.00282 * 1.37327 * 7 5 4 9 9 Si 1.86806 * 119.99824 * 181.37742 * 7 5 4 10 10 H 1.48502 * 109.47003 * 89.99895 * 9 7 5 11 11 H 1.48497 * 109.47006 * 209.99730 * 9 7 5 12 12 H 1.48493 * 109.47215 * 329.99693 * 9 7 5 13 13 C 1.34779 * 120.00317 * 95.97289 * 4 3 2 14 14 O 1.21286 * 120.00066 * 183.63651 * 13 4 3 15 15 C 1.50698 * 119.99688 * 3.63063 * 13 4 3 16 16 H 1.09001 * 109.47311 * 46.09870 * 15 13 4 17 17 C 1.53000 * 109.47423 * 286.09209 * 15 13 4 18 18 C 1.52993 * 109.47158 * 300.00023 * 17 15 13 19 19 C 1.53003 * 109.47245 * 299.99979 * 18 17 15 20 20 C 1.53000 * 109.47025 * 59.99940 * 19 18 17 21 21 H 1.09007 * 109.47362 * 60.00130 * 20 19 18 22 22 N 1.46905 * 109.47151 * 179.97438 * 20 19 18 23 23 C 1.52993 * 109.47158 * 300.00113 * 20 19 18 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.46749 * 83.01870 * 3 2 1 26 26 H 1.09000 * 109.46855 * 203.02069 * 3 2 1 27 27 H 0.96997 * 119.99527 * 184.18295 * 8 7 5 28 28 H 1.08999 * 109.46937 * 59.99936 * 17 15 13 29 29 H 1.08997 * 109.46635 * 179.97438 * 17 15 13 30 30 H 1.09001 * 109.47094 * 179.97438 * 18 17 15 31 31 H 1.09005 * 109.47502 * 59.99768 * 18 17 15 32 32 H 1.08998 * 109.47104 * 299.99730 * 19 18 17 33 33 H 1.09000 * 109.47137 * 179.97438 * 19 18 17 34 34 H 1.00896 * 111.00093 * 300.00280 * 22 20 19 35 35 H 1.00902 * 110.99329 * 63.95873 * 22 20 19 36 36 H 1.08997 * 109.47374 * 299.99580 * 23 20 19 37 37 H 1.09001 * 109.47094 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1025 0.8308 5 6 3.2468 -0.9413 2.1877 6 1 2.4847 -0.4038 2.7324 7 6 4.3409 -1.4693 2.8621 8 7 5.2819 -2.0998 2.1957 9 14 4.4742 -1.2830 4.7160 10 1 3.8216 -2.4410 5.3781 11 1 5.9060 -1.2318 5.1067 12 1 3.8012 -0.0281 5.1371 13 6 3.4745 -2.2759 0.2613 14 8 3.8161 -3.2102 0.9550 15 6 3.4295 -2.4269 -1.2374 16 1 3.9032 -1.5631 -1.7040 17 6 1.9733 -2.5205 -1.6972 18 6 1.3086 -3.7329 -1.0424 19 6 2.0546 -5.0053 -1.4493 20 6 3.5109 -4.9117 -0.9895 21 1 3.5434 -4.8024 0.0946 22 7 4.2271 -6.1336 -1.3796 23 6 4.1756 -3.6992 -1.6443 24 1 -1.0499 -0.0001 0.0003 25 1 3.0094 -0.1241 -1.0201 26 1 3.0089 0.9467 0.4019 27 1 6.0144 -2.5208 2.6722 28 1 1.4418 -1.6141 -1.4073 29 1 1.9409 -2.6292 -2.7813 30 1 0.2710 -3.7993 -1.3696 31 1 1.3410 -3.6238 0.0417 32 1 2.0222 -5.1145 -2.5333 33 1 1.5814 -5.8690 -0.9824 34 1 3.8068 -6.9489 -0.9593 35 1 4.2669 -6.2242 -2.3838 36 1 4.1432 -3.8085 -2.7283 37 1 5.2132 -3.6328 -1.3171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300839223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:24 Heat of formation + Delta-G solvation = 36.637352 kcal Electronic energy + Delta-G solvation = -19653.437443 eV Core-core repulsion = 16818.890238 eV Total energy + Delta-G solvation = -2834.547205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.55149 -36.83489 -34.57446 -33.16139 -32.27386 -31.18826 -30.17623 -27.39921 -26.36735 -24.69754 -22.34737 -21.34430 -20.14210 -18.63894 -17.82608 -16.22561 -15.72957 -15.21708 -15.09975 -14.65558 -14.13580 -13.83451 -13.61805 -13.26462 -12.79840 -12.69085 -12.32255 -11.96891 -11.54146 -11.51111 -11.19939 -11.10320 -10.88356 -10.52822 -10.43068 -10.26398 -10.08639 -10.04524 -9.80087 -9.59481 -9.36368 -8.81956 -8.14218 -7.68446 -7.00417 -5.84520 -3.82923 3.29101 3.34942 3.38617 3.41087 3.42483 4.34897 4.47493 4.96697 5.00974 5.07119 5.32099 5.37714 5.40404 5.58737 5.74116 5.81724 5.95576 6.01012 6.04801 6.10483 6.13057 6.25144 6.34818 6.43494 6.49358 6.50811 6.62487 6.74862 6.79348 6.98439 7.27714 7.67027 7.70590 7.94221 8.16579 8.32521 9.14592 9.26094 9.74824 10.47227 11.07682 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.010344 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.155003 B = 2706.345189 C = 3697.483958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.163 4.163 3 C 0.202 3.798 4 N -0.458 5.458 5 C -0.335 4.335 6 H 0.076 0.924 7 C 0.047 3.953 8 N -0.810 5.810 9 Si 0.912 3.088 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.474 3.526 14 O -0.489 6.489 15 C -0.106 4.106 16 H 0.072 0.928 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.145 4.145 20 C 0.068 3.932 21 H 0.135 0.865 22 N -0.843 5.843 23 C -0.078 4.078 24 H 0.208 0.792 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.332 0.668 35 H 0.323 0.677 36 H 0.043 0.957 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -0.475 -8.629 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.165 4.165 3 C 0.077 3.923 4 N -0.181 5.181 5 C -0.463 4.463 6 H 0.094 0.906 7 C -0.163 4.163 8 N -0.446 5.446 9 Si 0.740 3.260 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.262 3.738 14 O -0.364 6.364 15 C -0.129 4.129 16 H 0.091 0.909 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.184 4.184 20 C -0.042 4.042 21 H 0.152 0.848 22 N -0.369 5.369 23 C -0.116 4.116 24 H 0.225 0.775 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.062 0.938 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.710 -0.726 -7.865 9.196 hybrid contribution -1.142 -0.122 0.307 1.189 sum -5.853 -0.848 -7.558 9.597 Atomic orbital electron populations 1.24676 0.95710 1.02512 1.02906 1.24233 0.95452 0.98476 0.98332 1.18612 0.82928 0.94135 0.96590 1.43295 1.60465 1.08252 1.06076 1.19050 1.05500 1.40156 0.81565 0.90601 1.25254 0.94879 0.97269 0.98929 1.70078 1.09900 1.29302 1.35295 0.86186 0.77122 0.78312 0.84423 1.20792 1.21248 1.19968 1.19608 0.83326 0.83257 0.87630 1.90359 1.45742 1.37070 1.63188 1.21292 0.96023 0.98439 0.97125 0.90946 1.21642 0.95266 0.99247 0.99021 1.21385 0.97503 0.94228 1.01871 1.22357 0.98836 0.97749 0.99505 1.22214 0.88324 0.88517 1.05186 0.84750 1.59008 1.59554 1.05069 1.13260 1.21148 1.00152 0.92949 0.97394 0.77509 0.89909 0.89413 0.92946 0.90822 0.92756 0.93200 0.91043 0.93529 0.93173 0.85607 0.86597 0.93815 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.90 19.05 29.55 0.56 -3.33 16 2 C -0.16 -3.01 11.20 -37.12 -0.42 -3.43 16 3 C 0.20 3.94 5.41 -6.83 -0.04 3.91 16 4 N -0.46 -11.24 2.55 -117.93 -0.30 -11.54 16 5 C -0.34 -9.14 9.31 -14.93 -0.14 -9.28 16 6 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 7 C 0.05 1.30 4.92 -17.47 -0.09 1.22 16 8 N -0.81 -23.80 10.21 55.50 0.57 -23.23 16 9 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 C 0.47 11.60 4.77 -10.99 -0.05 11.55 16 14 O -0.49 -13.73 10.08 5.55 0.06 -13.68 16 15 C -0.11 -2.07 2.17 -91.77 -0.20 -2.27 16 16 H 0.07 1.32 6.79 -51.93 -0.35 0.97 16 17 C -0.11 -1.93 5.22 -26.73 -0.14 -2.07 16 18 C -0.11 -1.93 5.70 -26.73 -0.15 -2.08 16 19 C -0.14 -2.34 5.49 -26.73 -0.15 -2.49 16 20 C 0.07 1.26 2.96 -67.71 -0.20 1.06 16 21 H 0.14 3.16 5.06 -51.92 -0.26 2.90 16 22 N -0.84 -13.66 9.25 -4.66 -0.04 -13.70 16 23 C -0.08 -1.47 4.75 -26.73 -0.13 -1.60 16 24 H 0.21 2.55 7.80 -54.10 -0.42 2.13 16 25 H 0.08 1.42 5.61 -51.93 -0.29 1.13 16 26 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.07 1.26 4.19 -51.93 -0.22 1.04 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.49 7.19 -51.93 -0.37 1.11 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.33 4.83 9.04 -39.29 -0.36 4.48 16 35 H 0.32 4.49 8.98 -39.29 -0.35 4.13 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 291.68 15.07 4.40 4.40 Total: -1.00 -31.41 291.68 -6.61 -38.02 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.13 Total: 11.81 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.13 Total: -8.82 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.22 Total: -48.48 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.06 Total: -13.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.41 -6.61 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300839223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.660 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds