Wall clock time and date at job start Mon Mar 30 2020 04:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46970 * 323.02106 * 3 2 1 5 5 C 1.37104 * 120.00026 * 275.96783 * 4 3 2 6 6 H 1.08002 * 119.99758 * 40.04222 * 5 4 3 7 7 C 1.38948 * 119.99994 * 220.04834 * 5 4 3 8 8 N 1.31414 * 120.00282 * 1.37327 * 7 5 4 9 9 Si 1.86806 * 119.99824 * 181.37742 * 7 5 4 10 10 H 1.48502 * 109.47003 * 89.99895 * 9 7 5 11 11 H 1.48497 * 109.47006 * 209.99730 * 9 7 5 12 12 H 1.48493 * 109.47215 * 329.99693 * 9 7 5 13 13 C 1.34779 * 120.00317 * 95.97289 * 4 3 2 14 14 O 1.21286 * 120.00066 * 183.63651 * 13 4 3 15 15 C 1.50698 * 119.99688 * 3.63063 * 13 4 3 16 16 H 1.09001 * 109.47311 * 46.09870 * 15 13 4 17 17 C 1.53000 * 109.47423 * 286.09209 * 15 13 4 18 18 C 1.52993 * 109.47158 * 300.00023 * 17 15 13 19 19 C 1.53003 * 109.47245 * 299.99979 * 18 17 15 20 20 C 1.53000 * 109.47025 * 59.99940 * 19 18 17 21 21 H 1.09007 * 109.47362 * 60.00130 * 20 19 18 22 22 N 1.46905 * 109.47151 * 179.97438 * 20 19 18 23 23 C 1.52993 * 109.47158 * 300.00113 * 20 19 18 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.46749 * 83.01870 * 3 2 1 26 26 H 1.09000 * 109.46855 * 203.02069 * 3 2 1 27 27 H 0.96997 * 119.99527 * 184.18295 * 8 7 5 28 28 H 1.08999 * 109.46937 * 59.99936 * 17 15 13 29 29 H 1.08997 * 109.46635 * 179.97438 * 17 15 13 30 30 H 1.09001 * 109.47094 * 179.97438 * 18 17 15 31 31 H 1.09005 * 109.47502 * 59.99768 * 18 17 15 32 32 H 1.08998 * 109.47104 * 299.99730 * 19 18 17 33 33 H 1.09000 * 109.47137 * 179.97438 * 19 18 17 34 34 H 1.00896 * 111.00093 * 300.00280 * 22 20 19 35 35 H 1.00902 * 110.99329 * 63.95873 * 22 20 19 36 36 H 1.08997 * 109.47374 * 299.99580 * 23 20 19 37 37 H 1.09001 * 109.47094 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1025 0.8308 5 6 3.2468 -0.9413 2.1877 6 1 2.4847 -0.4038 2.7324 7 6 4.3409 -1.4693 2.8621 8 7 5.2819 -2.0998 2.1957 9 14 4.4742 -1.2830 4.7160 10 1 3.8216 -2.4410 5.3781 11 1 5.9060 -1.2318 5.1067 12 1 3.8012 -0.0281 5.1371 13 6 3.4745 -2.2759 0.2613 14 8 3.8161 -3.2102 0.9550 15 6 3.4295 -2.4269 -1.2374 16 1 3.9032 -1.5631 -1.7040 17 6 1.9733 -2.5205 -1.6972 18 6 1.3086 -3.7329 -1.0424 19 6 2.0546 -5.0053 -1.4493 20 6 3.5109 -4.9117 -0.9895 21 1 3.5434 -4.8024 0.0946 22 7 4.2271 -6.1336 -1.3796 23 6 4.1756 -3.6992 -1.6443 24 1 -1.0499 -0.0001 0.0003 25 1 3.0094 -0.1241 -1.0201 26 1 3.0089 0.9467 0.4019 27 1 6.0144 -2.5208 2.6722 28 1 1.4418 -1.6141 -1.4073 29 1 1.9409 -2.6292 -2.7813 30 1 0.2710 -3.7993 -1.3696 31 1 1.3410 -3.6238 0.0417 32 1 2.0222 -5.1145 -2.5333 33 1 1.5814 -5.8690 -0.9824 34 1 3.8068 -6.9489 -0.9593 35 1 4.2669 -6.2242 -2.3838 36 1 4.1432 -3.8085 -2.7283 37 1 5.2132 -3.6328 -1.3171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300839223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:23 Heat of formation + Delta-G solvation = 14.937766 kcal Electronic energy + Delta-G solvation = -19654.378408 eV Core-core repulsion = 16818.890238 eV Total energy + Delta-G solvation = -2835.488170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18677 -38.44894 -36.32260 -34.76006 -33.90513 -32.88599 -31.68819 -28.80849 -28.05141 -26.52516 -23.97358 -22.76698 -21.70865 -20.32039 -19.34635 -17.93564 -17.41016 -16.88871 -16.55853 -16.34022 -15.82161 -15.51406 -15.07364 -14.77026 -14.30547 -14.19737 -13.88757 -13.53505 -13.17069 -13.09252 -12.95565 -12.84835 -12.60459 -12.42918 -12.08335 -11.82358 -11.61743 -11.48067 -11.29717 -11.06347 -10.85484 -10.72328 -9.63304 -9.39787 -8.95212 -7.92536 -5.94880 1.40292 1.43278 1.51473 1.91846 2.03540 2.41420 2.72376 3.26396 3.37052 3.64897 3.76166 3.93095 3.95148 4.22746 4.30995 4.38895 4.49277 4.57025 4.63319 4.70408 4.77949 4.81265 4.87608 5.03773 5.05062 5.19268 5.25734 5.37017 5.38287 5.48591 5.53323 5.78638 6.24595 6.40661 6.77911 6.83021 7.11675 7.32343 7.81352 8.60153 8.97382 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.010344 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.155003 B = 2706.345189 C = 3697.483958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.213 4.213 3 C 0.203 3.797 4 N -0.477 5.477 5 C -0.347 4.347 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.845 5.845 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.466 3.534 14 O -0.535 6.535 15 C -0.101 4.101 16 H 0.085 0.915 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.135 4.135 20 C 0.072 3.928 21 H 0.081 0.919 22 N -0.850 5.850 23 C -0.074 4.074 24 H 0.247 0.753 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.251 0.749 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.341 0.659 35 H 0.341 0.659 36 H 0.081 0.919 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -0.173 -10.673 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.215 4.215 3 C 0.080 3.920 4 N -0.200 5.200 5 C -0.475 4.475 6 H 0.090 0.910 7 C -0.210 4.210 8 N -0.482 5.482 9 Si 0.798 3.202 10 H -0.217 1.217 11 H -0.210 1.210 12 H -0.182 1.182 13 C 0.255 3.745 14 O -0.412 6.412 15 C -0.124 4.124 16 H 0.103 0.897 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.174 4.174 20 C -0.039 4.039 21 H 0.099 0.901 22 N -0.379 5.379 23 C -0.112 4.112 24 H 0.263 0.737 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.731 -0.389 -9.929 12.001 hybrid contribution -0.623 -0.218 0.910 1.124 sum -7.354 -0.608 -9.019 11.653 Atomic orbital electron populations 1.25562 0.96496 0.99738 1.00242 1.24086 0.95622 1.00974 1.00790 1.18631 0.84176 0.92395 0.96819 1.43559 1.60793 1.09817 1.05801 1.19255 1.05123 1.39606 0.83558 0.91011 1.26049 0.94763 0.97153 1.03079 1.70246 1.10516 1.30980 1.36448 0.85257 0.77050 0.78398 0.79518 1.21666 1.21018 1.18151 1.20515 0.81662 0.82541 0.89825 1.90368 1.47207 1.38611 1.64972 1.21283 0.98494 0.99272 0.93316 0.89682 1.21633 0.92752 0.99018 1.01015 1.21360 0.99398 0.95098 0.98963 1.22247 0.96469 0.97400 1.01288 1.21846 0.90530 0.89433 1.02106 0.90117 1.58856 1.59644 1.04644 1.14725 1.21107 0.97801 0.92891 0.99407 0.73666 0.87741 0.89521 0.93929 0.90893 0.89008 0.90496 0.95768 0.90353 0.92673 0.84599 0.84608 0.90063 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.95 19.05 74.32 1.42 -4.53 16 2 C -0.21 -7.53 11.20 31.13 0.35 -7.18 16 3 C 0.20 7.88 5.41 84.58 0.46 8.34 16 4 N -0.48 -23.94 2.55 -645.41 -1.65 -25.59 16 5 C -0.35 -19.51 9.31 84.04 0.78 -18.73 16 6 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 7 C 0.00 -0.25 4.92 84.93 0.42 0.16 16 8 N -0.85 -52.06 10.21 21.66 0.22 -51.84 16 9 Si 0.97 46.16 29.56 68.60 2.03 48.19 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 13 C 0.47 23.41 4.77 87.66 0.42 23.83 16 14 O -0.53 -31.63 10.08 -3.05 -0.03 -31.66 16 15 C -0.10 -3.85 2.17 -11.54 -0.03 -3.88 16 16 H 0.09 2.98 6.79 -2.39 -0.02 2.96 16 17 C -0.11 -3.29 5.22 30.59 0.16 -3.13 16 18 C -0.11 -3.57 5.70 30.59 0.17 -3.40 16 19 C -0.13 -4.02 5.49 30.60 0.17 -3.85 16 20 C 0.07 2.65 2.96 44.91 0.13 2.78 16 21 H 0.08 3.99 5.06 -2.38 -0.01 3.98 16 22 N -0.85 -26.74 9.25 -168.67 -1.56 -28.30 16 23 C -0.07 -2.72 4.75 30.59 0.15 -2.58 16 24 H 0.25 4.88 7.80 -4.42 -0.03 4.84 16 25 H 0.10 3.47 5.61 -2.38 -0.01 3.46 16 26 H 0.09 3.28 8.09 -2.39 -0.02 3.26 16 27 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.07 2.29 4.19 -2.39 -0.01 2.28 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.02 1.00 7.19 -2.38 -0.02 0.98 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.34 9.64 9.04 -89.70 -0.81 8.83 16 35 H 0.34 8.63 8.98 -89.69 -0.81 7.82 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.72 291.68 3.08 -69.65 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.53 Total: 31.70 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.60 Total: -12.16 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -2.99 Total: -105.72 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.03 Total: -31.66 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.72 3.08 -69.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300839223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.583 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds